Wall clock time and date at job start Tue Mar 31 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99532 * 2 1 4 4 N 1.34773 * 119.99640 * 179.97438 * 2 1 3 5 5 C 1.46919 * 120.63573 * 355.02239 * 4 2 1 6 6 C 1.53199 * 108.76614 * 126.39978 * 5 4 2 7 7 C 1.53043 * 109.31011 * 54.66040 * 6 5 4 8 8 C 1.53039 * 109.52414 * 298.61176 * 7 6 5 9 9 H 1.08998 * 109.50125 * 301.42126 * 8 7 6 10 10 C 1.52999 * 109.49633 * 181.32459 * 8 7 6 11 11 N 1.46898 * 109.47070 * 175.00248 * 10 8 7 12 12 C 1.46904 * 111.00112 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47181 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47236 * 304.99861 * 13 12 11 15 15 C 1.52997 * 109.47288 * 64.99811 * 13 12 11 16 16 C 1.53006 * 109.46908 * 184.99768 * 13 12 11 17 17 C 1.50707 * 109.46951 * 175.00193 * 16 13 12 18 18 H 1.07996 * 119.99931 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99865 * 180.02562 * 17 16 13 20 20 N 1.31509 * 119.99841 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99778 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47344 * 60.00011 * 21 19 17 23 23 H 1.48502 * 109.46887 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47462 * 299.99855 * 21 19 17 25 25 C 1.46929 * 120.62605 * 175.03869 * 4 2 1 26 26 H 1.08997 * 109.47510 * 185.38844 * 1 2 3 27 27 H 1.08996 * 109.46966 * 305.38533 * 1 2 3 28 28 H 1.09001 * 109.47032 * 65.38854 * 1 2 3 29 29 H 1.08992 * 109.58976 * 246.19930 * 5 4 2 30 30 H 1.09009 * 109.58459 * 6.62551 * 5 4 2 31 31 H 1.08992 * 109.51144 * 294.69795 * 6 5 4 32 32 H 1.09004 * 109.48488 * 174.60023 * 6 5 4 33 33 H 1.08998 * 109.46126 * 178.59748 * 7 6 5 34 34 H 1.09002 * 109.46007 * 58.62419 * 7 6 5 35 35 H 1.09008 * 109.46799 * 294.99825 * 10 8 7 36 36 H 1.08998 * 109.47259 * 54.99571 * 10 8 7 37 37 H 1.00901 * 111.00603 * 56.04279 * 11 10 8 38 38 H 1.09006 * 109.47060 * 299.99825 * 12 11 10 39 39 H 1.08995 * 109.47255 * 59.99766 * 12 11 10 40 40 H 1.08996 * 109.47416 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47091 * 299.99975 * 15 13 12 42 42 H 1.09003 * 109.47439 * 59.99829 * 15 13 12 43 43 H 1.08999 * 109.47177 * 294.99554 * 16 13 12 44 44 H 1.08998 * 109.47104 * 55.00547 * 16 13 12 45 45 H 0.97000 * 119.99955 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.58174 * 113.80297 * 25 4 2 47 47 H 1.08996 * 109.59146 * 353.37918 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4645 -2.4452 0.1108 6 6 1.8851 -3.3480 -1.0532 7 6 3.4097 -3.4814 -1.0648 8 6 4.0422 -2.1030 -1.2700 9 1 3.6877 -1.6760 -2.2082 10 6 5.5652 -2.2416 -1.3146 11 7 6.1664 -0.9390 -1.6304 12 6 7.6314 -1.0340 -1.6823 13 6 8.2201 0.3388 -2.0136 14 1 7.7758 0.7116 -2.9365 15 6 7.9177 1.3122 -0.8726 16 6 9.7348 0.2150 -2.1904 17 6 10.2984 1.5396 -2.6364 18 1 9.6419 2.3850 -2.7798 19 6 11.6521 1.6718 -2.8624 20 7 12.4515 0.6422 -2.6882 21 14 12.3506 3.3135 -3.4159 22 1 12.0551 4.3478 -2.3921 23 1 13.8208 3.1934 -3.5874 24 1 11.7314 3.7047 -4.7077 25 6 3.6460 -1.1858 -0.1088 26 1 -0.3634 -1.0231 0.0965 27 1 -0.3633 0.5951 0.8378 28 1 -0.3633 0.4280 -0.9343 29 1 1.7173 -2.9255 1.0559 30 1 0.3900 -2.2669 0.0650 31 1 1.5511 -2.9093 -1.9934 32 1 1.4347 -4.3330 -0.9305 33 1 3.7101 -4.1434 -1.8770 34 1 3.7451 -3.8971 -0.1146 35 1 5.9275 -2.5834 -0.3449 36 1 5.8420 -2.9651 -2.0814 37 1 5.8725 -0.2353 -0.9697 38 1 8.0084 -1.3676 -0.7154 39 1 7.9222 -1.7489 -2.4520 40 1 8.3375 2.2901 -1.1084 41 1 6.8386 1.4004 -0.7466 42 1 8.3620 0.9395 0.0504 43 1 10.1891 -0.0723 -1.2421 44 1 9.9520 -0.5439 -2.9421 45 1 13.4039 0.7353 -2.8468 46 1 4.0768 -1.5634 0.8186 47 1 4.0110 -0.1766 -0.2994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602638673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:54 Heat of formation + Delta-G solvation = -59.452744 kcal Electronic energy + Delta-G solvation = -22542.608500 eV Core-core repulsion = 19338.196321 eV Total energy + Delta-G solvation = -3204.412180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45623 -38.10606 -36.72660 -34.59869 -33.01985 -32.12717 -31.16794 -29.76732 -26.94619 -26.09252 -25.42651 -24.50114 -22.56871 -21.64211 -20.65862 -19.27991 -18.85877 -17.46562 -16.51039 -16.23627 -15.68992 -15.44897 -14.91822 -14.75816 -14.52695 -14.14600 -13.80570 -13.60049 -13.52445 -13.29850 -13.07742 -12.87204 -12.37542 -12.27197 -12.17634 -11.81226 -11.53089 -11.46210 -11.30918 -11.07959 -10.91556 -10.83222 -10.74458 -10.67059 -10.28675 -10.12788 -9.94651 -9.66026 -9.09279 -8.92506 -8.88686 -8.28431 -8.10395 -5.93415 -3.94266 2.41595 2.74074 3.38322 3.42022 3.45311 4.18694 4.30478 4.38103 4.51438 4.52735 4.69258 4.74475 4.82216 4.98188 5.06472 5.09271 5.23089 5.36899 5.40796 5.42331 5.43494 5.51773 5.56072 5.68432 5.75297 5.77385 5.83799 5.87377 5.99235 6.13230 6.15954 6.27456 6.32056 6.53471 6.62753 7.00144 7.15444 7.17631 7.22914 7.41723 7.68070 7.74582 7.91036 7.96074 8.07165 8.51450 9.11949 9.68897 11.18174 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.002899 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.998127 B = 9657.312639 C =10458.335436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.510 3.490 3 O -0.542 6.542 4 N -0.613 5.613 5 C 0.100 3.900 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.100 4.100 9 H 0.084 0.916 10 C 0.065 3.935 11 N -0.692 5.692 12 C 0.065 3.935 13 C -0.085 4.085 14 H 0.065 0.935 15 C -0.134 4.134 16 C 0.029 3.971 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.112 3.888 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.338 0.662 38 H 0.023 0.977 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.040 0.960 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.260 0.740 46 H 0.063 0.937 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.722 -10.791 6.591 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.298 3.702 3 O -0.419 6.419 4 N -0.347 5.347 5 C -0.022 4.022 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.119 4.119 9 H 0.103 0.897 10 C -0.065 4.065 11 N -0.325 5.325 12 C -0.064 4.064 13 C -0.104 4.104 14 H 0.084 0.916 15 C -0.192 4.192 16 C -0.009 4.009 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.010 4.010 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.158 0.842 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.290 -10.341 5.914 27.955 hybrid contribution 0.761 0.611 0.634 1.164 sum -24.528 -9.730 6.548 27.188 Atomic orbital electron populations 1.22042 0.92073 1.04388 1.05363 1.20809 0.90584 0.83160 0.75606 1.90754 1.70553 1.30980 1.49621 1.48160 1.07430 1.06042 1.73042 1.21928 0.97332 0.84046 0.98943 1.21920 0.96764 0.99728 0.98884 1.21549 0.94571 0.96790 1.02409 1.21553 0.95497 0.95444 0.99419 0.89745 1.21925 0.92388 0.92844 0.99327 1.60601 1.09546 1.06543 1.55768 1.22133 0.85258 0.99695 0.99283 1.21227 0.99122 0.91990 0.98028 0.91643 1.21742 0.98224 1.01023 0.98192 1.19104 0.87920 0.97040 0.96825 1.21221 0.92361 0.96722 1.44791 0.92593 1.25017 0.97309 0.96425 0.95799 1.69956 1.04072 1.29902 1.49865 0.86687 0.77778 0.84438 0.79277 1.20299 1.21399 1.20263 1.21713 0.79227 1.02181 0.97886 0.89965 0.88860 0.88680 0.91255 0.89063 0.91266 0.90597 0.91237 0.91750 0.95501 0.90756 0.84227 0.95872 0.91495 0.91846 0.94910 0.94073 0.96779 0.96693 0.93082 0.91844 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 10.12 36.01 0.36 -0.77 16 2 C 0.51 5.66 7.80 -10.98 -0.09 5.58 16 3 O -0.54 -8.74 16.53 5.56 0.09 -8.64 16 4 N -0.61 -5.79 2.97 -172.76 -0.51 -6.31 16 5 C 0.10 0.57 6.36 -3.71 -0.02 0.55 16 6 C -0.13 -0.76 6.08 -26.61 -0.16 -0.92 16 7 C -0.12 -0.85 5.17 -26.69 -0.14 -0.99 16 8 C -0.10 -1.00 2.55 -90.50 -0.23 -1.24 16 9 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 10 C 0.07 0.79 5.15 -3.83 -0.02 0.77 16 11 N -0.69 -10.57 6.50 -113.78 -0.74 -11.31 16 12 C 0.06 1.16 5.14 -3.82 -0.02 1.14 16 13 C -0.08 -1.81 2.55 -90.62 -0.23 -2.04 16 14 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 15 C -0.13 -2.67 8.77 37.16 0.33 -2.34 16 16 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 17 C -0.51 -14.72 8.41 -34.44 -0.29 -15.01 16 18 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 21 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.11 1.22 5.34 -3.71 -0.02 1.20 16 26 H 0.08 0.30 5.10 -51.93 -0.27 0.03 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.32 5.04 -51.92 -0.26 0.06 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.34 5.13 5.38 -39.29 -0.21 4.92 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 41 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 1.32 5.85 -51.93 -0.30 1.01 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -33.50 362.25 -9.18 -42.67 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.44 Total: -0.38 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.75 Total: -11.92 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.52 Total: -44.34 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.50 -9.18 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602638673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.780 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds