Wall clock time and date at job start Tue Mar 31 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46807 * 2 1 4 4 C 1.52996 * 109.47235 * 120.00079 * 2 1 3 5 5 C 1.50696 * 109.47183 * 295.00095 * 4 2 1 6 6 H 1.08005 * 120.00196 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99618 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00446 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.47072 * 90.00316 * 9 7 5 11 11 H 1.48501 * 109.47589 * 209.99673 * 9 7 5 12 12 H 1.48498 * 109.47131 * 330.00229 * 9 7 5 13 13 C 1.53005 * 109.46993 * 240.00343 * 2 1 3 14 14 N 1.46895 * 109.47050 * 64.99724 * 13 2 1 15 15 C 1.46906 * 110.99811 * 179.97438 * 14 13 2 16 16 H 1.09001 * 110.42962 * 36.09203 * 15 14 13 17 17 C 1.54627 * 110.48726 * 158.77137 * 15 14 13 18 18 C 1.54473 * 101.76646 * 143.47726 * 17 15 14 19 19 N 1.46769 * 105.47411 * 334.58750 * 18 17 15 20 20 C 1.46497 * 124.34938 * 197.04108 * 19 18 17 21 21 C 1.52996 * 109.47081 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.46946 * 299.99469 * 20 19 18 23 23 C 1.53000 * 109.47221 * 59.99642 * 20 19 18 24 24 C 1.34416 * 111.29736 * 17.01164 * 19 18 17 25 25 O 1.21284 * 124.93912 * 179.56061 * 24 19 18 26 26 H 1.08995 * 109.46966 * 59.99816 * 1 2 3 27 27 H 1.08996 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46732 * 299.99704 * 1 2 3 29 29 H 1.09003 * 109.46968 * 54.99648 * 4 2 1 30 30 H 1.08998 * 109.47359 * 175.00011 * 4 2 1 31 31 H 0.96997 * 120.00256 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46895 * 305.00031 * 13 2 1 33 33 H 1.09000 * 109.47060 * 185.00102 * 13 2 1 34 34 H 1.00901 * 111.00538 * 56.04962 * 14 13 2 35 35 H 1.09006 * 110.96963 * 261.60097 * 17 15 14 36 36 H 1.09006 * 110.97040 * 25.35460 * 17 15 14 37 37 H 1.09001 * 110.24628 * 215.58490 * 18 17 15 38 38 H 1.09000 * 110.31981 * 93.62085 * 18 17 15 39 39 H 1.09004 * 109.47388 * 59.99603 * 21 20 19 40 40 H 1.09001 * 109.47309 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46972 * 299.99764 * 21 20 19 42 42 H 1.08998 * 109.47014 * 59.99916 * 22 20 19 43 43 H 1.09001 * 109.47056 * 180.02562 * 22 20 19 44 44 H 1.09004 * 109.46971 * 300.00059 * 22 20 19 45 45 H 1.08993 * 109.47379 * 60.00027 * 23 20 19 46 46 H 1.09006 * 109.46724 * 180.02562 * 23 20 19 47 47 H 1.08995 * 109.47072 * 299.99451 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0807 0.9746 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6756 -1.5193 3.8511 9 14 1.4989 0.5628 5.2496 10 1 0.1712 0.0954 5.7231 11 1 2.5079 0.3519 6.3186 12 1 1.4251 2.0080 4.9166 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1258 -0.6264 -3.6672 16 1 2.0709 -1.7095 -3.5575 17 6 1.3025 -0.1612 -4.8906 18 6 2.3794 -0.1185 -5.9972 19 7 3.6528 0.0856 -5.2967 20 6 4.8873 0.5401 -5.9414 21 6 6.0021 0.6360 -4.8979 22 6 5.2911 -0.4565 -7.0297 23 6 4.6578 1.9162 -6.5696 24 6 3.5407 -0.1977 -3.9875 25 8 4.4429 -0.1213 -3.1805 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 3.1264 -0.7995 1.2056 31 1 2.9229 -1.8423 4.7316 32 1 1.6054 -1.7198 -1.2953 33 1 3.1264 -0.7994 -1.2057 34 1 1.9881 0.9874 -2.3967 35 1 0.5223 -0.8828 -5.1331 36 1 0.8775 0.8283 -4.7214 37 1 2.1870 0.7099 -6.6790 38 1 2.3970 -1.0608 -6.5449 39 1 6.1658 -0.3442 -4.4499 40 1 6.9208 0.9738 -5.3776 41 1 5.7142 1.3463 -4.1228 42 1 4.4968 -0.5245 -7.7730 43 1 6.2099 -0.1185 -7.5091 44 1 5.4547 -1.4368 -6.5821 45 1 4.3701 2.6262 -5.7943 46 1 5.5762 2.2542 -7.0497 47 1 3.8635 1.8483 -7.3130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602703313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:20 Heat of formation + Delta-G solvation = -49.690879 kcal Electronic energy + Delta-G solvation = -23134.124164 eV Core-core repulsion = 19930.135291 eV Total energy + Delta-G solvation = -3203.988873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94490 -37.28705 -36.53603 -35.55420 -33.28363 -31.73320 -29.51446 -27.75367 -27.65171 -26.98015 -26.34090 -24.55535 -22.45175 -22.19689 -21.01599 -19.05305 -18.69224 -16.96467 -16.48371 -16.18845 -15.56788 -14.85508 -14.64862 -14.38453 -14.19883 -14.08439 -13.92964 -13.39360 -13.32970 -13.04289 -12.72326 -12.49818 -12.30039 -12.17283 -12.04173 -11.88325 -11.68127 -11.52939 -11.41774 -11.32985 -11.24405 -11.04651 -10.79285 -10.73162 -10.22973 -10.18649 -9.78469 -9.59271 -9.07062 -8.87908 -8.80695 -8.25841 -8.02590 -5.90525 -3.91399 2.56475 2.79242 3.37620 3.43586 3.47236 4.14213 4.32106 4.46031 4.54888 4.61428 4.66583 4.76055 4.90502 4.98645 5.17669 5.22950 5.31283 5.34931 5.43182 5.45110 5.52567 5.59428 5.70936 5.73172 5.74468 5.78934 5.85618 6.03312 6.05585 6.21067 6.27699 6.45902 6.56544 6.64931 6.73897 7.02737 7.05815 7.22350 7.24651 7.35133 7.56127 7.78710 7.94801 8.10342 8.19282 8.54158 9.15031 9.71400 11.21122 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.003278 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.683797 B = 8539.626520 C = 9017.257907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.058 3.942 14 N -0.657 5.657 15 C 0.055 3.945 16 H 0.111 0.889 17 C -0.119 4.119 18 C 0.101 3.899 19 N -0.612 5.612 20 C 0.171 3.829 21 C -0.141 4.141 22 C -0.156 4.156 23 C -0.157 4.157 24 C 0.485 3.515 25 O -0.516 6.516 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.340 0.660 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 3.256 -25.984 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.071 4.071 14 N -0.287 5.287 15 C -0.059 4.059 16 H 0.129 0.871 17 C -0.158 4.158 18 C -0.022 4.022 19 N -0.349 5.349 20 C 0.088 3.912 21 C -0.199 4.199 22 C -0.214 4.214 23 C -0.215 4.215 24 C 0.271 3.729 25 O -0.391 6.391 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.158 0.842 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.819 2.921 -25.460 25.640 hybrid contribution 0.748 0.588 0.822 1.257 sum 1.567 3.510 -24.639 24.937 Atomic orbital electron populations 1.21599 0.95822 1.00512 1.00054 1.21186 0.95778 0.98979 0.94089 0.92897 1.19108 0.96075 0.95469 0.90325 1.21243 1.34465 1.08218 0.91010 0.92609 1.25024 0.95388 0.95132 0.99070 1.69972 1.39120 1.21313 1.23278 0.86633 0.78153 0.80443 0.82994 1.20758 1.21355 1.19935 1.22291 0.98775 0.97156 0.88843 1.60886 1.61235 1.05872 1.00721 1.22425 0.89705 1.01174 0.92584 0.87147 1.22633 0.96909 1.03849 0.92364 1.22064 0.82816 1.01596 0.95738 1.48494 1.10406 1.66949 1.09017 1.20456 0.83927 0.93537 0.93311 1.22094 0.95819 1.04182 0.97762 1.22176 1.01624 0.99464 0.98115 1.22177 1.02196 0.96138 1.00955 1.22163 0.91879 0.76898 0.81961 1.90770 1.44344 1.52545 1.51417 0.94045 0.94159 0.92814 0.96602 0.96788 0.93153 0.91620 0.93965 0.84170 0.89024 0.89367 0.90614 0.91329 0.91223 0.92610 0.91196 0.92339 0.91420 0.92179 0.92079 0.91407 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.74 2.48 -90.61 -0.22 -1.97 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 5 C -0.51 -14.79 8.41 -34.44 -0.29 -15.08 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.06 1.06 4.88 -3.82 -0.02 1.05 16 14 N -0.66 -9.74 5.75 -106.73 -0.61 -10.36 16 15 C 0.06 0.68 3.24 -67.72 -0.22 0.46 16 16 H 0.11 1.35 7.87 -51.93 -0.41 0.94 16 17 C -0.12 -0.99 6.88 -25.10 -0.17 -1.16 16 18 C 0.10 0.74 6.60 -3.12 -0.02 0.72 16 19 N -0.61 -6.37 2.76 -157.58 -0.43 -6.80 16 20 C 0.17 1.61 1.20 -131.82 -0.16 1.46 16 21 C -0.14 -1.63 7.00 37.16 0.26 -1.37 16 22 C -0.16 -1.17 8.54 37.16 0.32 -0.85 16 23 C -0.16 -1.20 8.49 37.16 0.32 -0.88 16 24 C 0.49 6.70 7.21 -10.86 -0.08 6.62 16 25 O -0.52 -9.22 12.92 5.55 0.07 -9.15 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.31 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 33 H 0.04 0.87 7.12 -51.93 -0.37 0.50 16 34 H 0.34 5.16 8.49 -39.29 -0.33 4.83 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.08 0.44 7.12 -51.93 -0.37 0.07 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.96 7.06 -51.93 -0.37 0.59 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 42 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.37 7.21 -51.93 -0.37 0.00 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -32.73 364.94 -8.70 -41.43 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -8.76 Total: 0.17 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.18 Total: -10.98 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.31 Total: -44.22 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.07 Total: -9.15 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.73 -8.70 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.264 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds