Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46540 * 2 1 4 4 C 1.53000 * 109.47276 * 119.99780 * 2 1 3 5 5 C 1.52993 * 109.47212 * 185.00485 * 4 2 1 6 6 H 1.09000 * 109.30007 * 304.57902 * 5 4 2 7 7 C 1.52924 * 109.29893 * 185.00205 * 5 4 2 8 8 C 1.53345 * 108.80962 * 189.05796 * 7 5 4 9 9 C 1.53374 * 108.27540 * 67.41013 * 8 7 5 10 10 C 1.50173 * 109.99040 * 311.25815 * 9 8 7 11 11 O 1.21277 * 118.24764 * 197.52311 * 10 9 8 12 12 N 1.33358 * 123.50966 * 17.55007 * 10 9 8 13 13 N 1.46893 * 109.47568 * 240.00232 * 2 1 3 14 14 C 1.46902 * 110.99889 * 84.99544 * 13 2 1 15 15 C 1.53009 * 109.46784 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47169 * 299.99934 * 15 14 13 17 17 C 1.52996 * 109.47065 * 60.00294 * 15 14 13 18 18 C 1.50699 * 109.46862 * 180.02562 * 15 14 13 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00075 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99861 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00346 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47197 * 89.99877 * 22 20 18 24 24 H 1.48504 * 109.47314 * 210.00008 * 22 20 18 25 25 H 1.48504 * 109.47207 * 330.00020 * 22 20 18 26 26 H 1.08996 * 109.46955 * 299.99877 * 1 2 3 27 27 H 1.08998 * 109.46809 * 60.00399 * 1 2 3 28 28 H 1.09004 * 109.46540 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47110 * 65.00058 * 4 2 1 30 30 H 1.09002 * 109.46947 * 305.00776 * 4 2 1 31 31 H 1.09002 * 109.60392 * 308.89734 * 7 5 4 32 32 H 1.08997 * 109.60486 * 69.22056 * 7 5 4 33 33 H 1.08993 * 109.67842 * 187.34722 * 8 7 5 34 34 H 1.08998 * 109.67194 * 307.88057 * 8 7 5 35 35 H 1.08996 * 109.38360 * 191.08217 * 9 8 7 36 36 H 1.09002 * 109.32012 * 71.39546 * 9 8 7 37 37 H 0.96996 * 117.94820 * 177.78240 * 12 10 9 38 38 H 1.00902 * 111.00093 * 321.04525 * 13 2 1 39 39 H 1.08998 * 109.47059 * 300.00008 * 14 13 2 40 40 H 1.09002 * 109.46911 * 60.00509 * 14 13 2 41 41 H 1.09008 * 109.46667 * 60.00383 * 16 15 14 42 42 H 1.08997 * 109.47292 * 179.97438 * 16 15 14 43 43 H 1.09002 * 109.47542 * 300.00273 * 16 15 14 44 44 H 1.08998 * 109.47040 * 59.99823 * 17 15 14 45 45 H 1.08997 * 109.47412 * 179.97438 * 17 15 14 46 46 H 1.08996 * 109.47163 * 299.99659 * 17 15 14 47 47 H 0.96998 * 120.00148 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6131 1.3137 6 1 3.9929 -0.9996 0.3888 7 6 4.0806 -1.4389 2.4930 8 6 5.5731 -1.1449 2.6873 9 6 5.7201 0.3083 3.1550 10 6 4.9137 1.2161 2.2714 11 8 5.1623 2.4030 2.2883 12 7 3.9384 0.7871 1.4694 13 7 2.0198 -0.6924 -1.1994 14 6 2.0825 0.2227 -2.3468 15 6 2.5953 -0.5330 -3.5744 16 6 3.9924 -1.0860 -3.2861 17 6 1.6454 -1.6888 -3.8952 18 6 2.6602 0.4059 -4.7514 19 1 2.3649 1.4383 -4.6355 20 6 3.0956 -0.0533 -5.9763 21 7 3.4537 -1.3108 -6.1178 22 14 3.1754 1.1103 -7.4354 23 1 4.5119 1.7561 -7.4811 24 1 2.9511 0.3476 -8.6898 25 1 2.1267 2.1524 -7.2955 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.7518 -1.7715 1.2056 30 1 1.6054 -0.2617 2.1370 31 1 3.5339 -1.1679 3.3962 32 1 3.9409 -2.4998 2.2854 33 1 5.9855 -1.8198 3.4372 34 1 6.0996 -1.2796 1.7424 35 1 6.7698 0.5983 3.1102 36 1 5.3654 0.3942 4.1821 37 1 3.4472 1.4482 0.9572 38 1 1.4498 -1.4979 -1.4100 39 1 1.0871 0.6163 -2.5524 40 1 2.7589 1.0464 -2.1181 41 1 3.9457 -1.7651 -2.4347 42 1 4.3575 -1.6248 -4.1605 43 1 4.6691 -0.2626 -3.0576 44 1 0.6501 -1.2948 -4.1006 45 1 2.0104 -2.2269 -4.7700 46 1 1.5989 -2.3678 -3.0439 47 1 3.7604 -1.6337 -6.9795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = -63.618516 kcal Electronic energy + Delta-G solvation = -23591.628927 eV Core-core repulsion = 20387.036107 eV Total energy + Delta-G solvation = -3204.592821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31250 -37.92863 -36.55933 -34.97699 -33.03234 -31.72772 -30.43375 -28.84979 -26.82998 -25.58720 -25.23023 -24.00943 -23.25753 -22.20095 -20.41081 -19.13896 -18.49251 -17.16558 -16.19733 -15.84723 -15.50173 -15.07230 -14.78111 -14.33874 -14.23393 -14.12483 -13.74872 -13.40453 -13.24962 -12.86495 -12.48264 -12.32525 -12.11820 -11.99838 -11.75602 -11.34877 -11.21083 -11.15881 -11.10329 -11.05531 -10.81090 -10.74402 -10.60017 -10.48208 -10.19925 -10.06395 -9.65654 -9.41359 -9.07881 -8.92244 -8.63768 -8.29668 -7.72996 -5.92140 -4.02239 2.73574 3.31380 3.38303 3.39796 3.41313 4.42355 4.48643 4.51411 4.64490 4.72768 4.76747 4.99167 5.19598 5.28093 5.33728 5.35739 5.43809 5.52574 5.55540 5.64121 5.71867 5.77032 5.83639 5.93300 5.98375 6.09969 6.21890 6.29441 6.35983 6.44549 6.70122 6.87546 6.89440 7.04856 7.14859 7.34092 7.44860 7.49957 7.70117 7.74441 7.81569 7.93938 8.19812 8.31603 8.33097 8.54953 8.99092 9.63013 11.08294 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.004214 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.967004 B = 6643.422692 C = 7087.121682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 H 0.069 0.931 4 C -0.115 4.115 5 C 0.142 3.858 6 H 0.099 0.901 7 C -0.132 4.132 8 C -0.124 4.124 9 C -0.134 4.134 10 C 0.516 3.484 11 O -0.570 6.570 12 N -0.707 5.707 13 N -0.679 5.679 14 C 0.076 3.924 15 C 0.069 3.931 16 C -0.118 4.118 17 C -0.131 4.131 18 C -0.506 4.506 19 H 0.051 0.949 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.887 3.113 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.398 0.602 38 H 0.339 0.661 39 H 0.013 0.987 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.082 0.918 46 H 0.010 0.990 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -3.565 17.347 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.035 4.035 3 H 0.088 0.912 4 C -0.154 4.154 5 C 0.037 3.963 6 H 0.117 0.883 7 C -0.170 4.170 8 C -0.162 4.162 9 C -0.174 4.174 10 C 0.303 3.697 11 O -0.450 6.450 12 N -0.359 5.359 13 N -0.311 5.311 14 C -0.053 4.053 15 C 0.069 3.931 16 C -0.175 4.175 17 C -0.189 4.189 18 C -0.545 4.545 19 H 0.069 0.931 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.235 0.765 38 H 0.158 0.842 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.101 0.899 46 H 0.029 0.971 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.409 -3.178 17.493 17.784 hybrid contribution -1.237 0.981 -1.335 2.068 sum -1.647 -2.197 16.158 16.389 Atomic orbital electron populations 1.22483 0.97643 1.01903 1.01889 1.21567 0.92314 0.97848 0.91727 0.91237 1.21949 0.94281 1.01847 0.97339 1.21049 0.95302 0.80474 0.99428 0.88344 1.21948 0.95886 1.00844 0.98310 1.21718 0.96817 0.95155 1.02521 1.21671 1.01309 0.94795 0.99639 1.20148 0.80229 0.88947 0.80336 1.90746 1.68425 1.17741 1.68098 1.45710 1.35855 1.09733 1.44631 1.60733 1.56163 1.10149 1.04021 1.22164 0.97789 0.94769 0.90538 1.18080 0.92489 0.92609 0.89935 1.21629 0.97762 0.98543 0.99602 1.21820 0.97772 0.98737 1.00538 1.21108 1.43497 0.95833 0.94077 0.93100 1.24868 0.95221 0.94968 0.98446 1.69827 1.44673 1.13903 1.23959 0.86678 0.78340 0.81045 0.82386 1.20785 1.21339 1.20133 0.92796 0.92423 0.92560 0.90413 0.91822 0.91427 0.89808 0.90712 0.90771 0.88484 0.88688 0.76516 0.84197 0.96841 0.92748 0.96185 0.90829 0.96399 0.96323 0.89895 0.97079 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.16 37.16 0.34 -1.74 16 2 C 0.08 0.95 2.51 -67.71 -0.17 0.78 16 3 H 0.07 0.93 6.11 -51.93 -0.32 0.62 16 4 C -0.12 -1.16 4.53 -26.73 -0.12 -1.28 16 5 C 0.14 1.53 3.04 -68.38 -0.21 1.32 16 6 H 0.10 1.29 7.62 -51.93 -0.40 0.89 16 7 C -0.13 -1.09 5.29 -26.59 -0.14 -1.23 16 8 C -0.12 -1.02 6.06 -26.36 -0.16 -1.18 16 9 C -0.13 -1.31 6.04 -27.94 -0.17 -1.48 16 10 C 0.52 7.13 7.72 -11.87 -0.09 7.04 16 11 O -0.57 -10.36 17.78 5.56 0.10 -10.26 16 12 N -0.71 -8.95 5.12 -54.86 -0.28 -9.23 16 13 N -0.68 -10.50 4.83 -106.72 -0.52 -11.02 16 14 C 0.08 1.48 4.38 -3.82 -0.02 1.47 16 15 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 16 C -0.12 -2.76 8.09 37.16 0.30 -2.46 16 17 C -0.13 -2.97 7.92 37.16 0.29 -2.67 16 18 C -0.51 -13.45 8.01 -34.44 -0.28 -13.72 16 19 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 20 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 21 N -0.88 -24.20 9.35 55.43 0.52 -23.68 16 22 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 5.41 6.89 -40.82 -0.28 5.13 16 38 H 0.34 5.27 6.51 -39.29 -0.26 5.01 16 39 H 0.01 0.27 7.44 -51.93 -0.39 -0.12 16 40 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 41 H 0.02 0.41 7.60 -51.92 -0.39 0.02 16 42 H 0.07 1.92 6.07 -51.93 -0.32 1.61 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 46 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 47 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -29.20 356.49 -8.84 -38.05 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.42 Total: 6.64 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.60 Total: -11.96 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.28 Total: -43.93 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.10 Total: -10.26 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.20 -8.84 -38.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.572 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds