Wall clock time and date at job start Tue Mar 31 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46629 * 2 1 4 4 C 1.53000 * 109.47078 * 120.00050 * 2 1 3 5 5 C 1.50702 * 109.47231 * 295.00029 * 4 2 1 6 6 H 1.08002 * 119.99672 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00287 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99496 * 359.72776 * 7 5 4 9 9 Si 1.86799 * 119.99965 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46978 * 269.72554 * 9 7 5 11 11 H 1.48495 * 109.47179 * 29.72748 * 9 7 5 12 12 H 1.48504 * 109.46633 * 149.72832 * 9 7 5 13 13 C 1.52998 * 109.47068 * 240.00026 * 2 1 3 14 14 N 1.46897 * 109.47236 * 64.99936 * 13 2 1 15 15 C 1.46893 * 111.00156 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47472 * 174.95806 * 15 14 13 17 17 N 1.46896 * 115.55335 * 273.25033 * 16 15 14 18 18 C 1.47014 * 111.00067 * 58.32670 * 17 16 15 19 19 C 1.53101 * 109.25912 * 177.61182 * 18 17 16 20 20 O 1.43012 * 109.25802 * 56.84750 * 19 18 17 21 21 C 1.43015 * 113.74119 * 301.33033 * 20 19 18 22 22 C 1.47016 * 110.99769 * 294.69545 * 17 16 15 23 23 C 1.53004 * 117.49785 * 127.57214 * 16 15 14 24 24 C 1.53003 * 117.49607 * 58.91333 * 16 15 14 25 25 H 1.08997 * 109.46629 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47112 * 299.99654 * 1 2 3 27 27 H 1.09000 * 109.46838 * 60.00183 * 1 2 3 28 28 H 1.08994 * 109.47092 * 175.00246 * 4 2 1 29 29 H 1.09004 * 109.47055 * 54.99440 * 4 2 1 30 30 H 0.96999 * 120.00629 * 0.27584 * 8 7 5 31 31 H 1.09001 * 109.47078 * 185.00042 * 13 2 1 32 32 H 1.09002 * 109.47429 * 304.99946 * 13 2 1 33 33 H 1.00905 * 111.00011 * 56.04220 * 14 13 2 34 34 H 1.09002 * 109.47446 * 294.96348 * 15 14 13 35 35 H 1.09009 * 109.47092 * 54.96010 * 15 14 13 36 36 H 1.09002 * 109.51056 * 297.54600 * 18 17 16 37 37 H 1.08998 * 109.50753 * 57.67628 * 18 17 16 38 38 H 1.09002 * 109.50231 * 296.91721 * 19 18 17 39 39 H 1.08997 * 109.54305 * 176.80491 * 19 18 17 40 40 H 1.09000 * 109.50538 * 298.74101 * 21 20 19 41 41 H 1.08996 * 109.54161 * 178.62883 * 21 20 19 42 42 H 1.09004 * 109.50388 * 302.32193 * 22 17 16 43 43 H 1.08995 * 109.50831 * 62.40970 * 22 17 16 44 44 H 1.08997 * 117.50140 * 0.02562 * 23 16 15 45 45 H 1.09001 * 117.49023 * 145.02603 * 23 16 15 46 46 H 1.08997 * 117.50039 * 214.98037 * 24 16 15 47 47 H 1.09005 * 117.49973 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9924 -0.4023 3.7284 8 7 2.6705 -1.5223 3.8515 9 14 1.4988 0.5629 5.2496 10 1 2.5679 1.5370 5.5863 11 1 0.2316 1.2904 4.9847 12 1 1.3045 -0.3717 6.3872 13 6 2.0401 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6265 -3.6671 16 6 1.5969 0.1216 -4.8925 17 7 0.2644 -0.2860 -5.3573 18 6 -0.7380 -0.1193 -4.2949 19 6 -2.1182 -0.4979 -4.8389 20 8 -2.0769 -1.8370 -5.3391 21 6 -1.1118 -2.0350 -6.3757 22 6 0.2785 -1.6720 -5.8473 23 6 2.6142 0.5502 -5.9519 24 6 1.9745 1.5973 -5.0366 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7994 1.2056 29 1 1.6053 -1.7198 1.2952 30 1 2.9271 -2.0233 3.0615 31 1 3.1264 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2952 33 1 1.9882 0.9874 -2.3966 34 1 3.2157 -0.6239 -3.6822 35 1 1.7647 -1.6548 -3.6854 36 1 -0.4883 -0.7663 -3.4540 37 1 -0.7493 0.9194 -3.9648 38 1 -2.3911 0.1834 -5.6448 39 1 -2.8562 -0.4304 -4.0396 40 1 -1.3555 -1.3983 -7.2263 41 1 -1.1213 -3.0792 -6.6881 42 1 1.0093 -1.7666 -6.6505 43 1 0.5453 -2.3438 -5.0315 44 1 3.6601 0.2990 -5.7762 45 1 2.2944 0.5301 -6.9938 46 1 1.2343 2.2655 -5.4767 47 1 2.5993 2.0353 -4.2582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602635687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:17 Heat of formation + Delta-G solvation = -30.951121 kcal Electronic energy + Delta-G solvation = -23230.616042 eV Core-core repulsion = 20027.439786 eV Total energy + Delta-G solvation = -3203.176256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09274 -38.11725 -36.49939 -33.98365 -33.68895 -31.79970 -31.26222 -27.39683 -26.59949 -26.22697 -24.44328 -23.92605 -22.52227 -22.03432 -21.09960 -19.65413 -19.05832 -16.96062 -16.69856 -16.20630 -15.69907 -15.32053 -15.09894 -14.96773 -14.73214 -14.39154 -14.10542 -13.70295 -13.55453 -13.29634 -12.70344 -12.51752 -12.25192 -11.87711 -11.72683 -11.65046 -11.59641 -11.41139 -11.38154 -11.01748 -10.75483 -10.68745 -10.57518 -10.29583 -10.10124 -10.00400 -9.83824 -9.76745 -9.44700 -8.64537 -8.45405 -8.29504 -8.11384 -6.32458 -4.00600 3.44511 3.48170 3.48618 3.48988 3.64096 3.76854 4.28787 4.57013 4.65226 4.71718 4.82640 4.89222 4.91729 5.02566 5.12775 5.24973 5.29081 5.41078 5.44082 5.46714 5.48928 5.49795 5.57655 5.62514 5.72455 5.75935 5.79627 5.92773 5.99353 6.02156 6.12621 6.28900 6.41333 6.56502 6.80592 6.87171 6.92048 7.01668 7.04618 7.10492 7.22208 7.40233 7.52131 7.60103 8.26797 8.50739 8.92617 9.71005 11.07972 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.003436 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.036148 B = 8145.953667 C = 8683.726308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.070 3.930 16 C 0.040 3.960 17 N -0.498 5.498 18 C 0.027 3.973 19 C 0.062 3.938 20 O -0.387 6.387 21 C 0.066 3.934 22 C 0.017 3.983 23 C -0.162 4.162 24 C -0.151 4.151 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.002 0.998 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.338 0.662 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 2.899 -22.769 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.311 5.311 15 C -0.062 4.062 16 C -0.051 4.051 17 N -0.222 5.222 18 C -0.101 4.101 19 C -0.015 4.015 20 O -0.305 6.305 21 C -0.011 4.011 22 C -0.111 4.111 23 C -0.200 4.200 24 C -0.189 4.189 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.807 2.768 -21.466 22.171 hybrid contribution 1.422 -0.177 -1.055 1.780 sum -3.385 2.590 -22.522 22.921 Atomic orbital electron populations 1.21564 0.95445 1.00488 1.00273 1.21042 0.96161 0.98746 0.93313 0.92748 1.19249 0.95053 0.95631 0.92410 1.22053 1.38612 1.10266 0.92237 0.93170 1.25829 0.94749 0.97119 1.01398 1.70748 1.36387 1.14683 1.33490 0.83532 0.75978 0.75237 0.75398 1.21572 1.21472 1.21061 1.22159 0.97001 0.97670 0.89685 1.60538 1.63807 1.05704 1.01010 1.21857 0.96770 0.98259 0.89287 1.21527 0.90110 0.97820 0.95681 1.62222 1.03606 1.21343 1.35010 1.22692 0.90767 1.03279 0.93326 1.22756 0.96858 0.83329 0.98593 1.87991 1.58507 1.29442 1.54564 1.22620 0.87023 1.01386 0.90114 1.22736 0.98461 0.89638 1.00240 1.23118 0.97012 1.03383 0.96489 1.22954 1.02751 0.91251 1.01966 0.94342 0.92654 0.93824 0.97976 0.97539 0.92188 0.96000 0.91821 0.84430 0.94969 0.90996 0.91586 0.89569 0.92884 0.88453 0.92617 0.88734 0.90035 0.93700 0.88864 0.88334 0.88223 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.07 -1.50 2.48 -90.62 -0.22 -1.73 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.89 8.41 -34.44 -0.29 -17.18 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.45 13.65 55.43 0.76 -27.70 16 9 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 C 0.06 1.08 5.07 -3.83 -0.02 1.06 16 14 N -0.68 -9.39 4.75 -113.78 -0.54 -9.93 16 15 C 0.07 0.84 4.99 -3.83 -0.02 0.82 16 16 C 0.04 0.41 1.24 -131.60 -0.16 0.25 16 17 N -0.50 -5.39 4.80 -218.65 -1.05 -6.44 16 18 C 0.03 0.32 5.00 -3.71 -0.02 0.30 16 19 C 0.06 0.67 7.01 37.21 0.26 0.93 16 20 O -0.39 -4.74 10.83 -35.23 -0.38 -5.13 16 21 C 0.07 0.63 7.01 37.21 0.26 0.89 16 22 C 0.02 0.17 5.46 -3.71 -0.02 0.15 16 23 C -0.16 -1.44 10.10 -26.69 -0.27 -1.71 16 24 C -0.15 -1.44 9.74 -26.69 -0.26 -1.70 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 27 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 28 H 0.00 0.05 8.01 -51.93 -0.42 -0.36 16 29 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 30 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.34 4.51 7.86 -39.29 -0.31 4.20 16 34 H 0.03 0.39 7.89 -51.93 -0.41 -0.02 16 35 H 0.07 0.95 6.51 -51.92 -0.34 0.61 16 36 H 0.07 0.94 6.93 -51.93 -0.36 0.58 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.52 6.69 -51.93 -0.35 0.17 16 44 H 0.09 0.77 8.04 -51.93 -0.42 0.36 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.87 7.65 -51.93 -0.40 0.48 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -30.68 364.14 -10.15 -40.83 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.71 Total: 1.70 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.63 Total: -19.41 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.83 Total: -44.06 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.38 Total: -5.13 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.68 -10.15 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.879 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds