Wall clock time and date at job start Tue Mar 31 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46834 * 2 1 4 4 C 1.53002 * 109.47063 * 119.99491 * 2 1 3 5 5 C 1.50701 * 109.47416 * 295.00353 * 4 2 1 6 6 H 1.08001 * 119.99734 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99656 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00173 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99593 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47276 * 89.99797 * 9 7 5 11 11 H 1.48497 * 109.46995 * 209.99588 * 9 7 5 12 12 H 1.48501 * 109.47269 * 329.99724 * 9 7 5 13 13 C 1.52995 * 109.46968 * 240.00246 * 2 1 3 14 14 N 1.46900 * 109.47757 * 64.99767 * 13 2 1 15 15 C 1.46893 * 111.00359 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47419 * 179.97438 * 15 14 13 17 17 H 1.09004 * 109.46785 * 55.00229 * 16 15 14 18 18 C 1.53002 * 109.47217 * 174.99939 * 16 15 14 19 19 C 1.53006 * 109.46886 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46997 * 300.00398 * 19 18 16 21 21 H 1.09001 * 109.47362 * 299.99445 * 20 19 18 22 22 C 1.50706 * 109.46573 * 180.02562 * 20 19 18 23 23 N 1.34777 * 119.99766 * 179.97438 * 22 20 19 24 24 O 1.21274 * 120.00042 * 359.72068 * 22 20 19 25 25 C 1.52997 * 109.47317 * 60.00177 * 20 19 18 26 26 C 1.52996 * 109.47131 * 299.99507 * 25 20 19 27 27 H 1.09005 * 109.46597 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47364 * 299.99504 * 1 2 3 29 29 H 1.08995 * 109.47513 * 60.00722 * 1 2 3 30 30 H 1.08995 * 109.46862 * 55.00927 * 4 2 1 31 31 H 1.09001 * 109.46406 * 175.00108 * 4 2 1 32 32 H 0.96998 * 119.99794 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46948 * 304.99258 * 13 2 1 34 34 H 1.09005 * 109.46803 * 184.99625 * 13 2 1 35 35 H 1.00898 * 110.99694 * 303.95237 * 14 13 2 36 36 H 1.09006 * 109.46762 * 60.00090 * 15 14 13 37 37 H 1.09001 * 109.47163 * 300.00507 * 15 14 13 38 38 H 1.08996 * 109.46698 * 60.00426 * 18 16 15 39 39 H 1.09001 * 109.47142 * 300.00372 * 18 16 15 40 40 H 1.09000 * 109.46866 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.46611 * 60.00303 * 19 18 16 42 42 H 0.96999 * 120.00043 * 0.02562 * 23 22 20 43 43 H 0.97000 * 120.00327 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.46952 * 59.99813 * 25 20 19 45 45 H 1.09001 * 109.46832 * 179.97438 * 25 20 19 46 46 H 1.09000 * 109.47380 * 300.00763 * 26 25 20 47 47 H 1.09000 * 109.47054 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9933 -0.4016 3.7283 8 7 2.6764 -1.5186 3.8512 9 14 1.4984 0.5628 5.2496 10 1 0.1715 0.0935 5.7234 11 1 2.5079 0.3535 6.3184 12 1 1.4224 2.0080 4.9166 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1257 -0.6265 -3.6671 16 6 1.7023 0.1908 -4.8892 17 1 2.0612 1.2147 -4.7837 18 6 2.3014 -0.4320 -6.1518 19 6 1.8784 0.3858 -7.3739 20 6 0.3522 0.3895 -7.4817 21 1 -0.0070 -0.6341 -7.5876 22 6 -0.0642 1.1945 -8.6857 23 7 -1.3713 1.3366 -8.9820 24 8 0.7765 1.7182 -9.3854 25 6 -0.2468 1.0123 -6.2191 26 6 0.1761 0.1946 -4.9971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6055 -1.7197 1.2952 31 1 3.1263 -0.7993 1.2056 32 1 2.9237 -1.8414 4.7318 33 1 1.6054 -1.7198 -1.2951 34 1 3.1263 -0.7993 -1.2056 35 1 0.6528 0.1792 -2.4753 36 1 1.6920 -1.6246 -3.7300 37 1 3.2127 -0.7037 -3.6400 38 1 1.9425 -1.4557 -6.2573 39 1 3.3887 -0.4342 -6.0751 40 1 2.3048 -0.0581 -8.2734 41 1 2.2377 1.4095 -7.2680 42 1 -2.0440 0.9211 -8.4201 43 1 -1.6395 1.8550 -9.7568 44 1 0.1125 2.0359 -6.1134 45 1 -1.3340 1.0153 -6.2962 46 1 -0.1831 -0.8291 -5.1029 47 1 -0.2510 0.6380 -4.0977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602697176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:44 Heat of formation + Delta-G solvation = -90.177286 kcal Electronic energy + Delta-G solvation = -22156.945533 eV Core-core repulsion = 18951.201038 eV Total energy + Delta-G solvation = -3205.744496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42687 -38.44586 -36.62911 -34.30942 -33.89945 -32.26359 -31.04405 -30.63341 -27.03714 -26.23163 -24.66176 -23.00473 -22.61772 -21.73727 -20.39892 -19.93557 -18.90506 -17.85924 -16.94856 -16.45571 -15.84472 -15.55838 -14.88164 -14.75919 -14.40337 -14.25363 -14.12075 -13.77961 -13.51430 -13.20550 -12.61838 -12.54489 -12.38421 -12.26161 -11.83555 -11.72477 -11.40828 -11.38578 -11.22207 -10.87504 -10.81602 -10.72397 -10.59388 -10.31886 -10.29974 -10.15811 -10.06819 -9.98847 -9.70022 -9.12963 -8.94169 -8.31988 -8.09680 -5.96575 -3.97645 2.30765 3.17503 3.33472 3.39929 3.43445 4.26735 4.34089 4.42150 4.46243 4.52735 4.83975 4.91838 5.06121 5.08704 5.17571 5.22349 5.28977 5.39193 5.54815 5.60039 5.65552 5.74298 5.80838 5.83879 5.85605 5.92876 5.99334 6.00352 6.06147 6.18165 6.26850 6.33909 6.39979 6.48525 6.57147 6.94389 6.96554 7.11314 7.18858 7.41392 7.69156 7.72121 7.87733 7.91285 8.03880 8.47752 9.08769 9.65652 11.14964 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042409 B = 0.002400 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.072711 B =11663.906615 C =12054.904189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.062 3.938 16 C -0.088 4.088 17 H 0.081 0.919 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.108 4.108 21 H 0.097 0.903 22 C 0.520 3.480 23 N -0.858 5.858 24 O -0.544 6.544 25 C -0.107 4.107 26 C -0.115 4.115 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.336 0.664 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.401 0.599 43 H 0.399 0.601 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 1.727 -24.253 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.323 5.323 15 C -0.068 4.068 16 C -0.106 4.106 17 H 0.100 0.900 18 C -0.152 4.152 19 C -0.136 4.136 20 C -0.129 4.129 21 H 0.115 0.885 22 C 0.306 3.694 23 N -0.421 5.421 24 O -0.420 6.420 25 C -0.145 4.145 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.230 0.770 43 H 0.230 0.770 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.789 2.294 -24.413 25.443 hybrid contribution -1.391 -0.392 0.838 1.670 sum -8.180 1.903 -23.574 25.026 Atomic orbital electron populations 1.21737 0.96777 1.00359 1.00194 1.21220 0.94791 1.00106 0.94212 0.91663 1.19112 0.96150 0.95343 0.90396 1.21239 1.34564 1.08249 0.90989 0.92576 1.25026 0.95349 0.95128 0.99113 1.69964 1.39085 1.21286 1.23345 0.86629 0.78170 0.80460 0.82950 1.20779 1.21311 1.19889 1.22128 1.00323 0.94366 0.89632 1.60602 1.19518 1.50676 1.01543 1.21976 1.00473 0.94790 0.89512 1.21217 0.94875 1.00879 0.93663 0.90046 1.21578 1.00856 0.99055 0.93673 1.21338 0.92310 1.01675 0.98255 1.21395 0.98763 0.99939 0.92800 0.88527 1.20817 0.82320 0.80189 0.86114 1.43937 1.07904 1.57181 1.33109 1.90742 1.51028 1.48277 1.51976 1.21511 0.99777 1.00185 0.93056 1.21605 0.96112 1.00054 0.97515 0.94078 0.91885 0.95055 0.96797 0.96662 0.93115 0.95975 0.91547 0.84435 0.95754 0.91172 0.91983 0.91313 0.91367 0.91055 0.77021 0.77037 0.91138 0.91684 0.91953 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.77 37.16 0.33 -2.12 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.11 5.14 -3.83 -0.02 1.09 16 14 N -0.69 -9.85 6.50 -113.79 -0.74 -10.59 16 15 C 0.06 0.73 5.14 -3.83 -0.02 0.71 16 16 C -0.09 -0.83 2.40 -90.62 -0.22 -1.04 16 17 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 19 C -0.10 -0.85 4.49 -26.73 -0.12 -0.97 16 20 C -0.11 -0.77 2.52 -91.77 -0.23 -1.01 16 21 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 22 C 0.52 4.53 7.43 -10.98 -0.08 4.45 16 23 N -0.86 -4.25 8.77 31.22 0.27 -3.97 16 24 O -0.54 -7.16 16.82 5.56 0.09 -7.07 16 25 C -0.11 -0.73 5.10 -26.73 -0.14 -0.86 16 26 C -0.12 -0.92 4.98 -26.73 -0.13 -1.05 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 29 H 0.03 0.47 6.68 -51.93 -0.35 0.13 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.34 4.46 5.24 -39.29 -0.21 4.26 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.40 0.91 8.25 -40.82 -0.34 0.57 16 43 H 0.40 1.68 8.93 -40.82 -0.36 1.32 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.32 7.57 -51.93 -0.39 -0.08 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.62 6.68 -51.93 -0.35 0.28 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -32.64 364.11 -9.30 -41.95 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.62 Total: 0.23 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.51 Total: -16.42 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.27 Total: -40.86 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.64 -9.30 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.231 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds