Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.46900 * 110.99509 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46639 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.46913 * 55.00520 * 16 15 14 18 18 C 1.52998 * 109.46842 * 175.00269 * 16 15 14 19 19 C 1.52999 * 109.47132 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46983 * 299.99872 * 19 18 16 21 21 H 1.09004 * 109.47305 * 299.99962 * 20 19 18 22 22 C 1.50706 * 109.47295 * 180.02562 * 20 19 18 23 23 N 1.34776 * 120.00076 * 180.02562 * 22 20 19 24 24 O 1.21283 * 119.99650 * 359.97438 * 22 20 19 25 25 C 1.52998 * 109.47082 * 60.00098 * 20 19 18 26 26 C 1.52994 * 109.47234 * 294.99966 * 16 15 14 27 27 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 28 28 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 30 30 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 31 31 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 34 34 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 35 35 H 1.00891 * 111.00258 * 303.95434 * 14 13 2 36 36 H 1.09001 * 109.47759 * 300.00110 * 15 14 13 37 37 H 1.08998 * 109.47513 * 60.00539 * 15 14 13 38 38 H 1.09010 * 109.47618 * 300.00120 * 18 16 15 39 39 H 1.08997 * 109.47308 * 60.00089 * 18 16 15 40 40 H 1.08997 * 109.47253 * 59.99686 * 19 18 16 41 41 H 1.09006 * 109.47395 * 180.02562 * 19 18 16 42 42 H 0.97005 * 119.99701 * 359.97438 * 23 22 20 43 43 H 0.96996 * 119.99925 * 179.97438 * 23 22 20 44 44 H 1.08997 * 109.47308 * 60.00091 * 25 20 19 45 45 H 1.09004 * 109.46974 * 180.02562 * 25 20 19 46 46 H 1.08997 * 109.47293 * 300.00142 * 26 16 15 47 47 H 1.08997 * 109.46877 * 60.00412 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.0789 1.9169 -5.1935 11 1 1.9779 -0.1465 -6.4630 12 1 0.0068 0.6618 -5.3040 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1257 -0.6268 3.6671 16 6 1.7023 0.1907 4.8892 17 1 0.6231 0.3429 4.8683 18 6 2.0866 -0.5623 6.1644 19 6 1.6626 0.2547 7.3865 20 6 2.3692 1.6116 7.3629 21 1 3.4484 1.4597 7.3839 22 6 1.9522 2.4162 8.5670 23 7 2.4512 3.6538 8.7563 24 8 1.1667 1.9504 9.3651 25 6 1.9849 2.3646 6.0877 26 6 2.4094 1.5472 4.8653 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 1.6054 -1.7198 -1.2952 31 1 3.1264 -0.7994 -1.2056 32 1 2.9146 -1.8469 -4.7323 33 1 1.6054 -1.7199 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 1.9882 0.9871 2.3967 36 1 1.6920 -1.6248 3.7300 37 1 3.2126 -0.7040 3.6400 38 1 1.5829 -1.5289 6.1815 39 1 3.1657 -0.7146 6.1852 40 1 0.5835 0.4067 7.3655 41 1 1.9368 -0.2815 8.2951 42 1 3.0791 4.0264 8.1177 43 1 2.1825 4.1718 9.5311 44 1 0.9058 2.5165 6.0666 45 1 2.4887 3.3311 6.0707 46 1 3.4884 1.3950 4.8862 47 1 2.1356 2.0837 3.9568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602697177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = -90.443932 kcal Electronic energy + Delta-G solvation = -22130.334318 eV Core-core repulsion = 18924.578260 eV Total energy + Delta-G solvation = -3205.756058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42258 -38.43048 -36.55371 -34.31591 -33.90886 -32.25016 -31.04772 -30.64686 -26.98773 -26.18047 -24.50395 -23.02346 -22.60742 -21.77673 -20.41014 -19.93002 -19.01323 -17.85489 -16.94376 -16.32305 -15.82804 -15.44189 -14.89398 -14.73385 -14.38750 -14.30833 -14.13633 -13.77568 -13.67223 -12.96089 -12.73404 -12.55007 -12.41151 -12.09481 -11.81279 -11.54155 -11.43516 -11.36388 -11.19195 -10.85598 -10.80798 -10.73924 -10.56713 -10.31170 -10.27567 -10.17034 -10.06701 -9.99019 -9.67879 -9.12100 -8.93847 -8.31536 -8.07569 -5.96390 -3.97557 2.30925 3.17678 3.34935 3.39295 3.41774 4.26775 4.34306 4.42304 4.46358 4.52720 4.84281 4.92073 5.06215 5.08823 5.17789 5.22496 5.29309 5.39220 5.55190 5.60085 5.64414 5.75810 5.78640 5.85126 5.88739 5.94580 6.00238 6.00591 6.16742 6.19465 6.33148 6.40107 6.45092 6.58074 6.71262 6.94569 7.04049 7.20681 7.22364 7.40860 7.67903 7.72137 7.87342 7.91422 8.03910 8.47967 9.08672 9.65650 11.15119 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038991 B = 0.002406 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.942995 B =11634.496706 C =11970.362131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.062 3.938 16 C -0.087 4.087 17 H 0.081 0.919 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.108 4.108 21 H 0.097 0.903 22 C 0.520 3.480 23 N -0.858 5.858 24 O -0.544 6.544 25 C -0.107 4.107 26 C -0.115 4.115 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.335 0.665 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.401 0.599 43 H 0.399 0.601 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 7.898 23.730 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.106 4.106 17 H 0.099 0.901 18 C -0.152 4.152 19 C -0.136 4.136 20 C -0.129 4.129 21 H 0.115 0.885 22 C 0.306 3.694 23 N -0.421 5.421 24 O -0.421 6.421 25 C -0.145 4.145 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.153 0.847 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.230 0.770 43 H 0.230 0.770 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.983 7.016 24.026 25.049 hybrid contribution 1.069 1.091 -0.983 1.816 sum 2.052 8.108 23.043 24.514 Atomic orbital electron populations 1.21583 0.95741 1.00565 1.00093 1.21193 0.95985 0.98827 0.94093 0.92948 1.19122 0.95871 0.95586 0.90468 1.21202 1.34667 1.08220 0.90993 0.92636 1.25024 0.95374 0.95103 0.99093 1.69955 1.39135 1.21181 1.23444 0.86689 0.78932 0.80053 0.82498 1.20336 1.21391 1.20263 1.22145 0.97053 0.97752 0.89555 1.60578 1.64042 1.05708 1.01580 1.21975 0.97004 0.98095 0.89654 1.21212 1.01291 0.94426 0.93648 0.90072 1.21578 1.01254 0.98722 0.93623 1.21335 1.00837 0.93163 0.98229 1.21396 1.02271 0.96418 0.92816 0.88522 1.20821 0.79890 0.81694 0.87034 1.43937 1.49919 1.18045 1.30221 1.90743 1.34461 1.70339 1.46512 1.21522 1.02173 0.97933 0.92902 1.21615 1.00189 0.95938 0.97551 0.92846 0.94191 0.93937 0.96572 0.96983 0.93057 0.91626 0.95912 0.84679 0.91242 0.95727 0.91351 0.91985 0.91075 0.91380 0.77010 0.77039 0.91152 0.91691 0.91946 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.09 5.07 -3.82 -0.02 1.07 16 14 N -0.69 -9.58 5.95 -113.77 -0.68 -10.26 16 15 C 0.06 0.72 5.14 -3.82 -0.02 0.70 16 16 C -0.09 -0.81 2.40 -90.62 -0.22 -1.02 16 17 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 18 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 19 C -0.10 -0.84 4.49 -26.73 -0.12 -0.96 16 20 C -0.11 -0.77 2.52 -91.77 -0.23 -1.01 16 21 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 22 C 0.52 4.54 7.43 -10.98 -0.08 4.45 16 23 N -0.86 -4.27 8.77 31.22 0.27 -4.00 16 24 O -0.54 -7.16 16.82 5.56 0.09 -7.07 16 25 C -0.11 -0.72 5.10 -26.71 -0.14 -0.86 16 26 C -0.12 -0.91 4.98 -26.71 -0.13 -1.04 16 27 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.33 4.37 6.98 -39.30 -0.27 4.10 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 42 H 0.40 0.93 8.25 -40.82 -0.34 0.59 16 43 H 0.40 1.69 8.93 -40.82 -0.36 1.33 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.62 6.68 -51.93 -0.35 0.27 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -32.62 366.36 -9.32 -41.94 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.74 Total: -0.19 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.50 Total: -16.32 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.33 Total: -40.58 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.62 -9.32 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.506 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds