Wall clock time and date at job start Tue Mar 31 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46807 * 2 1 4 4 C 1.52996 * 109.47235 * 120.00079 * 2 1 3 5 5 C 1.50696 * 109.47183 * 295.00095 * 4 2 1 6 6 H 1.08005 * 120.00196 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99618 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00446 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.47072 * 90.00316 * 9 7 5 11 11 H 1.48501 * 109.47589 * 209.99673 * 9 7 5 12 12 H 1.48498 * 109.47131 * 330.00229 * 9 7 5 13 13 C 1.53005 * 109.46993 * 240.00343 * 2 1 3 14 14 N 1.46895 * 109.47050 * 64.99724 * 13 2 1 15 15 C 1.46906 * 110.99811 * 179.97438 * 14 13 2 16 16 H 1.09001 * 110.42962 * 36.09203 * 15 14 13 17 17 C 1.54627 * 110.48726 * 158.77137 * 15 14 13 18 18 C 1.54473 * 101.76646 * 143.47726 * 17 15 14 19 19 N 1.46769 * 105.47411 * 334.58750 * 18 17 15 20 20 C 1.46497 * 124.34938 * 197.04108 * 19 18 17 21 21 C 1.52996 * 109.47081 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.46946 * 299.99469 * 20 19 18 23 23 C 1.53000 * 109.47221 * 59.99642 * 20 19 18 24 24 C 1.34416 * 111.29736 * 17.01164 * 19 18 17 25 25 O 1.21284 * 124.93912 * 179.56061 * 24 19 18 26 26 H 1.08995 * 109.46966 * 59.99816 * 1 2 3 27 27 H 1.08996 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46732 * 299.99704 * 1 2 3 29 29 H 1.09003 * 109.46968 * 54.99648 * 4 2 1 30 30 H 1.08998 * 109.47359 * 175.00011 * 4 2 1 31 31 H 0.96997 * 120.00256 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46895 * 305.00031 * 13 2 1 33 33 H 1.09000 * 109.47060 * 185.00102 * 13 2 1 34 34 H 1.00901 * 111.00538 * 56.04962 * 14 13 2 35 35 H 1.09006 * 110.96963 * 261.60097 * 17 15 14 36 36 H 1.09006 * 110.97040 * 25.35460 * 17 15 14 37 37 H 1.09001 * 110.24628 * 215.58490 * 18 17 15 38 38 H 1.09000 * 110.31981 * 93.62085 * 18 17 15 39 39 H 1.09004 * 109.47388 * 59.99603 * 21 20 19 40 40 H 1.09001 * 109.47309 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46972 * 299.99764 * 21 20 19 42 42 H 1.08998 * 109.47014 * 59.99916 * 22 20 19 43 43 H 1.09001 * 109.47056 * 180.02562 * 22 20 19 44 44 H 1.09004 * 109.46971 * 300.00059 * 22 20 19 45 45 H 1.08993 * 109.47379 * 60.00027 * 23 20 19 46 46 H 1.09006 * 109.46724 * 180.02562 * 23 20 19 47 47 H 1.08995 * 109.47072 * 299.99451 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0807 0.9746 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6756 -1.5193 3.8511 9 14 1.4989 0.5628 5.2496 10 1 0.1712 0.0954 5.7231 11 1 2.5079 0.3519 6.3186 12 1 1.4251 2.0080 4.9166 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1258 -0.6264 -3.6672 16 1 2.0709 -1.7095 -3.5575 17 6 1.3025 -0.1612 -4.8906 18 6 2.3794 -0.1185 -5.9972 19 7 3.6528 0.0856 -5.2967 20 6 4.8873 0.5401 -5.9414 21 6 6.0021 0.6360 -4.8979 22 6 5.2911 -0.4565 -7.0297 23 6 4.6578 1.9162 -6.5696 24 6 3.5407 -0.1977 -3.9875 25 8 4.4429 -0.1213 -3.1805 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 3.1264 -0.7995 1.2056 31 1 2.9229 -1.8423 4.7316 32 1 1.6054 -1.7198 -1.2953 33 1 3.1264 -0.7994 -1.2057 34 1 1.9881 0.9874 -2.3967 35 1 0.5223 -0.8828 -5.1331 36 1 0.8775 0.8283 -4.7214 37 1 2.1870 0.7099 -6.6790 38 1 2.3970 -1.0608 -6.5449 39 1 6.1658 -0.3442 -4.4499 40 1 6.9208 0.9738 -5.3776 41 1 5.7142 1.3463 -4.1228 42 1 4.4968 -0.5245 -7.7730 43 1 6.2099 -0.1185 -7.5091 44 1 5.4547 -1.4368 -6.5821 45 1 4.3701 2.6262 -5.7943 46 1 5.5762 2.2542 -7.0497 47 1 3.8635 1.8483 -7.3130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602703313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:20 Heat of formation + Delta-G solvation = -71.140112 kcal Electronic energy + Delta-G solvation = -23135.054273 eV Core-core repulsion = 19930.135291 eV Total energy + Delta-G solvation = -3204.918982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87938 -38.47476 -37.71253 -36.79962 -34.98656 -33.49778 -30.45600 -29.00206 -28.48631 -28.24062 -27.57944 -26.15383 -24.20857 -23.07946 -21.98576 -20.73216 -19.65540 -18.53527 -17.86396 -17.33935 -16.65552 -16.46639 -15.89769 -15.69918 -15.50468 -15.07223 -14.86973 -14.66646 -14.45494 -14.19736 -14.01399 -13.83460 -13.40014 -13.20765 -13.13050 -13.01577 -12.78095 -12.75922 -12.67498 -12.63101 -12.56192 -12.25217 -12.20684 -12.00699 -11.96240 -11.77086 -11.54192 -11.13377 -10.91859 -10.85337 -10.54878 -9.64630 -9.28490 -8.18203 -6.28232 1.38675 1.40937 1.51320 1.52028 1.98856 2.41356 3.07790 3.14751 3.44011 3.65637 3.89512 3.90740 4.02723 4.05935 4.16806 4.23039 4.35849 4.47644 4.56612 4.60593 4.64039 4.68132 4.77947 4.82386 4.86304 4.90823 4.92609 4.93682 5.01807 5.14504 5.15702 5.18641 5.26148 5.28242 5.36364 5.45263 5.51402 5.54434 5.75397 5.79395 5.86758 5.91596 6.14400 6.25929 6.28668 6.87615 7.19620 7.40025 8.94323 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.003278 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.683797 B = 8539.626520 C = 9017.257907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 H 0.046 0.954 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.075 3.925 14 N -0.645 5.645 15 C 0.049 3.951 16 H 0.109 0.891 17 C -0.105 4.105 18 C 0.099 3.901 19 N -0.605 5.605 20 C 0.163 3.837 21 C -0.136 4.136 22 C -0.149 4.149 23 C -0.150 4.150 24 C 0.473 3.527 25 O -0.572 6.572 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.038 0.962 29 H -0.008 1.008 30 H -0.024 1.024 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.010 0.990 34 H 0.339 0.661 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 4.506 -28.665 29.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.054 4.054 14 N -0.274 5.274 15 C -0.064 4.064 16 H 0.127 0.873 17 C -0.143 4.143 18 C -0.023 4.023 19 N -0.340 5.340 20 C 0.080 3.920 21 C -0.193 4.193 22 C -0.207 4.207 23 C -0.208 4.208 24 C 0.259 3.741 25 O -0.451 6.451 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.010 0.990 30 H -0.006 1.006 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.085 4.182 -28.214 28.543 hybrid contribution 1.401 0.168 1.582 2.120 sum 0.316 4.350 -26.632 26.987 Atomic orbital electron populations 1.21474 0.93784 1.00687 1.00783 1.20996 0.97276 0.97949 0.92998 0.93591 1.18993 0.93575 0.94869 0.92983 1.21634 1.34511 1.08591 0.91984 0.91922 1.26025 0.95185 0.96171 1.02864 1.70123 1.40268 1.23129 1.24306 0.85440 0.78099 0.79195 0.78282 1.19481 1.20968 1.18728 1.21912 0.96584 0.97359 0.89570 1.60871 1.60808 1.05469 1.00256 1.22620 0.89907 1.01038 0.92875 0.87298 1.22647 0.97117 1.04546 0.90002 1.22368 0.80511 1.03906 0.95501 1.48632 1.12001 1.65195 1.08134 1.20654 0.82739 0.95587 0.92985 1.21997 0.98004 1.01524 0.97816 1.22124 1.03159 0.97823 0.97565 1.22126 1.03795 0.94062 1.00780 1.22461 0.91940 0.76821 0.82873 1.90752 1.46021 1.55131 1.53201 0.90936 0.94228 0.94287 0.98960 1.00596 0.92928 0.91399 0.97144 0.84359 0.86555 0.89025 0.87873 0.89116 0.94256 0.90531 0.94313 0.90129 0.89899 0.93790 0.93771 0.89896 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.28 8.89 71.98 0.64 -3.64 16 2 C -0.07 -3.24 2.48 -10.79 -0.03 -3.27 16 3 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 4 C 0.03 1.89 4.45 29.85 0.13 2.02 16 5 C -0.53 -31.44 8.41 25.60 0.22 -31.22 16 6 H 0.06 3.56 7.06 -2.91 -0.02 3.54 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -59.89 13.29 21.45 0.28 -59.61 16 9 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.07 2.89 4.88 86.31 0.42 3.31 16 14 N -0.65 -18.96 5.75 -491.60 -2.83 -21.79 16 15 C 0.05 1.17 3.24 44.91 0.15 1.32 16 16 H 0.11 2.61 7.87 -2.39 -0.02 2.60 16 17 C -0.11 -1.39 6.88 31.65 0.22 -1.18 16 18 C 0.10 1.07 6.60 86.83 0.57 1.65 16 19 N -0.61 -11.74 2.76 -771.05 -2.13 -13.87 16 20 C 0.16 2.85 1.20 3.60 0.00 2.85 16 21 C -0.14 -3.29 7.00 71.98 0.50 -2.78 16 22 C -0.15 -1.85 8.54 71.98 0.61 -1.24 16 23 C -0.15 -1.88 8.49 71.98 0.61 -1.27 16 24 C 0.47 13.34 7.21 87.90 0.63 13.98 16 25 O -0.57 -22.10 12.92 -3.04 -0.04 -22.14 16 26 H 0.07 2.37 7.75 -2.39 -0.02 2.35 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.61 6.95 -2.39 -0.02 1.60 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.07 2.56 8.08 -2.39 -0.02 2.54 16 33 H 0.01 0.46 7.12 -2.39 -0.02 0.44 16 34 H 0.34 10.30 8.49 -89.69 -0.76 9.54 16 35 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 1.22 8.09 -2.38 -0.02 1.20 16 37 H 0.10 0.66 7.12 -2.39 -0.02 0.64 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.04 1.17 7.06 -2.39 -0.02 1.15 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.16 7.08 -2.39 -0.02 1.14 16 42 H 0.08 0.67 7.90 -2.39 -0.02 0.65 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.08 0.67 7.21 -2.39 -0.02 0.66 16 Total: -1.00 -76.21 364.94 2.62 -73.59 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.16 Total: 15.03 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 5.15 Total: -19.36 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.67 Total: -95.26 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.04 Total: -22.14 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -76.21 2.62 -73.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.450 kcal (2) G-P(sol) polarization free energy of solvation -76.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds