Wall clock time and date at job start Tue Mar 31 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21291 * 119.99601 * 2 1 4 4 N 1.34771 * 120.00281 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.63234 * 0.02562 * 4 2 1 6 6 C 1.53195 * 108.77845 * 233.62780 * 5 4 2 7 7 C 1.53039 * 109.31257 * 305.36660 * 6 5 4 8 8 C 1.53046 * 109.52798 * 61.36716 * 7 6 5 9 9 H 1.08998 * 109.49692 * 58.57850 * 8 7 6 10 10 C 1.53001 * 109.49566 * 178.67884 * 8 7 6 11 11 N 1.46905 * 109.46806 * 185.00112 * 10 8 7 12 12 C 1.46897 * 110.99797 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47092 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47077 * 54.99880 * 13 12 11 15 15 C 1.52995 * 109.46759 * 294.99762 * 13 12 11 16 16 C 1.53000 * 109.47252 * 175.00050 * 13 12 11 17 17 C 1.50700 * 109.47371 * 185.00003 * 16 13 12 18 18 H 1.08000 * 119.99360 * 359.97438 * 17 16 13 19 19 C 1.37869 * 120.00090 * 180.02562 * 17 16 13 20 20 N 1.31518 * 120.00407 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00021 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46830 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47123 * 119.99867 * 21 19 17 24 24 H 1.48501 * 109.47182 * 239.99821 * 21 19 17 25 25 C 1.46931 * 120.63154 * 180.02562 * 4 2 1 26 26 H 1.08995 * 109.46812 * 239.99468 * 1 2 3 27 27 H 1.08992 * 109.47710 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47185 * 120.00138 * 1 2 3 29 29 H 1.08997 * 109.59005 * 113.84256 * 5 4 2 30 30 H 1.09000 * 109.58835 * 353.41592 * 5 4 2 31 31 H 1.08997 * 109.50026 * 185.40903 * 6 5 4 32 32 H 1.09000 * 109.49142 * 65.31548 * 6 5 4 33 33 H 1.09002 * 109.46050 * 181.38302 * 7 6 5 34 34 H 1.09004 * 109.46034 * 301.35518 * 7 6 5 35 35 H 1.09003 * 109.47118 * 304.99914 * 10 8 7 36 36 H 1.09001 * 109.47354 * 65.00138 * 10 8 7 37 37 H 1.00902 * 110.99788 * 303.94916 * 11 10 8 38 38 H 1.09007 * 109.47337 * 299.99846 * 12 11 10 39 39 H 1.09002 * 109.47151 * 59.99608 * 12 11 10 40 40 H 1.09002 * 109.47423 * 299.99907 * 15 13 12 41 41 H 1.08998 * 109.47575 * 60.00651 * 15 13 12 42 42 H 1.09006 * 109.46847 * 179.97438 * 15 13 12 43 43 H 1.09010 * 109.46982 * 305.00144 * 16 13 12 44 44 H 1.09003 * 109.47067 * 64.99451 * 16 13 12 45 45 H 0.96995 * 120.00249 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.58959 * 246.15740 * 25 4 2 47 47 H 1.09003 * 109.58181 * 6.44223 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4604 -2.4475 -0.0017 6 6 1.9678 -3.2999 1.1658 7 6 3.4892 -3.4347 1.0704 8 6 4.1327 -2.0495 1.1681 9 1 3.8477 -1.5817 2.1105 10 6 5.6551 -2.1881 1.1057 11 7 6.2756 -0.8738 1.3194 12 6 7.7406 -0.9685 1.2667 13 6 8.3496 0.4166 1.4937 14 1 7.9741 0.8297 2.4299 15 6 7.9618 1.3399 0.3370 16 6 9.8735 0.2986 1.5631 17 6 10.4661 1.6405 1.9083 18 1 9.8204 2.4923 2.0623 19 6 11.8325 1.7807 2.0265 20 7 12.6189 0.7434 1.8385 21 14 12.5672 3.4443 2.4537 22 1 11.4774 4.4405 2.6126 23 1 13.3298 3.3373 3.7235 24 1 13.4784 3.8776 1.3641 25 6 3.6501 -1.1832 0.0000 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.6434 -2.9690 -0.9412 30 1 0.3921 -2.2658 0.1158 31 1 1.5113 -4.2886 1.1198 32 1 1.7034 -2.8201 2.1082 33 1 3.8502 -4.0611 1.8861 34 1 3.7542 -3.8917 0.1169 35 1 5.9892 -2.8780 1.8808 36 1 5.9452 -2.5722 0.1278 37 1 5.9323 -0.1991 0.6522 38 1 8.0888 -1.6497 2.0432 39 1 8.0455 -1.3444 0.2901 40 1 8.3373 0.9268 -0.5993 41 1 6.8763 1.4241 0.2875 42 1 8.3954 2.3268 0.4989 43 1 10.1471 -0.4274 2.3289 44 1 10.2568 -0.0304 0.5972 45 1 13.5802 0.8421 1.9220 46 1 4.0113 -1.6017 -0.9394 47 1 4.0266 -0.1669 0.1161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602639100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:58 Heat of formation + Delta-G solvation = -65.951611 kcal Electronic energy + Delta-G solvation = -22541.350522 eV Core-core repulsion = 19336.656531 eV Total energy + Delta-G solvation = -3204.693992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43478 -38.10386 -36.72070 -34.57875 -33.01605 -32.12274 -31.12284 -29.79682 -26.94883 -26.08545 -25.40756 -24.49598 -22.56346 -21.63944 -20.67071 -19.30027 -18.85944 -17.33683 -16.50331 -16.23387 -15.71395 -15.43786 -14.90138 -14.77161 -14.47638 -14.11978 -13.79500 -13.54123 -13.46496 -13.28944 -13.06988 -12.86267 -12.42912 -12.37534 -12.18545 -11.81725 -11.62717 -11.47273 -11.32590 -11.07459 -10.93037 -10.82330 -10.74004 -10.67748 -10.27393 -10.11692 -9.98040 -9.66399 -9.09590 -8.90907 -8.88236 -8.29139 -8.10012 -5.93754 -3.94462 2.41595 2.74253 3.35473 3.42881 3.47863 4.19961 4.30285 4.45260 4.52752 4.53564 4.69436 4.76922 4.88808 4.97741 5.01863 5.03622 5.21186 5.36961 5.41258 5.42186 5.43257 5.50306 5.52762 5.68212 5.75282 5.77929 5.83887 5.87628 5.99610 6.13331 6.16441 6.27896 6.32184 6.53577 6.62815 7.00334 7.15340 7.17655 7.23026 7.42016 7.68441 7.74890 7.90960 7.96111 8.07048 8.51436 9.12256 9.68905 11.17893 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027667 B = 0.002899 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.781594 B = 9657.791804 C =10461.371781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.541 6.541 4 N -0.613 5.613 5 C 0.106 3.894 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.099 4.099 9 H 0.084 0.916 10 C 0.065 3.935 11 N -0.692 5.692 12 C 0.065 3.935 13 C -0.085 4.085 14 H 0.065 0.935 15 C -0.134 4.134 16 C 0.028 3.972 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.112 3.888 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.338 0.662 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.014 0.986 45 H 0.258 0.742 46 H 0.063 0.937 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.141 -11.050 -4.527 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.418 6.418 4 N -0.348 5.348 5 C -0.017 4.017 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.119 4.119 9 H 0.103 0.897 10 C -0.065 4.065 11 N -0.324 5.324 12 C -0.064 4.064 13 C -0.104 4.104 14 H 0.084 0.916 15 C -0.192 4.192 16 C -0.010 4.010 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.011 4.011 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.672 -10.563 -3.856 28.027 hybrid contribution 0.721 0.539 -0.726 1.157 sum -24.951 -10.024 -4.583 27.277 Atomic orbital electron populations 1.21936 0.91966 1.05435 1.03902 1.20829 0.90607 0.83128 0.75704 1.90758 1.70670 1.30942 1.49405 1.48139 1.07042 1.05915 1.73660 1.21775 0.96674 0.84208 0.99038 1.21915 0.96588 1.00020 0.98772 1.21549 0.94545 0.96738 1.02480 1.21554 0.95098 0.95652 0.99589 0.89735 1.21927 0.92361 0.92529 0.99674 1.60602 1.07216 1.07633 1.56986 1.22134 0.85446 0.99580 0.99213 1.21225 0.98830 0.92099 0.98204 0.91635 1.21743 0.98138 1.01206 0.98096 1.19116 0.87806 0.97081 0.96969 1.21294 0.91510 0.95553 1.46540 0.92481 1.25021 0.97429 0.96469 0.95694 1.69978 1.03797 1.29475 1.50550 0.86576 0.79201 0.84551 0.77933 1.19710 1.21100 1.21145 1.21723 0.78981 1.02479 0.97877 0.89461 0.89009 0.89544 0.91288 0.89635 0.90584 0.91301 0.91236 0.91744 0.90767 0.95508 0.84226 0.91500 0.95882 0.94072 0.94909 0.91844 0.96683 0.96772 0.93201 0.91847 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 8.67 36.00 0.31 -0.77 16 2 C 0.51 5.63 7.81 -10.99 -0.09 5.54 16 3 O -0.54 -8.71 16.50 5.55 0.09 -8.62 16 4 N -0.61 -5.77 2.97 -172.75 -0.51 -6.28 16 5 C 0.11 0.60 6.34 -3.71 -0.02 0.58 16 6 C -0.13 -0.77 6.08 -26.61 -0.16 -0.93 16 7 C -0.11 -0.85 5.17 -26.69 -0.14 -0.99 16 8 C -0.10 -1.01 2.55 -90.48 -0.23 -1.24 16 9 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 10 C 0.07 0.79 5.15 -3.82 -0.02 0.77 16 11 N -0.69 -10.58 6.50 -113.77 -0.74 -11.32 16 12 C 0.06 1.16 5.14 -3.83 -0.02 1.14 16 13 C -0.08 -1.81 2.55 -90.62 -0.23 -2.04 16 14 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 15 C -0.13 -2.67 8.77 37.15 0.33 -2.34 16 16 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 17 C -0.51 -14.66 8.41 -34.44 -0.29 -14.95 16 18 H 0.06 1.61 7.06 -52.49 -0.37 1.24 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 21 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.11 1.22 5.35 -3.69 -0.02 1.20 16 26 H 0.09 0.38 7.69 -51.93 -0.40 -0.02 16 27 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.09 0.36 7.94 -51.93 -0.41 -0.06 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.30 5.93 -51.93 -0.31 0.00 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.34 5.14 5.38 -39.29 -0.21 4.93 16 38 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 42 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 43 H 0.01 0.42 8.14 -51.92 -0.42 -0.01 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 1.32 5.82 -51.93 -0.30 1.02 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -33.52 364.00 -9.37 -42.89 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.61 Total: -0.67 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.80 Total: -11.92 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.52 Total: -44.33 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.52 -9.37 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602639100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.058 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds