Wall clock time and date at job start Tue Mar 31 2020 05:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21277 * 120.00109 * 2 1 4 4 N 1.34782 * 119.99721 * 179.97438 * 2 1 3 5 5 C 1.46922 * 120.62982 * 174.52907 * 4 2 1 6 6 C 1.53195 * 108.77578 * 126.41302 * 5 4 2 7 7 C 1.53037 * 109.31121 * 54.63395 * 6 5 4 8 8 C 1.53037 * 109.54057 * 298.63739 * 7 6 5 9 9 H 1.09004 * 109.52362 * 301.39149 * 8 7 6 10 10 C 1.53005 * 109.49919 * 181.31664 * 8 7 6 11 11 N 1.46901 * 109.47058 * 175.15916 * 10 8 7 12 12 C 1.46898 * 110.99744 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46992 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.47369 * 55.00266 * 13 12 11 15 15 C 1.53003 * 109.47019 * 295.00031 * 13 12 11 16 16 C 1.53003 * 109.47371 * 175.00126 * 13 12 11 17 17 C 1.50693 * 109.47232 * 185.00007 * 16 13 12 18 18 H 1.07996 * 120.00363 * 359.97438 * 17 16 13 19 19 C 1.37886 * 119.99647 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99521 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00128 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46991 * 90.00384 * 21 19 17 23 23 H 1.48502 * 109.47079 * 209.99966 * 21 19 17 24 24 H 1.48500 * 109.47324 * 329.99960 * 21 19 17 25 25 C 1.46927 * 120.62930 * 354.55050 * 4 2 1 26 26 H 1.08996 * 109.47096 * 274.66842 * 1 2 3 27 27 H 1.09005 * 109.46690 * 34.66818 * 1 2 3 28 28 H 1.08999 * 109.47211 * 154.66781 * 1 2 3 29 29 H 1.09002 * 109.58833 * 246.19912 * 5 4 2 30 30 H 1.09004 * 109.58620 * 6.63070 * 5 4 2 31 31 H 1.09001 * 109.49891 * 174.58591 * 6 5 4 32 32 H 1.09000 * 109.49840 * 294.68751 * 6 5 4 33 33 H 1.08998 * 109.45972 * 178.61234 * 7 6 5 34 34 H 1.09008 * 109.45810 * 58.65936 * 7 6 5 35 35 H 1.09000 * 109.47039 * 55.16282 * 10 8 7 36 36 H 1.08995 * 109.47181 * 295.16175 * 10 8 7 37 37 H 1.00905 * 110.99915 * 56.04968 * 11 10 8 38 38 H 1.09000 * 109.47386 * 300.00158 * 12 11 10 39 39 H 1.08997 * 109.47247 * 60.00296 * 12 11 10 40 40 H 1.08996 * 109.47103 * 180.02562 * 15 13 12 41 41 H 1.09006 * 109.46605 * 299.99745 * 15 13 12 42 42 H 1.08990 * 109.46953 * 59.99831 * 15 13 12 43 43 H 1.09005 * 109.46744 * 304.99930 * 16 13 12 44 44 H 1.09007 * 109.47025 * 64.99531 * 16 13 12 45 45 H 0.97000 * 119.99703 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.58513 * 113.80118 * 25 4 2 47 47 H 1.08996 * 109.58788 * 353.37730 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6450 -1.1864 -0.1200 6 6 4.2250 -1.9966 1.0437 7 6 3.5780 -3.3833 1.0669 8 6 2.0695 -3.2408 1.2820 9 1 1.8832 -2.7161 2.2191 10 6 1.4283 -4.6289 1.3379 11 7 0.0010 -4.4963 1.6595 12 6 -0.6491 -5.8121 1.7211 13 6 -2.1311 -5.6335 2.0568 14 1 -2.5881 -4.9564 1.3352 15 6 -2.2683 -5.0479 3.4637 16 6 -2.8345 -6.9910 1.9987 17 6 -4.3144 -6.7993 2.2081 18 1 -4.7135 -5.8085 2.3672 19 6 -5.1591 -7.8891 2.1965 20 7 -6.4507 -7.7218 2.3798 21 14 -4.4691 -9.6029 1.9206 22 1 -4.1100 -10.2083 3.2282 23 1 -5.4907 -10.4456 1.2488 24 1 -3.2580 -9.5171 1.0655 25 6 1.4651 -2.4447 0.1212 26 1 -0.3633 0.0836 1.0242 27 1 -0.3633 0.8453 -0.5846 28 1 -0.3633 -0.9288 -0.4397 29 1 3.9278 -1.6503 -1.0650 30 1 4.0281 -0.1667 -0.0819 31 1 5.3023 -2.0999 0.9138 32 1 4.0188 -1.4832 1.9828 33 1 4.0068 -3.9705 1.8790 34 1 3.7636 -3.8866 0.1179 35 1 1.9199 -5.2255 2.1063 36 1 1.5388 -5.1194 0.3709 37 1 -0.4644 -3.8940 0.9970 38 1 -0.5530 -6.3105 0.7565 39 1 -0.1720 -6.4174 2.4919 40 1 -3.3241 -4.9211 3.7030 41 1 -1.8113 -5.7252 4.1852 42 1 -1.7673 -4.0809 3.5051 43 1 -2.6616 -7.4483 1.0244 44 1 -2.4379 -7.6395 2.7800 45 1 -7.0449 -8.4885 2.3721 46 1 1.5702 -3.0113 -0.8042 47 1 0.4100 -2.2553 0.3182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602639101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:00 Heat of formation + Delta-G solvation = -61.746914 kcal Electronic energy + Delta-G solvation = -22613.357764 eV Core-core repulsion = 19408.846102 eV Total energy + Delta-G solvation = -3204.511662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48148 -38.23477 -36.77189 -34.51888 -33.33873 -32.34831 -31.12249 -29.62802 -27.56298 -26.20164 -25.61689 -24.35302 -22.32377 -21.62789 -20.85153 -19.33395 -19.08169 -17.38898 -16.77453 -16.37639 -15.70453 -15.50121 -14.96933 -14.78003 -14.44506 -14.27051 -13.89740 -13.73104 -13.52468 -13.36667 -13.20911 -12.82484 -12.50090 -12.34835 -12.27412 -11.82036 -11.73320 -11.61021 -11.42448 -11.21156 -11.00203 -10.91799 -10.90629 -10.73810 -10.45514 -9.99670 -9.82971 -9.75777 -9.42834 -9.08038 -8.92913 -8.53459 -8.29065 -6.03727 -4.00751 2.38636 2.72625 3.29665 3.37276 3.40000 4.10497 4.29299 4.42477 4.44974 4.53582 4.63366 4.72600 4.91346 4.99474 5.06759 5.12173 5.23492 5.29308 5.30054 5.35497 5.41406 5.48109 5.52483 5.58530 5.64505 5.67428 5.74977 5.76306 5.87099 5.98764 6.08835 6.22050 6.26727 6.37863 6.54952 6.80765 6.99784 7.10472 7.12404 7.18251 7.27906 7.41872 7.50660 7.81015 7.91816 8.55538 9.02048 9.59159 11.09723 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.003040 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.269374 B = 9207.032125 C = 9893.524332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.515 3.485 3 O -0.553 6.553 4 N -0.613 5.613 5 C 0.109 3.891 6 C -0.133 4.133 7 C -0.115 4.115 8 C -0.100 4.100 9 H 0.086 0.914 10 C 0.065 3.935 11 N -0.687 5.687 12 C 0.061 3.939 13 C -0.074 4.074 14 H 0.059 0.941 15 C -0.125 4.125 16 C -0.009 4.009 17 C -0.513 4.513 18 H 0.074 0.926 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.106 3.894 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.335 0.665 38 H 0.024 0.976 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.068 0.932 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.539 9.967 -5.072 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.305 3.695 3 O -0.431 6.431 4 N -0.347 5.347 5 C -0.014 4.014 6 C -0.171 4.171 7 C -0.153 4.153 8 C -0.120 4.120 9 H 0.105 0.895 10 C -0.066 4.066 11 N -0.318 5.318 12 C -0.068 4.068 13 C -0.093 4.093 14 H 0.078 0.922 15 C -0.182 4.182 16 C -0.047 4.047 17 C -0.551 4.551 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.192 1.192 25 C -0.017 4.017 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.153 0.847 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.789 10.464 -4.391 23.684 hybrid contribution 0.135 -1.472 -1.050 1.813 sum 20.924 8.992 -5.441 23.415 Atomic orbital electron populations 1.21992 0.91487 1.04911 1.05353 1.20885 0.90791 0.82884 0.74952 1.90693 1.70812 1.31142 1.50447 1.48155 1.07301 1.06297 1.72910 1.21596 0.79646 1.02072 0.98057 1.21896 1.00030 0.96068 0.99126 1.21547 0.94579 0.96811 1.02341 1.21554 0.94840 0.96254 0.99315 0.89546 1.21949 0.89793 0.95335 0.99473 1.60560 1.01657 1.14503 1.55086 1.22185 0.96279 0.88985 0.99303 1.21013 0.91375 0.99293 0.97600 0.92233 1.21600 1.01616 0.99090 0.95886 1.19613 0.96583 0.92465 0.96046 1.21130 0.89798 0.95518 1.48658 0.90819 1.25037 0.94737 0.99023 0.94817 1.69916 1.02947 1.30780 1.50779 0.86803 0.78987 0.84857 0.78741 1.20368 1.21507 1.19166 1.21943 0.97172 0.83970 0.98576 0.88401 0.88845 0.89774 0.91636 0.89087 0.90708 0.91389 0.91287 0.91760 0.90687 0.95329 0.84702 0.95753 0.91478 0.92245 0.94240 0.93696 0.96983 0.97072 0.92819 0.91416 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.47 36.01 0.34 -1.08 16 2 C 0.52 5.70 7.80 -10.98 -0.09 5.62 16 3 O -0.55 -8.25 16.52 5.56 0.09 -8.16 16 4 N -0.61 -5.67 2.97 -172.77 -0.51 -6.18 16 5 C 0.11 0.91 6.44 -3.71 -0.02 0.89 16 6 C -0.13 -0.94 6.08 -26.61 -0.16 -1.10 16 7 C -0.11 -0.80 5.17 -26.69 -0.14 -0.94 16 8 C -0.10 -0.81 2.55 -90.50 -0.23 -1.04 16 9 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 10 C 0.06 0.61 5.15 -3.82 -0.02 0.59 16 11 N -0.69 -8.10 5.95 -113.78 -0.68 -8.77 16 12 C 0.06 0.91 5.07 -3.82 -0.02 0.89 16 13 C -0.07 -1.37 2.48 -90.62 -0.22 -1.59 16 14 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.12 -2.27 8.89 37.16 0.33 -1.94 16 16 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 17 C -0.51 -14.20 8.96 -34.44 -0.31 -14.51 16 18 H 0.07 2.19 7.30 -52.49 -0.38 1.81 16 19 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 20 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 21 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 25 C 0.11 0.82 5.06 -3.71 -0.02 0.80 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.53 6.20 -51.93 -0.32 0.21 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.89 7.00 -51.93 -0.36 0.53 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.33 3.61 7.12 -39.29 -0.28 3.33 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 43 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 44 H 0.01 0.26 7.57 -51.92 -0.39 -0.14 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.68 4.44 -51.93 -0.23 0.45 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -32.18 361.69 -8.92 -41.10 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.62 Total: -1.42 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.75 Total: -11.96 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.42 Total: -41.84 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.18 -8.92 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602639101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.646 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds