Wall clock time and date at job start Tue Mar 31 2020 05:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21282 * 120.00250 * 2 1 4 4 N 1.34787 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.62918 * 0.02562 * 4 2 1 6 6 C 1.53187 * 108.77227 * 233.33389 * 5 4 2 7 7 C 1.53038 * 109.31606 * 305.36475 * 6 5 4 8 8 C 1.53041 * 109.53768 * 61.36503 * 7 6 5 9 9 H 1.08994 * 109.49464 * 58.62048 * 8 7 6 10 10 C 1.53004 * 109.49852 * 178.68572 * 8 7 6 11 11 N 1.46892 * 109.46855 * 185.00003 * 10 8 7 12 12 C 1.46904 * 110.99819 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47250 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.46962 * 305.00045 * 13 12 11 15 15 C 1.52994 * 109.47143 * 65.00171 * 13 12 11 16 16 C 1.53004 * 109.47070 * 185.00034 * 13 12 11 17 17 C 1.50706 * 109.46864 * 174.99697 * 16 13 12 18 18 H 1.08002 * 120.00200 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99569 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99981 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99639 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47035 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47142 * 119.99800 * 21 19 17 24 24 H 1.48493 * 109.47024 * 239.99935 * 21 19 17 25 25 C 1.46924 * 120.63033 * 179.72182 * 4 2 1 26 26 H 1.08997 * 109.47248 * 240.00135 * 1 2 3 27 27 H 1.09004 * 109.46773 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47228 * 119.99592 * 1 2 3 29 29 H 1.09002 * 109.58798 * 353.11768 * 5 4 2 30 30 H 1.08996 * 109.58371 * 113.54749 * 5 4 2 31 31 H 1.08999 * 109.50002 * 65.31872 * 6 5 4 32 32 H 1.09001 * 109.49774 * 185.38216 * 6 5 4 33 33 H 1.09003 * 109.46482 * 181.38835 * 7 6 5 34 34 H 1.09007 * 109.46056 * 301.36333 * 7 6 5 35 35 H 1.08997 * 109.46964 * 305.00077 * 10 8 7 36 36 H 1.09002 * 109.46654 * 65.00132 * 10 8 7 37 37 H 1.00903 * 111.00739 * 303.95263 * 11 10 8 38 38 H 1.08998 * 109.47191 * 300.00063 * 12 11 10 39 39 H 1.09002 * 109.46742 * 60.00220 * 12 11 10 40 40 H 1.09005 * 109.47161 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.47489 * 299.99990 * 15 13 12 42 42 H 1.09001 * 109.47294 * 60.00078 * 15 13 12 43 43 H 1.08990 * 109.47317 * 294.99934 * 16 13 12 44 44 H 1.09003 * 109.46890 * 55.00152 * 16 13 12 45 45 H 0.96995 * 119.99424 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.58516 * 246.45674 * 25 4 2 47 47 H 1.09002 * 109.58479 * 6.87832 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4602 -2.4477 0.0005 6 6 1.9727 -3.3018 1.1643 7 6 3.4937 -3.4367 1.0619 8 6 4.1380 -2.0519 1.1588 9 1 3.8580 -1.5857 2.1034 10 6 5.6601 -2.1908 1.0891 11 7 6.2818 -0.8770 1.3019 12 6 7.7466 -0.9720 1.2424 13 6 8.3571 0.4126 1.4686 14 1 7.9375 1.1165 0.7498 15 6 8.0395 0.8841 2.8890 16 6 9.8740 0.3376 1.2833 17 6 10.4614 1.7218 1.3845 18 1 9.8173 2.5700 1.5636 19 6 11.8212 1.9051 1.2486 20 7 12.6054 0.8723 1.0301 21 14 12.5494 3.6207 1.3748 22 1 11.4631 4.6027 1.6217 23 1 13.5213 3.6646 2.4967 24 1 13.2426 3.9588 0.1059 25 6 3.6500 -1.1835 -0.0056 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 0.3924 -2.2660 0.1231 30 1 1.6389 -2.9675 -0.9407 31 1 1.7127 -2.8237 2.1087 32 1 1.5156 -4.2903 1.1190 33 1 3.8583 -4.0645 1.8749 34 1 3.7544 -3.8921 0.1064 35 1 5.9975 -2.8819 1.8615 36 1 5.9455 -2.5734 0.1092 37 1 5.9357 -0.2011 0.6374 38 1 8.0982 -1.6545 2.0160 39 1 8.0468 -1.3464 0.2637 40 1 8.4740 1.8707 3.0500 41 1 6.9589 0.9375 3.0211 42 1 8.4590 0.1802 3.6078 43 1 10.3037 -0.2971 2.0581 44 1 10.0999 -0.0821 0.3030 45 1 13.5620 1.0013 0.9348 46 1 4.0069 -1.6005 -0.9474 47 1 4.0271 -0.1677 0.1129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602638675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:56 Heat of formation + Delta-G solvation = -66.219727 kcal Electronic energy + Delta-G solvation = -22504.083256 eV Core-core repulsion = 19299.377638 eV Total energy + Delta-G solvation = -3204.705618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42872 -38.08973 -36.65452 -34.58539 -33.01754 -32.12035 -31.13236 -29.80467 -26.90369 -26.02687 -25.41745 -24.34948 -22.57395 -21.67306 -20.68851 -19.31166 -18.94945 -17.31801 -16.37067 -16.25984 -15.71340 -15.33809 -14.89226 -14.64980 -14.47160 -14.19361 -13.98808 -13.53845 -13.40118 -13.24237 -13.07249 -12.85888 -12.40626 -12.38508 -12.16452 -11.64684 -11.59918 -11.40235 -11.31812 -11.07154 -10.95001 -10.80700 -10.72808 -10.66520 -10.23617 -10.14343 -9.97904 -9.64331 -9.08891 -8.90132 -8.87596 -8.28968 -8.07713 -5.93717 -3.94298 2.42075 2.74648 3.35508 3.42892 3.47962 4.19960 4.30444 4.45294 4.52818 4.53627 4.69698 4.77035 4.89029 4.97904 5.02064 5.03929 5.21548 5.36897 5.41425 5.42344 5.43410 5.50703 5.53280 5.68126 5.73462 5.78071 5.83285 5.91524 6.00731 6.17724 6.21980 6.28464 6.47256 6.61168 6.75843 7.07472 7.15729 7.24568 7.25939 7.41733 7.67889 7.74985 7.90485 7.96575 8.07120 8.51694 9.12445 9.68996 11.17960 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.002911 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.574021 B = 9615.837067 C =10368.796642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.541 6.541 4 N -0.614 5.614 5 C 0.106 3.894 6 C -0.134 4.134 7 C -0.115 4.115 8 C -0.099 4.099 9 H 0.084 0.916 10 C 0.066 3.934 11 N -0.689 5.689 12 C 0.064 3.936 13 C -0.083 4.083 14 H 0.053 0.947 15 C -0.122 4.122 16 C 0.027 3.973 17 C -0.510 4.510 18 H 0.057 0.943 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.112 3.888 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.027 0.973 37 H 0.337 0.663 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.258 0.742 46 H 0.063 0.937 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.176 -11.514 -1.861 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.418 6.418 4 N -0.348 5.348 5 C -0.017 4.017 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.118 4.118 9 H 0.102 0.898 10 C -0.064 4.064 11 N -0.320 5.320 12 C -0.064 4.064 13 C -0.102 4.102 14 H 0.072 0.928 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.011 4.011 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.155 0.845 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.701 -11.028 -1.204 27.993 hybrid contribution 0.725 0.559 -0.930 1.305 sum -24.976 -10.469 -2.135 27.165 Atomic orbital electron populations 1.21938 0.91982 1.05431 1.03894 1.20828 0.90599 0.83128 0.75710 1.90758 1.70657 1.30949 1.49387 1.48144 1.07058 1.05900 1.73676 1.21772 0.96654 0.84214 0.99049 1.21909 0.96579 0.99998 0.98785 1.21549 0.94545 0.96770 1.02457 1.21548 0.95064 0.95614 0.99612 0.89765 1.21919 0.92352 0.92519 0.99648 1.60556 1.07031 1.07511 1.56937 1.22145 0.85462 0.99658 0.99141 1.21204 0.98783 0.93143 0.97088 0.92833 1.21579 0.99202 1.00962 0.96212 1.19126 0.88030 0.97127 0.96758 1.21298 0.92072 0.93480 1.48020 0.92482 1.25026 0.97409 0.96626 0.95569 1.69980 1.04194 1.29505 1.50130 0.86574 0.79180 0.84980 0.77526 1.19706 1.21102 1.21140 1.21727 0.78947 1.02502 0.97883 0.89471 0.89014 0.89546 0.89649 0.91305 0.91318 0.90603 0.91275 0.91751 0.90832 0.95500 0.84450 0.91584 0.95821 0.92805 0.93925 0.94231 0.96575 0.96961 0.93208 0.91838 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 8.67 36.00 0.31 -0.77 16 2 C 0.51 5.63 7.81 -10.98 -0.09 5.55 16 3 O -0.54 -8.72 16.50 5.56 0.09 -8.62 16 4 N -0.61 -5.76 2.97 -172.75 -0.51 -6.27 16 5 C 0.11 0.60 6.34 -3.71 -0.02 0.58 16 6 C -0.13 -0.76 6.08 -26.62 -0.16 -0.92 16 7 C -0.12 -0.84 5.17 -26.69 -0.14 -0.98 16 8 C -0.10 -0.98 2.55 -90.48 -0.23 -1.21 16 9 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 10 C 0.07 0.78 5.15 -3.83 -0.02 0.76 16 11 N -0.69 -10.31 5.95 -113.78 -0.68 -10.99 16 12 C 0.06 1.15 5.07 -3.82 -0.02 1.13 16 13 C -0.08 -1.77 2.48 -90.62 -0.22 -2.00 16 14 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.12 -2.50 8.89 37.15 0.33 -2.17 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 17 C -0.51 -14.69 8.41 -34.44 -0.29 -14.98 16 18 H 0.06 1.61 7.06 -52.49 -0.37 1.24 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 21 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.11 1.21 5.35 -3.69 -0.02 1.19 16 26 H 0.09 0.38 7.69 -51.93 -0.40 -0.02 16 27 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.09 0.36 7.95 -51.93 -0.41 -0.05 16 29 H 0.09 0.31 5.94 -51.93 -0.31 0.00 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.34 5.04 7.13 -39.29 -0.28 4.76 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 41 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 1.32 5.82 -51.93 -0.30 1.02 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -33.56 366.26 -9.39 -42.95 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.73 Total: -1.26 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.79 Total: -11.76 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.45 Total: -44.03 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.56 -9.39 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602638675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.270 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds