Wall clock time and date at job start Tue Mar 31 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.46900 * 110.99509 * 180.02562 * 14 13 2 16 16 H 1.08998 * 110.43925 * 325.70644 * 15 14 13 17 17 C 1.54628 * 110.48469 * 203.16238 * 15 14 13 18 18 C 1.54488 * 101.76412 * 216.52919 * 17 15 14 19 19 N 1.46758 * 105.47438 * 25.41430 * 18 17 15 20 20 C 1.46501 * 124.35050 * 162.98218 * 19 18 17 21 21 C 1.53001 * 109.47177 * 59.99810 * 20 19 18 22 22 C 1.52997 * 109.47069 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.47002 * 299.99793 * 20 19 18 24 24 C 1.34661 * 111.33569 * 342.87154 * 19 18 17 25 25 O 1.21274 * 125.07021 * 180.50954 * 24 19 18 26 26 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 27 27 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 28 28 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 30 30 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 31 31 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 33 33 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 34 34 H 1.00891 * 111.00258 * 303.95434 * 14 13 2 35 35 H 1.09004 * 110.97111 * 334.63984 * 17 15 14 36 36 H 1.08998 * 110.97384 * 98.41011 * 17 15 14 37 37 H 1.09002 * 110.24555 * 144.41558 * 18 17 15 38 38 H 1.09002 * 110.23943 * 266.32715 * 18 17 15 39 39 H 1.09001 * 109.46704 * 59.99929 * 21 20 19 40 40 H 1.08993 * 109.47213 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46663 * 300.00672 * 21 20 19 42 42 H 1.08998 * 109.47292 * 59.99845 * 22 20 19 43 43 H 1.09006 * 109.46997 * 180.02562 * 22 20 19 44 44 H 1.08994 * 109.47250 * 299.99582 * 22 20 19 45 45 H 1.09006 * 109.46483 * 59.99984 * 23 20 19 46 46 H 1.08997 * 109.46888 * 179.97438 * 23 20 19 47 47 H 1.08998 * 109.47144 * 300.00024 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 1.6353 0.2717 -4.8000 9 14 2.9583 -1.9914 -3.9032 10 1 2.0192 -3.1365 -4.0132 11 1 3.8018 -1.9240 -5.1235 12 1 3.8253 -2.1750 -2.7116 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1257 -0.6268 3.6671 16 1 2.1006 -1.7097 3.5458 17 6 1.2713 -0.1984 4.8826 18 6 2.3300 -0.1379 6.0061 19 7 3.6075 0.1094 5.3274 20 6 4.8190 0.5907 5.9959 21 6 5.2342 -0.4068 7.0793 22 6 5.9462 0.7294 4.9707 23 6 4.5418 1.9525 6.6357 24 6 3.5245 -0.1649 4.0117 25 8 4.4354 -0.0566 3.2185 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 3.1264 -0.7994 -1.2056 31 1 1.8794 -0.0531 -5.6807 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 1.9882 0.9871 2.3967 35 1 0.8214 0.7807 4.7176 36 1 0.5083 -0.9441 5.1054 37 1 2.1041 0.6771 6.6937 38 1 2.3641 -1.0857 6.5435 39 1 5.4317 -1.3770 6.6234 40 1 6.1358 -0.0490 7.5763 41 1 4.4309 -0.5052 7.8095 42 1 5.6502 1.4402 4.1992 43 1 6.8478 1.0871 5.4681 44 1 6.1439 -0.2405 4.5145 45 1 3.7385 1.8540 7.3660 46 1 5.4430 2.3104 7.1334 47 1 4.2460 2.6631 5.8639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602703314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:22 Heat of formation + Delta-G solvation = -46.524172 kcal Electronic energy + Delta-G solvation = -23182.321996 eV Core-core repulsion = 19978.470441 eV Total energy + Delta-G solvation = -3203.851555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98263 -37.36480 -36.62427 -35.65094 -33.31357 -31.81333 -29.60391 -27.89643 -27.68865 -27.39124 -26.49987 -24.57633 -22.42620 -21.95650 -21.06927 -19.10423 -18.74412 -17.06677 -16.63126 -16.48991 -15.62548 -14.91785 -14.73864 -14.41567 -14.15919 -14.08796 -13.89621 -13.47736 -13.39722 -13.09455 -12.96581 -12.56593 -12.40274 -12.26218 -12.08751 -11.92753 -11.82034 -11.66259 -11.54448 -11.47057 -11.30166 -11.09992 -10.90894 -10.71729 -10.40356 -9.84935 -9.70903 -9.65376 -9.33566 -8.98467 -8.85839 -8.44904 -8.12125 -5.95661 -3.92010 2.48898 2.73809 3.37076 3.44273 3.50002 4.07928 4.26597 4.40944 4.53553 4.57188 4.61446 4.71850 4.85603 4.92619 5.13626 5.19381 5.24651 5.30784 5.38382 5.39768 5.48162 5.55118 5.64204 5.66434 5.70233 5.71087 5.80459 5.92756 5.99008 6.13760 6.16001 6.34336 6.51034 6.51850 6.63930 6.87896 6.98401 7.07864 7.16083 7.23727 7.38516 7.46443 7.58082 7.89892 8.12085 8.64345 9.10196 9.67721 11.17867 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026168 B = 0.003511 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.760845 B = 7974.072914 C = 8481.751215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.510 4.510 6 H 0.073 0.927 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.056 3.944 14 N -0.657 5.657 15 C 0.055 3.945 16 H 0.110 0.890 17 C -0.119 4.119 18 C 0.101 3.899 19 N -0.613 5.613 20 C 0.171 3.829 21 C -0.156 4.156 22 C -0.141 4.141 23 C -0.157 4.157 24 C 0.487 3.513 25 O -0.517 6.517 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.011 0.989 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.342 0.658 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -0.797 28.464 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.073 4.073 14 N -0.286 5.286 15 C -0.059 4.059 16 H 0.128 0.872 17 C -0.157 4.157 18 C -0.022 4.022 19 N -0.349 5.349 20 C 0.088 3.912 21 C -0.214 4.214 22 C -0.199 4.199 23 C -0.215 4.215 24 C 0.272 3.728 25 O -0.392 6.392 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.931 -0.999 27.889 28.060 hybrid contribution 1.463 -0.687 -0.168 1.625 sum 4.394 -1.686 27.721 28.118 Atomic orbital electron populations 1.21610 0.95345 1.00589 1.00630 1.20992 0.96149 0.99104 0.92920 0.92236 1.19607 0.95874 0.95795 0.93405 1.21140 1.35144 1.09462 0.89090 0.90843 1.25022 0.95669 0.96964 0.95957 1.69920 1.47352 1.39420 0.97939 0.86811 0.80697 0.84362 0.77628 1.20390 1.21521 1.19041 1.22312 0.98590 0.97238 0.89134 1.60851 1.61275 1.05946 1.00572 1.22424 0.89902 1.01033 0.92585 0.87222 1.22639 0.96879 1.04040 0.92164 1.22066 0.82753 1.01418 0.95976 1.48545 1.11336 1.66192 1.08811 1.20461 0.84363 0.93385 0.93023 1.22177 1.01628 0.99424 0.98165 1.22092 0.95826 1.04032 0.97923 1.22180 1.02159 0.96214 1.00932 1.22173 0.91566 0.77052 0.81975 1.90762 1.43125 1.52720 1.52561 0.93779 0.92264 0.94214 0.97088 0.96812 0.92895 0.91580 0.94137 0.83945 0.89270 0.89012 0.90544 0.91333 0.92217 0.91393 0.92309 0.91196 0.92557 0.91280 0.92302 0.91383 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.49 2.48 -90.62 -0.22 -1.72 16 3 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.87 8.96 -34.44 -0.31 -15.18 16 6 H 0.07 2.28 7.30 -52.49 -0.38 1.90 16 7 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.66 13.96 55.43 0.77 -27.88 16 9 Si 0.88 22.56 27.46 -169.99 -4.67 17.89 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.66 6.55 56.52 0.37 -6.29 16 13 C 0.06 0.97 4.88 -3.82 -0.02 0.95 16 14 N -0.66 -9.28 5.76 -106.73 -0.61 -9.90 16 15 C 0.05 0.63 3.24 -67.72 -0.22 0.42 16 16 H 0.11 1.26 7.85 -51.93 -0.41 0.85 16 17 C -0.12 -0.93 6.89 -25.09 -0.17 -1.11 16 18 C 0.10 0.70 6.60 -3.12 -0.02 0.68 16 19 N -0.61 -6.09 2.76 -157.50 -0.44 -6.52 16 20 C 0.17 1.54 1.20 -131.82 -0.16 1.39 16 21 C -0.16 -1.11 8.54 37.16 0.32 -0.80 16 22 C -0.14 -1.57 7.00 37.16 0.26 -1.31 16 23 C -0.16 -1.15 8.49 37.16 0.32 -0.83 16 24 C 0.49 6.42 7.20 -10.75 -0.08 6.35 16 25 O -0.52 -8.87 13.11 5.56 0.07 -8.79 16 26 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 27 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.27 7.56 -51.93 -0.39 -0.13 16 30 H 0.01 0.35 7.21 -51.93 -0.37 -0.03 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.04 0.78 7.29 -51.93 -0.38 0.40 16 34 H 0.34 5.01 8.46 -39.30 -0.33 4.67 16 35 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.42 7.12 -51.93 -0.37 0.05 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 42 H 0.07 0.94 7.09 -51.93 -0.37 0.57 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.91 7.05 -51.93 -0.37 0.54 16 45 H 0.06 0.36 7.21 -51.93 -0.37 -0.01 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -33.03 361.67 -8.33 -41.36 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.73 Total: 0.13 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -0.17 Total: -11.73 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.28 Total: -44.30 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.03 -8.33 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.169 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds