Wall clock time and date at job start Tue Mar 31 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 C 1.52997 * 109.47438 * 120.00426 * 2 1 3 5 5 C 1.50697 * 109.46961 * 295.00093 * 4 2 1 6 6 H 1.07995 * 120.00187 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99895 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00383 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00200 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47164 * 59.99890 * 9 7 5 11 11 H 1.48492 * 109.47489 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47049 * 300.00118 * 9 7 5 13 13 C 1.53000 * 109.46792 * 240.00293 * 2 1 3 14 14 N 1.46900 * 109.47205 * 65.00223 * 13 2 1 15 15 C 1.46902 * 111.00159 * 180.02562 * 14 13 2 16 16 H 1.09002 * 110.43197 * 327.53764 * 15 14 13 17 17 C 1.54633 * 110.48548 * 204.99925 * 15 14 13 18 18 C 1.54480 * 101.76342 * 216.38823 * 17 15 14 19 19 N 1.46768 * 105.55098 * 25.37218 * 18 17 15 20 20 C 1.46494 * 124.35072 * 163.02465 * 19 18 17 21 21 C 1.53005 * 109.46791 * 60.00085 * 20 19 18 22 22 C 1.53001 * 109.46956 * 179.97438 * 20 19 18 23 23 C 1.52999 * 109.47270 * 299.99905 * 20 19 18 24 24 C 1.34570 * 111.21385 * 343.09005 * 19 18 17 25 25 O 1.21276 * 124.91592 * 180.34319 * 24 19 18 26 26 H 1.09000 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46740 * 299.99564 * 1 2 3 28 28 H 1.08995 * 109.47641 * 59.99776 * 1 2 3 29 29 H 1.09005 * 109.47196 * 54.99627 * 4 2 1 30 30 H 1.08993 * 109.47208 * 175.00013 * 4 2 1 31 31 H 0.96999 * 120.00289 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47391 * 305.00190 * 13 2 1 33 33 H 1.08997 * 109.47385 * 184.99718 * 13 2 1 34 34 H 1.00901 * 111.00389 * 56.04115 * 14 13 2 35 35 H 1.08994 * 110.97090 * 98.26847 * 17 15 14 36 36 H 1.08997 * 110.96878 * 334.50497 * 17 15 14 37 37 H 1.09002 * 110.24648 * 144.41594 * 18 17 15 38 38 H 1.09002 * 110.24453 * 266.32950 * 18 17 15 39 39 H 1.08993 * 109.47194 * 59.99999 * 21 20 19 40 40 H 1.09005 * 109.46470 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47363 * 299.99323 * 21 20 19 42 42 H 1.09002 * 109.46766 * 60.00498 * 22 20 19 43 43 H 1.09005 * 109.47107 * 179.97438 * 22 20 19 44 44 H 1.08993 * 109.47690 * 300.00406 * 22 20 19 45 45 H 1.09002 * 109.46764 * 59.99900 * 23 20 19 46 46 H 1.09002 * 109.46811 * 179.97438 * 23 20 19 47 47 H 1.08991 * 109.46780 * 300.00117 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9925 -0.4025 3.7282 8 7 2.6748 -1.5200 3.8511 9 14 1.4989 0.5625 5.2496 10 1 0.0190 0.6701 5.3090 11 1 1.9928 -0.1383 6.4621 12 1 2.0921 1.9225 5.1872 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0376 -2.4456 15 6 2.1246 -0.6270 -3.6673 16 1 3.0666 -1.1423 -3.4796 17 6 2.2878 0.3989 -4.8128 18 6 1.8424 -0.4264 -6.0404 19 7 0.9433 -1.4603 -5.5143 20 6 0.0126 -2.2410 -6.3331 21 6 0.7954 -3.0226 -7.3901 22 6 -0.7548 -3.2187 -5.4409 23 6 -0.9743 -1.2974 -7.0235 24 6 1.0842 -1.5966 -4.1830 25 8 0.4673 -2.3834 -3.4966 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6054 -1.7199 1.2950 30 1 3.1263 -0.7995 1.2054 31 1 2.9221 -1.8430 4.7316 32 1 1.6053 -1.7197 -1.2953 33 1 3.1262 -0.7994 -1.2058 34 1 1.9880 0.9875 -2.3967 35 1 3.3269 0.7129 -4.9101 36 1 1.6345 1.2584 -4.6627 37 1 1.3122 0.2090 -6.7499 38 1 2.7067 -0.8863 -6.5195 39 1 1.4985 -3.6948 -6.8982 40 1 0.1028 -3.6032 -7.9996 41 1 1.3425 -2.3264 -8.0258 42 1 -1.3125 -2.6621 -4.6876 43 1 -1.4477 -3.7993 -6.0500 44 1 -0.0516 -3.8908 -4.9493 45 1 -0.4272 -0.6012 -7.6591 46 1 -1.6665 -1.8783 -7.6330 47 1 -1.5318 -0.7406 -6.2704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602703312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:18 Heat of formation + Delta-G solvation = -47.908765 kcal Electronic energy + Delta-G solvation = -23141.825271 eV Core-core repulsion = 19937.913676 eV Total energy + Delta-G solvation = -3203.911595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79501 -37.21563 -36.50512 -35.53142 -33.30701 -31.74600 -29.45586 -27.70279 -27.60538 -26.94733 -26.33405 -24.59561 -22.63440 -22.11946 -20.91860 -18.92808 -18.56575 -16.88865 -16.50172 -16.22256 -15.29552 -14.81387 -14.63535 -14.36842 -14.26998 -14.13427 -14.02144 -13.56251 -13.26882 -12.87268 -12.70978 -12.51815 -12.25465 -12.20274 -12.01542 -11.83032 -11.70729 -11.49425 -11.34455 -11.29347 -11.18576 -11.09952 -10.78736 -10.69860 -10.22091 -10.19104 -9.61472 -9.40924 -9.06580 -8.88507 -8.72128 -8.26366 -8.08659 -5.91194 -3.92216 2.69414 2.88266 3.38568 3.42690 3.45344 4.17618 4.30025 4.42658 4.54048 4.63596 4.66183 4.81656 4.88242 5.03436 5.18562 5.26649 5.31207 5.36880 5.44294 5.47489 5.53043 5.60571 5.64316 5.73047 5.76345 5.78995 5.82059 5.98383 6.09007 6.25439 6.28098 6.55695 6.62595 6.66909 6.78232 7.08874 7.13329 7.25557 7.29399 7.37987 7.64159 7.76801 7.94350 8.09759 8.36676 8.53435 9.14061 9.70614 11.20395 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034176 B = 0.003146 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.100277 B = 8898.768801 C = 9124.857771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.666 5.666 15 C 0.053 3.947 16 H 0.079 0.921 17 C -0.136 4.136 18 C 0.108 3.892 19 N -0.617 5.617 20 C 0.175 3.825 21 C -0.156 4.156 22 C -0.142 4.142 23 C -0.157 4.157 24 C 0.530 3.470 25 O -0.507 6.507 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.017 0.983 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.343 0.657 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 1.826 -26.207 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.065 4.065 14 N -0.299 5.299 15 C -0.061 4.061 16 H 0.096 0.904 17 C -0.174 4.174 18 C -0.016 4.016 19 N -0.354 5.354 20 C 0.091 3.909 21 C -0.214 4.214 22 C -0.199 4.199 23 C -0.215 4.215 24 C 0.317 3.683 25 O -0.380 6.380 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.633 0.943 -25.758 25.909 hybrid contribution 0.854 0.703 0.847 1.394 sum -1.778 1.646 -24.911 25.028 Atomic orbital electron populations 1.21561 0.95651 1.00775 0.99806 1.21181 0.96090 0.98650 0.93987 0.92976 1.19108 0.95819 0.95686 0.90356 1.21206 1.34560 1.08233 0.91019 0.92634 1.25021 0.95400 0.95102 0.99053 1.69962 1.39153 1.21195 1.23409 0.86693 0.78916 0.80047 0.82534 1.20275 1.21406 1.20355 1.22299 0.96903 0.98543 0.88791 1.60314 1.63810 1.05355 1.00411 1.22190 0.96369 0.95558 0.91990 0.90362 1.22835 1.03031 0.98220 0.93280 1.21914 0.93355 0.89613 0.96707 1.48393 1.40136 1.39040 1.07873 1.20409 0.88557 0.90988 0.90906 1.22189 1.00634 1.00223 0.98390 1.22098 1.00198 0.98731 0.98871 1.22177 0.98976 0.99635 1.00681 1.20797 0.82888 0.83280 0.81370 1.90714 1.48250 1.38160 1.60857 0.93994 0.92945 0.94161 0.96462 0.96990 0.93085 0.90443 0.95779 0.83775 0.89333 0.89054 0.90597 0.91467 0.92186 0.91440 0.92429 0.90986 0.92677 0.91245 0.92442 0.91462 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.89 37.16 0.33 -2.21 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.94 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 5 C -0.51 -14.76 8.41 -34.44 -0.29 -15.05 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 9 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.06 1.17 4.90 -3.82 -0.02 1.15 16 14 N -0.67 -9.95 5.78 -106.73 -0.62 -10.57 16 15 C 0.05 0.66 3.26 -67.72 -0.22 0.44 16 16 H 0.08 0.98 7.82 -51.93 -0.41 0.58 16 17 C -0.14 -1.09 6.59 -25.10 -0.17 -1.26 16 18 C 0.11 0.81 6.59 -3.12 -0.02 0.79 16 19 N -0.62 -6.69 2.76 -157.53 -0.44 -7.13 16 20 C 0.17 1.69 1.20 -131.82 -0.16 1.53 16 21 C -0.16 -1.19 8.54 37.16 0.32 -0.87 16 22 C -0.14 -1.66 7.00 37.16 0.26 -1.40 16 23 C -0.16 -1.24 8.49 37.16 0.32 -0.93 16 24 C 0.53 7.72 7.48 -10.79 -0.08 7.64 16 25 O -0.51 -9.42 13.33 5.56 0.07 -9.34 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 28 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.08 1.62 7.49 -51.93 -0.39 1.23 16 33 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.34 4.47 8.38 -39.29 -0.33 4.14 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.73 8.04 -51.93 -0.42 0.32 16 37 H 0.08 0.46 7.12 -51.93 -0.37 0.09 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 42 H 0.07 1.03 7.08 -51.93 -0.37 0.66 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.95 7.07 -51.93 -0.37 0.59 16 45 H 0.06 0.38 7.21 -51.93 -0.37 0.01 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -33.31 365.57 -8.70 -42.01 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.77 Total: -0.70 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.18 Total: -9.98 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.32 Total: -44.66 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.31 -8.70 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.901 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds