Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99974 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00091 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47323 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.46935 * 209.99740 * 9 7 5 12 12 H 1.48493 * 109.47102 * 329.99583 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.42748 * 36.09297 * 15 14 13 17 17 C 1.54628 * 110.48369 * 158.77240 * 15 14 13 18 18 C 1.54481 * 101.76293 * 143.47799 * 17 15 14 19 19 N 1.46758 * 105.47299 * 334.58517 * 18 17 15 20 20 C 1.46504 * 124.34992 * 197.03640 * 19 18 17 21 21 C 1.52996 * 109.47398 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47165 * 300.00040 * 20 19 18 23 23 C 1.53004 * 109.47129 * 59.99844 * 20 19 18 24 24 C 1.34424 * 111.30334 * 17.01438 * 19 18 17 25 25 O 1.21282 * 124.94278 * 179.63034 * 24 19 18 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 30 30 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 31 31 H 0.97003 * 120.00629 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 34 34 H 1.00902 * 111.00582 * 303.95797 * 14 13 2 35 35 H 1.09001 * 110.97221 * 261.59609 * 17 15 14 36 36 H 1.09001 * 110.96942 * 25.36220 * 17 15 14 37 37 H 1.08997 * 110.24460 * 215.58430 * 18 17 15 38 38 H 1.08999 * 110.31754 * 93.62159 * 18 17 15 39 39 H 1.09005 * 109.47214 * 60.00137 * 21 20 19 40 40 H 1.09001 * 109.47259 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47154 * 300.00250 * 21 20 19 42 42 H 1.09006 * 109.47011 * 59.99896 * 22 20 19 43 43 H 1.08994 * 109.47469 * 179.97438 * 22 20 19 44 44 H 1.08996 * 109.47252 * 300.00050 * 22 20 19 45 45 H 1.08998 * 109.46956 * 60.00037 * 23 20 19 46 46 H 1.09001 * 109.47363 * 180.02562 * 23 20 19 47 47 H 1.08999 * 109.47135 * 300.00637 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6457 0.2777 -4.7993 9 14 2.9638 -1.9882 -3.9027 10 1 2.0248 -3.1326 -4.0200 11 1 3.8128 -1.9178 -5.1191 12 1 3.8254 -2.1753 -2.7079 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 3.0977 -1.0881 3.4969 17 6 2.1977 0.3806 4.8378 18 6 1.7596 -0.4936 6.0337 19 7 0.9331 -1.5603 5.4568 20 6 0.0188 -2.4063 6.2280 21 6 -0.6687 -3.4010 5.2907 22 6 0.8072 -3.1701 7.2937 23 6 -1.0376 -1.5306 6.9051 24 6 1.1223 -1.6612 4.1298 25 8 0.5694 -2.4641 3.4083 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1264 -0.7993 -1.2056 30 1 1.6055 -1.7198 -1.2951 31 1 1.8930 -0.0451 -5.6800 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 1.9880 0.9874 2.3967 35 1 3.2152 0.7469 4.9745 36 1 1.5044 1.2076 4.6844 37 1 1.1747 0.0973 6.7386 38 1 2.6312 -0.9190 6.5310 39 1 0.0835 -4.0250 4.8080 40 1 -1.3493 -4.0301 5.8645 41 1 -1.2305 -2.8565 4.5318 42 1 1.2967 -2.4611 7.9614 43 1 0.1270 -3.7992 7.8678 44 1 1.5597 -3.7939 6.8114 45 1 -1.5993 -0.9864 6.1459 46 1 -1.7176 -2.1599 7.4793 47 1 -0.5481 -0.8215 7.5727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602703311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = -44.322544 kcal Electronic energy + Delta-G solvation = -23231.933500 eV Core-core repulsion = 20028.177415 eV Total energy + Delta-G solvation = -3203.756085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86812 -37.29843 -36.55954 -35.63156 -33.33700 -31.82414 -29.56358 -27.85176 -27.64033 -27.33370 -26.48894 -24.61516 -22.59677 -21.87230 -20.96741 -18.96428 -18.61843 -16.97960 -16.66244 -16.54303 -15.34473 -14.89687 -14.70464 -14.39356 -14.32613 -14.07484 -13.92173 -13.60582 -13.34255 -13.01929 -12.91250 -12.57565 -12.36851 -12.23984 -12.06626 -11.87082 -11.83167 -11.62559 -11.48700 -11.40790 -11.22298 -11.18098 -10.89031 -10.66317 -10.38495 -9.70280 -9.68967 -9.44328 -9.33315 -8.97161 -8.77488 -8.45291 -8.17178 -5.96020 -3.92354 2.63344 2.83277 3.37461 3.44031 3.48555 4.13035 4.23320 4.37823 4.53094 4.59259 4.62136 4.77824 4.83388 4.97385 5.14595 5.22745 5.25684 5.33084 5.38003 5.44398 5.48685 5.56263 5.60711 5.68566 5.70856 5.72499 5.76108 5.86916 6.05239 6.13308 6.23611 6.44590 6.51778 6.60569 6.68353 6.94855 7.06815 7.12603 7.20539 7.27974 7.38870 7.52766 7.61395 7.89616 8.30387 8.64136 9.09968 9.67354 11.17486 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029371 B = 0.003418 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.091030 B = 8189.182832 C = 8421.277296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 H 0.058 0.942 4 C -0.009 4.009 5 C -0.510 4.510 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.059 3.941 14 N -0.665 5.665 15 C 0.052 3.948 16 H 0.077 0.923 17 C -0.134 4.134 18 C 0.107 3.893 19 N -0.616 5.616 20 C 0.174 3.826 21 C -0.142 4.142 22 C -0.156 4.156 23 C -0.157 4.157 24 C 0.531 3.469 25 O -0.508 6.508 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.261 0.739 32 H 0.023 0.977 33 H 0.079 0.921 34 H 0.344 0.656 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -2.433 28.641 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.298 5.298 15 C -0.062 4.062 16 H 0.094 0.906 17 C -0.172 4.172 18 C -0.016 4.016 19 N -0.353 5.353 20 C 0.091 3.909 21 C -0.199 4.199 22 C -0.214 4.214 23 C -0.215 4.215 24 C 0.317 3.683 25 O -0.382 6.382 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.621 -3.205 28.115 28.304 hybrid contribution 1.564 -0.580 -0.193 1.679 sum 0.943 -3.785 27.922 28.193 Atomic orbital electron populations 1.21575 0.95214 1.00832 1.00359 1.20983 0.96428 0.98752 0.92852 0.92353 1.19609 0.95631 0.96019 0.93445 1.21143 1.35069 1.09522 0.89101 0.90826 1.25023 0.95720 0.96912 0.95956 1.69916 1.47386 1.39359 0.97965 0.86806 0.80670 0.84477 0.77490 1.20324 1.21554 1.19139 1.22336 0.96846 0.98746 0.88996 1.60306 1.63778 1.05408 1.00322 1.22194 0.96642 0.95270 0.92053 0.90567 1.22808 1.03235 0.98022 0.93146 1.21927 0.94624 0.88670 0.96399 1.48355 1.43026 1.35765 1.08118 1.20419 0.88714 0.90166 0.91597 1.22101 1.00821 0.98384 0.98590 1.22186 1.00634 1.00291 0.98325 1.22180 0.98516 1.00031 1.00766 1.20728 0.82097 0.84086 0.81410 1.90714 1.50390 1.38818 1.58252 0.93911 0.92403 0.94055 0.97006 0.96950 0.92890 0.95871 0.90215 0.83612 0.89327 0.88929 0.90512 0.91438 0.91281 0.92656 0.90959 0.92403 0.91405 0.92221 0.91918 0.91432 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.89 37.16 0.33 -2.21 16 2 C -0.07 -1.47 2.48 -90.62 -0.22 -1.70 16 3 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 4 C -0.01 -0.23 3.52 -27.89 -0.10 -0.33 16 5 C -0.51 -14.84 8.96 -34.44 -0.31 -15.15 16 6 H 0.07 2.29 7.30 -52.49 -0.38 1.90 16 7 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 9 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 13 C 0.06 1.04 4.88 -3.83 -0.02 1.02 16 14 N -0.67 -9.49 5.75 -106.74 -0.61 -10.11 16 15 C 0.05 0.62 3.24 -67.72 -0.22 0.40 16 16 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 17 C -0.13 -1.02 6.62 -25.10 -0.17 -1.19 16 18 C 0.11 0.77 6.60 -3.12 -0.02 0.74 16 19 N -0.62 -6.41 2.76 -157.58 -0.43 -6.85 16 20 C 0.17 1.63 1.20 -131.82 -0.16 1.47 16 21 C -0.14 -1.61 7.00 37.16 0.26 -1.35 16 22 C -0.16 -1.13 8.54 37.16 0.32 -0.82 16 23 C -0.16 -1.20 8.49 37.16 0.32 -0.89 16 24 C 0.53 7.41 7.46 -10.86 -0.08 7.33 16 25 O -0.51 -9.10 12.92 5.56 0.07 -9.03 16 26 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 27 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 28 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 30 H 0.01 0.31 7.57 -51.92 -0.39 -0.08 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.08 1.58 7.12 -51.93 -0.37 1.21 16 34 H 0.34 4.29 8.46 -39.29 -0.33 3.95 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.08 0.44 7.12 -51.93 -0.37 0.07 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.92 7.06 -51.93 -0.37 0.55 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.01 7.08 -51.93 -0.37 0.64 16 42 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.37 7.21 -51.93 -0.37 -0.01 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -33.68 361.30 -8.32 -42.00 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.72 Total: -0.66 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.17 Total: -10.83 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.28 Total: -44.79 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.68 -8.32 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.319 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds