Wall clock time and date at job start Tue Mar 31 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47680 * 2 1 4 4 C 1.52994 * 109.47174 * 239.99497 * 2 1 3 5 5 C 1.53006 * 109.47208 * 175.00387 * 4 2 1 6 6 H 1.09003 * 109.29498 * 55.41860 * 5 4 2 7 7 C 1.52920 * 109.30179 * 174.99805 * 5 4 2 8 8 C 1.53338 * 108.67206 * 170.85815 * 7 5 4 9 9 C 1.53069 * 108.45632 * 292.45077 * 8 7 5 10 10 C 1.50253 * 109.84975 * 48.87730 * 9 8 7 11 11 O 1.21283 * 118.23284 * 162.46863 * 10 9 8 12 12 N 1.33353 * 123.52649 * 342.47248 * 10 9 8 13 13 N 1.46904 * 109.46635 * 119.99786 * 2 1 3 14 14 C 1.46899 * 110.99744 * 274.99623 * 13 2 1 15 15 C 1.53000 * 109.47055 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47504 * 300.00199 * 15 14 13 17 17 C 1.52999 * 109.46948 * 60.00276 * 15 14 13 18 18 C 1.50696 * 109.47383 * 180.02562 * 15 14 13 19 19 H 1.08004 * 120.00118 * 357.61230 * 18 15 14 20 20 C 1.37877 * 120.00305 * 177.60857 * 18 15 14 21 21 N 1.31516 * 120.00173 * 6.35106 * 20 18 15 22 22 Si 1.86800 * 120.00354 * 186.34725 * 20 18 15 23 23 H 1.48501 * 109.47051 * 84.97510 * 22 20 18 24 24 H 1.48493 * 109.47575 * 204.97478 * 22 20 18 25 25 H 1.48500 * 109.47183 * 324.97968 * 22 20 18 26 26 H 1.09009 * 109.46839 * 59.99961 * 1 2 3 27 27 H 1.09001 * 109.47680 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47177 * 300.00783 * 1 2 3 29 29 H 1.08996 * 109.47092 * 55.00569 * 4 2 1 30 30 H 1.08999 * 109.47217 * 295.00093 * 4 2 1 31 31 H 1.09000 * 109.60183 * 51.10341 * 7 5 4 32 32 H 1.08996 * 109.60321 * 290.61947 * 7 5 4 33 33 H 1.09001 * 109.67492 * 52.20617 * 8 7 5 34 34 H 1.09002 * 109.67446 * 172.70647 * 8 7 5 35 35 H 1.09000 * 109.40264 * 169.04713 * 9 8 7 36 36 H 1.09003 * 109.40303 * 288.79086 * 9 8 7 37 37 H 0.97000 * 117.94864 * 182.19178 * 12 10 9 38 38 H 1.00898 * 111.00013 * 38.95299 * 13 2 1 39 39 H 1.08994 * 109.47470 * 300.00008 * 14 13 2 40 40 H 1.09005 * 109.47278 * 60.00642 * 14 13 2 41 41 H 1.09005 * 109.47059 * 65.10441 * 16 15 14 42 42 H 1.09001 * 109.47474 * 185.10451 * 16 15 14 43 43 H 1.08999 * 109.47012 * 305.11345 * 16 15 14 44 44 H 1.09004 * 109.47213 * 60.00133 * 17 15 14 45 45 H 1.09003 * 109.47505 * 180.02562 * 17 15 14 46 46 H 1.08999 * 109.46983 * 299.99996 * 17 15 14 47 47 H 0.97000 * 120.00530 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 1 3.9927 -0.9999 -0.3885 7 6 4.0807 -1.4394 -2.4926 8 6 5.5725 -1.1416 -2.6853 9 6 5.7206 0.3075 -3.1555 10 6 4.9133 1.2157 -2.2717 11 8 5.1616 2.4027 -2.2893 12 7 3.9385 0.7867 -1.4691 13 7 2.0195 -0.6925 1.1995 14 6 2.0824 0.2227 2.3469 15 6 2.5948 -0.5330 3.5746 16 6 1.6448 -1.6887 3.8954 17 6 3.9919 -1.0862 3.2864 18 6 2.6587 0.4056 4.7518 19 1 2.4002 1.4468 4.6269 20 6 3.0470 -0.0647 5.9883 21 7 3.4810 -1.2997 6.1155 22 14 2.9569 1.0521 7.4830 23 1 1.5866 1.0061 8.0534 24 1 3.9334 0.5934 8.5033 25 1 3.2789 2.4448 7.0804 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.6055 -0.2618 -2.1369 30 1 1.7516 -1.7716 -1.2054 31 1 3.5340 -1.1683 -3.3959 32 1 3.9434 -2.5003 -2.2838 33 1 6.0986 -1.2765 -1.7402 34 1 5.9872 -1.8149 -3.4355 35 1 6.7705 0.5970 -3.1111 36 1 5.3659 0.3930 -4.1826 37 1 3.4473 1.4480 -0.9570 38 1 1.4494 -1.4979 1.4101 39 1 2.7588 1.0462 2.1182 40 1 1.0869 0.6165 2.5525 41 1 1.6674 -2.4141 3.0821 42 1 1.9588 -2.1709 4.8212 43 1 0.6314 -1.3044 4.0114 44 1 4.6687 -0.2629 3.0579 45 1 4.3568 -1.6250 4.1609 46 1 3.9453 -1.7652 2.4351 47 1 3.7545 -1.6305 6.9854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:02 Heat of formation + Delta-G solvation = -63.851551 kcal Electronic energy + Delta-G solvation = -23589.346163 eV Core-core repulsion = 20384.743236 eV Total energy + Delta-G solvation = -3204.602926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31547 -37.92613 -36.56054 -34.98510 -33.04270 -31.73119 -30.43681 -28.85366 -26.82892 -25.58581 -25.23037 -24.00604 -23.25174 -22.20128 -20.40954 -19.13979 -18.50065 -17.16540 -16.19595 -15.84543 -15.50025 -15.07181 -14.77898 -14.34021 -14.23509 -14.12415 -13.75086 -13.40455 -13.24844 -12.87048 -12.48631 -12.32670 -12.11871 -12.00098 -11.75842 -11.35522 -11.19688 -11.14686 -11.12106 -11.06663 -10.81682 -10.72075 -10.62816 -10.47861 -10.22140 -10.04271 -9.65020 -9.42133 -9.07087 -8.92031 -8.65977 -8.28249 -7.72922 -5.92562 -4.02221 2.73805 3.31272 3.38129 3.39708 3.41168 4.42243 4.48618 4.51267 4.65206 4.73113 4.76766 4.99108 5.19437 5.28096 5.32742 5.36097 5.43873 5.52491 5.55610 5.64228 5.71910 5.77193 5.83634 5.93328 5.98456 6.09865 6.21746 6.29378 6.35754 6.44105 6.70447 6.85243 6.89480 7.05089 7.14097 7.34939 7.45632 7.50093 7.69475 7.74580 7.80974 7.93486 8.18884 8.31752 8.34290 8.55388 8.98902 9.62679 11.07627 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.004178 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.244148 B = 6700.095399 C = 7112.230932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 H 0.070 0.930 4 C -0.115 4.115 5 C 0.142 3.858 6 H 0.099 0.901 7 C -0.132 4.132 8 C -0.125 4.125 9 C -0.134 4.134 10 C 0.516 3.484 11 O -0.570 6.570 12 N -0.707 5.707 13 N -0.679 5.679 14 C 0.076 3.924 15 C 0.069 3.931 16 C -0.132 4.132 17 C -0.118 4.118 18 C -0.507 4.507 19 H 0.051 0.949 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.886 3.114 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.398 0.602 38 H 0.338 0.662 39 H 0.054 0.946 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.081 0.919 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.075 0.925 46 H 0.018 0.982 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -3.600 -17.322 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.035 4.035 3 H 0.088 0.912 4 C -0.154 4.154 5 C 0.037 3.963 6 H 0.117 0.883 7 C -0.170 4.170 8 C -0.163 4.163 9 C -0.174 4.174 10 C 0.303 3.697 11 O -0.450 6.450 12 N -0.359 5.359 13 N -0.310 5.310 14 C -0.052 4.052 15 C 0.069 3.931 16 C -0.189 4.189 17 C -0.176 4.176 18 C -0.546 4.546 19 H 0.069 0.931 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.715 3.285 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.201 1.201 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.235 0.765 38 H 0.158 0.842 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.100 0.900 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.037 0.963 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.498 -3.210 -17.469 17.769 hybrid contribution -1.358 0.950 1.357 2.141 sum -1.856 -2.261 -16.113 16.376 Atomic orbital electron populations 1.22483 0.97644 1.01900 1.01889 1.21568 0.92311 0.97851 0.91730 0.91231 1.21949 0.94289 1.01844 0.97334 1.21056 0.95298 0.80481 0.99441 0.88336 1.21948 0.95869 1.00836 0.98305 1.21667 0.96846 0.95219 1.02520 1.21636 1.01307 0.94797 0.99629 1.20177 0.80235 0.88952 0.80335 1.90747 1.68424 1.17747 1.68102 1.45707 1.35877 1.09733 1.44599 1.60724 1.56130 1.10139 1.04019 1.22170 0.97780 0.94768 0.90528 1.18079 0.92512 0.92580 0.89945 1.21805 0.97357 0.98365 1.01410 1.21657 0.97732 0.98533 0.99639 1.21099 1.44997 0.95115 0.93363 0.93085 1.24867 0.94933 0.95069 0.98611 1.69840 1.43425 1.15433 1.23510 0.86705 0.77696 0.81134 0.82993 1.20802 1.21358 1.20125 0.92797 0.92560 0.92427 0.91824 0.90413 0.91413 0.89781 0.90752 0.90761 0.88471 0.88687 0.76512 0.84244 0.92756 0.96837 0.96850 0.90045 0.96458 0.96426 0.90617 0.96290 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.16 37.16 0.34 -1.74 16 2 C 0.08 0.95 2.51 -67.71 -0.17 0.78 16 3 H 0.07 0.93 6.11 -51.93 -0.32 0.62 16 4 C -0.12 -1.16 4.53 -26.73 -0.12 -1.28 16 5 C 0.14 1.53 3.03 -68.37 -0.21 1.32 16 6 H 0.10 1.29 7.62 -51.93 -0.40 0.90 16 7 C -0.13 -1.09 5.30 -26.60 -0.14 -1.23 16 8 C -0.12 -1.03 6.03 -26.52 -0.16 -1.19 16 9 C -0.13 -1.31 6.04 -28.06 -0.17 -1.48 16 10 C 0.52 7.13 7.72 -11.83 -0.09 7.04 16 11 O -0.57 -10.37 17.78 5.55 0.10 -10.27 16 12 N -0.71 -8.95 5.12 -54.82 -0.28 -9.23 16 13 N -0.68 -10.49 4.83 -106.73 -0.52 -11.01 16 14 C 0.08 1.49 4.38 -3.82 -0.02 1.47 16 15 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 16 C -0.13 -2.98 7.82 37.16 0.29 -2.69 16 17 C -0.12 -2.77 8.12 37.16 0.30 -2.47 16 18 C -0.51 -13.46 8.01 -34.44 -0.28 -13.74 16 19 H 0.05 1.37 7.75 -52.48 -0.41 0.96 16 20 C 0.07 1.78 5.10 -17.82 -0.09 1.68 16 21 N -0.88 -24.15 9.38 55.43 0.52 -23.63 16 22 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 5.42 6.89 -40.82 -0.28 5.13 16 38 H 0.34 5.26 6.63 -39.29 -0.26 5.00 16 39 H 0.05 1.12 8.05 -51.93 -0.42 0.70 16 40 H 0.01 0.27 7.44 -51.93 -0.39 -0.12 16 41 H 0.01 0.26 6.84 -51.93 -0.36 -0.10 16 42 H 0.08 2.08 6.01 -51.93 -0.31 1.77 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 1.98 6.03 -51.93 -0.31 1.67 16 46 H 0.02 0.39 7.60 -51.93 -0.39 0.00 16 47 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -29.19 356.66 -8.86 -38.05 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.43 Total: 6.66 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.60 Total: -11.99 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.28 Total: -43.87 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.10 Total: -10.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.19 -8.86 -38.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.802 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds