Wall clock time and date at job start Tue Mar 31 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47186 * 2 1 4 4 C 1.52996 * 109.47098 * 239.99561 * 2 1 3 5 5 C 1.50701 * 109.46838 * 65.00237 * 4 2 1 6 6 H 1.07996 * 120.00481 * 0.02562 * 5 4 2 7 7 C 1.37888 * 119.99808 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99648 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47314 * 90.00254 * 9 7 5 11 11 H 1.48502 * 109.47027 * 210.00153 * 9 7 5 12 12 H 1.48497 * 109.47214 * 330.00182 * 9 7 5 13 13 C 1.53007 * 109.46719 * 120.00058 * 2 1 3 14 14 N 1.46900 * 109.46859 * 294.99779 * 13 2 1 15 15 C 1.46902 * 110.99594 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46919 * 174.70590 * 15 14 13 17 17 N 1.46894 * 115.55257 * 274.55593 * 16 15 14 18 18 C 1.47017 * 111.00047 * 58.27211 * 17 16 15 19 19 C 1.53095 * 109.25807 * 177.60621 * 18 17 16 20 20 O 1.43014 * 109.26046 * 56.85259 * 19 18 17 21 21 C 1.43025 * 113.73582 * 301.33341 * 20 19 18 22 22 C 1.47010 * 111.00100 * 294.63977 * 17 16 15 23 23 C 1.52999 * 117.49558 * 128.88398 * 16 15 14 24 24 C 1.52999 * 117.49683 * 60.22939 * 16 15 14 25 25 H 1.09000 * 109.46853 * 300.00600 * 1 2 3 26 26 H 1.09006 * 109.46846 * 59.99634 * 1 2 3 27 27 H 1.08991 * 109.47551 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47640 * 185.00335 * 4 2 1 29 29 H 1.09005 * 109.47451 * 305.00531 * 4 2 1 30 30 H 0.96996 * 119.99906 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46756 * 175.00034 * 13 2 1 32 32 H 1.08996 * 109.47349 * 55.00129 * 13 2 1 33 33 H 1.00894 * 111.00374 * 56.05017 * 14 13 2 34 34 H 1.09000 * 109.47447 * 294.70564 * 15 14 13 35 35 H 1.08996 * 109.47296 * 54.70815 * 15 14 13 36 36 H 1.09000 * 109.50928 * 297.54381 * 18 17 16 37 37 H 1.09002 * 109.50100 * 57.67701 * 18 17 16 38 38 H 1.09002 * 109.50951 * 296.91927 * 19 18 17 39 39 H 1.08998 * 109.54415 * 176.80709 * 19 18 17 40 40 H 1.09000 * 109.50251 * 298.72933 * 21 20 19 41 41 H 1.08996 * 109.54137 * 178.62782 * 21 20 19 42 42 H 1.08996 * 109.50740 * 302.32517 * 22 17 16 43 43 H 1.08999 * 109.50755 * 62.41179 * 22 17 16 44 44 H 1.09003 * 117.50077 * 0.02562 * 23 16 15 45 45 H 1.08999 * 117.49975 * 145.02407 * 23 16 15 46 46 H 1.09001 * 117.49772 * 214.97703 * 24 16 15 47 47 H 1.09006 * 117.50150 * 359.97069 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4019 -3.7283 8 7 2.6764 -1.5189 -3.8510 9 14 1.4997 0.5632 -5.2495 10 1 2.5653 1.5427 -5.5817 11 1 1.3130 -0.3705 -6.3891 12 1 0.2285 1.2846 -4.9873 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1256 -0.6266 3.6672 16 6 1.8189 0.2556 4.8791 17 7 2.8219 1.2848 5.1837 18 6 3.0142 2.1880 4.0397 19 6 4.0203 3.2774 4.4200 20 8 5.2433 2.6650 4.8379 21 6 5.0928 1.7792 5.9506 22 6 4.0975 0.6747 5.5858 23 6 1.0911 -0.3925 6.0585 24 6 0.3524 0.5955 5.1524 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2056 29 1 1.6053 -1.7199 -1.2951 30 1 2.9243 -1.8415 -4.7316 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7198 1.2952 33 1 0.6528 0.1793 2.4753 34 1 1.6203 -1.5859 3.7789 35 1 3.2013 -0.7883 3.5985 36 1 3.3945 1.6222 3.1892 37 1 2.0621 2.6481 3.7753 38 1 3.6164 3.8772 5.2357 39 1 4.2094 3.9163 3.5574 40 1 4.7201 2.3354 6.8107 41 1 6.0571 1.3340 6.1953 42 1 3.9363 0.0301 6.4499 43 1 4.4947 0.0840 4.7603 44 1 0.8311 -1.4475 5.9713 45 1 1.3561 -0.0550 7.0605 46 1 0.1318 1.5827 5.5586 47 1 -0.3939 0.1911 4.4686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602635683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:15 Heat of formation + Delta-G solvation = -26.694617 kcal Electronic energy + Delta-G solvation = -23144.693036 eV Core-core repulsion = 19941.701355 eV Total energy + Delta-G solvation = -3202.991681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04183 -38.07275 -36.44947 -33.87899 -33.48673 -31.76408 -31.20583 -27.48435 -26.83923 -26.23846 -24.52691 -24.02515 -22.44441 -21.93082 -21.03865 -19.44000 -18.81116 -17.06289 -16.33944 -16.15889 -15.67022 -15.20986 -15.03970 -14.92494 -14.73914 -14.65427 -14.15517 -13.76064 -13.39347 -13.03520 -12.50495 -12.45956 -12.31893 -11.99711 -11.77217 -11.61456 -11.55426 -11.39420 -11.34242 -10.90343 -10.76046 -10.71130 -10.53788 -10.34093 -10.24857 -9.97361 -9.74025 -9.71514 -9.17182 -8.98733 -8.55692 -8.33083 -8.05101 -5.97802 -3.99043 3.33154 3.39406 3.42349 3.52643 3.54019 3.82109 4.34183 4.48740 4.69768 4.77077 4.88231 4.94013 4.96819 5.07927 5.18073 5.30453 5.34065 5.38068 5.46408 5.50805 5.53920 5.54682 5.65604 5.73537 5.76795 5.79063 5.84335 5.97915 6.02702 6.03341 6.19965 6.23089 6.43885 6.53362 6.85407 6.91720 6.97821 7.07019 7.09006 7.15649 7.32256 7.61322 7.69356 7.84943 8.02206 8.45910 9.07275 9.64421 11.13767 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.003526 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.290093 B = 7939.657203 C = 8601.105332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.683 5.683 15 C 0.069 3.931 16 C 0.040 3.960 17 N -0.498 5.498 18 C 0.027 3.973 19 C 0.062 3.938 20 O -0.386 6.386 21 C 0.066 3.934 22 C 0.017 3.983 23 C -0.162 4.162 24 C -0.152 4.152 25 H 0.031 0.969 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.338 0.662 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 4.267 22.100 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.062 4.062 16 C -0.051 4.051 17 N -0.222 5.222 18 C -0.101 4.101 19 C -0.015 4.015 20 O -0.305 6.305 21 C -0.011 4.011 22 C -0.111 4.111 23 C -0.200 4.200 24 C -0.190 4.190 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.157 0.843 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.154 4.899 22.232 22.766 hybrid contribution -0.796 -0.958 -1.447 1.909 sum -0.950 3.941 20.785 21.177 Atomic orbital electron populations 1.21733 0.96692 1.00366 1.00245 1.21203 0.94817 1.00029 0.94065 0.91676 1.19105 0.96093 0.95342 0.90400 1.21231 1.34680 1.08236 0.90974 0.92571 1.25022 0.95329 0.95071 0.99109 1.69964 1.39086 1.21229 1.23392 0.86627 0.78933 0.79818 0.82830 1.20694 1.21326 1.19908 1.22140 1.00198 0.94448 0.89618 1.60587 1.19662 1.50262 1.01029 1.21858 1.00841 0.94181 0.89335 1.21534 0.91955 0.96110 0.95500 1.62224 1.07326 1.16682 1.35988 1.22697 1.00218 0.94624 0.92569 1.22757 0.84415 0.94534 0.99825 1.87996 1.31388 1.61183 1.49916 1.22616 0.98885 0.90581 0.89057 1.22731 0.90226 0.97178 1.00947 1.23109 1.03280 0.98169 0.95465 1.22952 0.93210 1.00561 1.02299 0.95030 0.91843 0.94104 0.96736 0.96823 0.93096 0.91702 0.95955 0.84250 0.94998 0.90945 0.91417 0.89593 0.92945 0.88428 0.92671 0.88753 0.90075 0.93620 0.88867 0.88356 0.88242 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.77 37.16 0.33 -2.12 16 2 C -0.08 -1.66 2.55 -90.62 -0.23 -1.89 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.11 5.14 -3.82 -0.02 1.09 16 14 N -0.68 -9.63 5.18 -113.77 -0.59 -10.22 16 15 C 0.07 0.86 5.01 -3.82 -0.02 0.84 16 16 C 0.04 0.43 1.24 -131.60 -0.16 0.26 16 17 N -0.50 -5.53 4.80 -218.67 -1.05 -6.58 16 18 C 0.03 0.32 4.97 -3.71 -0.02 0.30 16 19 C 0.06 0.69 7.01 37.21 0.26 0.95 16 20 O -0.39 -4.88 10.83 -35.23 -0.38 -5.26 16 21 C 0.07 0.65 7.01 37.21 0.26 0.91 16 22 C 0.02 0.18 5.46 -3.72 -0.02 0.16 16 23 C -0.16 -1.46 10.10 -26.70 -0.27 -1.73 16 24 C -0.15 -1.47 9.76 -26.70 -0.26 -1.73 16 25 H 0.03 0.48 6.68 -51.93 -0.35 0.14 16 26 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.34 4.57 6.21 -39.29 -0.24 4.33 16 34 H 0.03 0.39 7.90 -51.93 -0.41 -0.02 16 35 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 36 H 0.07 0.99 6.87 -51.93 -0.36 0.63 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.54 6.70 -51.93 -0.35 0.19 16 44 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.09 0.87 7.73 -51.93 -0.40 0.47 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -29.89 363.22 -10.14 -40.04 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.65 Total: 1.70 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.66 Total: -15.54 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.90 Total: -43.16 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.38 Total: -5.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.89 -10.14 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.344 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds