Wall clock time and date at job start Tue Mar 31 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52998 * 109.47068 * 119.99945 * 2 1 3 5 5 C 1.50698 * 109.47292 * 295.00193 * 4 2 1 6 6 H 1.07994 * 120.00225 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99802 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99976 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99983 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46659 * 269.99130 * 9 7 5 11 11 H 1.48502 * 109.47169 * 29.99268 * 9 7 5 12 12 H 1.48497 * 109.46931 * 149.99920 * 9 7 5 13 13 C 1.53000 * 109.47243 * 240.00657 * 2 1 3 14 14 N 1.46896 * 109.47456 * 65.40583 * 13 2 1 15 15 C 1.46955 * 111.00394 * 198.51437 * 14 13 2 16 16 C 1.53052 * 109.36728 * 176.81380 * 15 14 13 17 17 N 1.46955 * 109.36580 * 58.40047 * 16 15 14 18 18 C 1.46897 * 111.00005 * 176.81578 * 17 16 15 19 19 H 1.08997 * 110.46256 * 63.12121 * 18 17 16 20 20 C 1.54512 * 110.51187 * 185.73344 * 18 17 16 21 21 C 1.54475 * 104.06438 * 118.64079 * 20 18 17 22 22 O 1.44423 * 104.80290 * 23.97947 * 21 20 18 23 23 C 1.44419 * 105.27537 * 319.48445 * 22 21 20 24 24 C 1.46964 * 110.87890 * 300.68066 * 17 16 15 25 25 C 1.46958 * 110.99887 * 74.71075 * 14 13 2 26 26 H 1.08994 * 109.47610 * 305.03345 * 1 2 3 27 27 H 1.09005 * 109.47392 * 65.04183 * 1 2 3 28 28 H 1.09005 * 109.46615 * 185.03667 * 1 2 3 29 29 H 1.08998 * 109.46431 * 175.00000 * 4 2 1 30 30 H 1.09002 * 109.46841 * 55.00783 * 4 2 1 31 31 H 0.97004 * 119.99900 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.46831 * 185.40830 * 13 2 1 33 33 H 1.09000 * 109.46909 * 305.40567 * 13 2 1 34 34 H 1.09004 * 109.48662 * 296.77934 * 15 14 13 35 35 H 1.09001 * 109.48985 * 56.84370 * 15 14 13 36 36 H 1.09002 * 109.48794 * 298.43000 * 16 15 14 37 37 H 1.09000 * 109.49087 * 178.37231 * 16 15 14 38 38 H 1.09000 * 110.50684 * 237.28739 * 20 18 17 39 39 H 1.08999 * 110.50599 * 359.85507 * 20 18 17 40 40 H 1.09004 * 110.37210 * 142.80775 * 21 20 18 41 41 H 1.08999 * 110.37317 * 265.14689 * 21 20 18 42 42 H 1.09003 * 110.37724 * 281.68396 * 23 22 21 43 43 H 1.09007 * 110.37192 * 159.34353 * 23 22 21 44 44 H 1.09004 * 109.48839 * 299.35362 * 24 17 16 45 45 H 1.09002 * 109.50184 * 179.30038 * 24 17 16 46 46 H 1.08997 * 109.49062 * 303.15849 * 25 14 13 47 47 H 1.09002 * 109.48222 * 63.22667 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0800 0.9741 2.3758 7 6 1.9923 -0.4023 3.7283 8 7 1.6449 0.2771 4.7993 9 14 2.9628 -1.9890 3.9027 10 1 2.0235 -3.1334 4.0189 11 1 3.8252 -2.1757 2.7082 12 1 3.8109 -1.9193 5.1197 13 6 2.0401 -0.7211 -1.2493 14 7 1.6599 0.0427 -2.4451 15 6 1.7292 -0.7960 -3.6499 16 6 1.2507 0.0116 -4.8587 17 7 2.0880 1.2103 -5.0062 18 6 1.7078 1.9741 -6.2020 19 1 0.6846 2.3389 -6.1117 20 6 2.6842 3.1505 -6.4261 21 6 3.3174 2.8555 -7.8039 22 8 2.3551 2.0176 -8.4804 23 6 1.8667 1.1076 -7.4709 24 6 2.0187 2.0491 -3.8014 25 6 2.4971 1.2414 -2.5925 26 1 -0.3634 0.5899 0.8414 27 1 -0.3634 0.4336 -0.9317 28 1 -0.3633 -1.0238 0.0902 29 1 3.1263 -0.7994 1.2055 30 1 1.6055 -1.7198 1.2950 31 1 1.8915 -0.0463 5.6800 32 1 3.1257 -0.8057 -1.2021 33 1 1.5998 -1.7170 -1.2991 34 1 2.7584 -1.1167 -3.8110 35 1 1.0914 -1.6706 -3.5213 36 1 0.2128 0.3091 -4.7096 37 1 1.3286 -0.5993 -5.7581 38 1 2.1434 4.0966 -6.4490 39 1 3.4475 3.1667 -5.6481 40 1 3.4696 3.7819 -8.3577 41 1 4.2622 2.3258 -7.6817 42 1 2.5890 0.3098 -7.2976 43 1 0.9044 0.6912 -7.7690 44 1 0.9894 2.3697 -3.6402 45 1 2.6563 2.9238 -3.9298 46 1 2.4192 1.8523 -1.6932 47 1 3.5351 0.9438 -2.7418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602706793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:46 Heat of formation + Delta-G solvation = -41.339776 kcal Electronic energy + Delta-G solvation = -23037.539847 eV Core-core repulsion = 19833.913105 eV Total energy + Delta-G solvation = -3203.626742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25750 -38.72634 -36.32356 -34.17051 -32.16462 -31.35082 -30.87671 -29.16283 -27.55957 -26.46509 -24.47162 -23.97039 -22.51388 -21.97042 -20.81289 -19.79289 -18.91261 -17.22638 -16.78143 -16.63549 -15.74826 -15.31271 -15.11459 -14.81976 -14.49472 -14.41212 -14.12748 -13.98915 -13.49426 -13.17753 -12.85909 -12.49245 -12.33671 -12.24982 -11.94752 -11.70599 -11.53537 -11.45017 -11.29862 -11.11181 -10.97771 -10.88226 -10.74821 -10.65012 -10.44529 -10.10051 -9.73691 -9.70064 -9.36620 -9.05194 -8.60298 -8.50726 -8.09184 -6.01030 -3.97786 3.31781 3.39256 3.42701 3.43034 3.80890 4.03709 4.19597 4.47572 4.49795 4.68914 4.76960 4.92436 4.98882 5.01926 5.16596 5.25352 5.32497 5.33445 5.40191 5.41017 5.44771 5.47687 5.56845 5.60217 5.61150 5.69369 5.80067 5.86635 5.96867 6.04041 6.05557 6.27135 6.37690 6.42395 6.61654 6.78825 6.81090 6.88074 7.04804 7.13930 7.25764 7.28253 7.37430 7.51448 7.84270 8.58915 9.05015 9.62063 11.12476 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040141 B = 0.002982 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.369859 B = 9388.335762 C = 9528.188340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.073 0.927 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.059 3.941 14 N -0.535 5.535 15 C 0.057 3.943 16 C 0.056 3.944 17 N -0.531 5.531 18 C 0.050 3.950 19 H 0.056 0.944 20 C -0.151 4.151 21 C 0.049 3.951 22 O -0.378 6.378 23 C 0.053 3.947 24 C 0.057 3.943 25 C 0.057 3.943 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 2.333 -24.537 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.071 4.071 16 C -0.072 4.072 17 N -0.257 5.257 18 C -0.059 4.059 19 H 0.074 0.926 20 C -0.189 4.189 21 C -0.028 4.028 22 O -0.296 6.296 23 C -0.024 4.024 24 C -0.071 4.071 25 C -0.072 4.072 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.585 2.340 -24.579 24.741 hybrid contribution 0.572 -0.873 0.610 1.208 sum 2.156 1.467 -23.970 24.111 Atomic orbital electron populations 1.21575 0.95420 1.00661 1.00353 1.20984 0.96188 0.99122 0.92524 0.92123 1.19630 0.95684 0.95855 0.93587 1.21128 1.35156 1.09557 0.89077 0.90866 1.25031 0.95685 0.96927 0.95969 1.69916 1.47304 1.39307 0.97991 0.86808 0.80650 0.84398 0.77577 1.20391 1.19131 1.21517 1.22331 0.97774 0.96927 0.89806 1.62161 1.54069 1.07300 1.02472 1.22131 0.99949 0.95580 0.89482 1.22191 0.95291 0.91646 0.98071 1.62308 1.53834 1.07304 1.02281 1.23004 0.97853 0.93873 0.91139 0.92639 1.23035 0.99489 0.97901 0.98428 1.23376 0.92380 0.94933 0.92122 1.89121 1.58540 1.48931 1.32989 1.23476 0.99945 0.92693 0.86327 1.22217 1.00517 0.95540 0.88787 1.22178 0.94813 0.92609 0.97570 0.92537 0.93692 0.94308 0.97006 0.97140 0.92853 0.95094 0.91450 0.94393 0.90370 0.93783 0.90567 0.90632 0.89253 0.89210 0.92001 0.91077 0.89275 0.93789 0.90315 0.89506 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.87 37.16 0.33 -2.01 16 2 C -0.07 -1.35 2.38 -90.62 -0.22 -1.57 16 3 H 0.06 1.23 6.67 -51.93 -0.35 0.88 16 4 C -0.01 -0.23 3.52 -27.89 -0.10 -0.33 16 5 C -0.51 -14.43 9.03 -34.44 -0.31 -14.74 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C 0.06 0.95 4.38 -3.83 -0.02 0.93 16 14 N -0.54 -7.45 4.04 -234.47 -0.95 -8.40 16 15 C 0.06 0.67 5.57 -3.77 -0.02 0.65 16 16 C 0.06 0.56 5.39 -3.77 -0.02 0.54 16 17 N -0.53 -5.39 4.50 -224.60 -1.01 -6.40 16 18 C 0.05 0.45 2.83 -66.14 -0.19 0.26 16 19 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.15 -1.19 6.20 -25.16 -0.16 -1.34 16 21 C 0.05 0.39 7.63 37.93 0.29 0.68 16 22 O -0.38 -3.88 11.65 -35.23 -0.41 -4.29 16 23 C 0.05 0.46 6.02 37.94 0.23 0.69 16 24 C 0.06 0.62 5.36 -3.76 -0.02 0.60 16 25 C 0.06 0.74 5.44 -3.77 -0.02 0.72 16 26 H 0.06 1.19 7.10 -51.93 -0.37 0.82 16 27 H 0.04 0.77 7.63 -51.93 -0.40 0.38 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.03 0.51 8.01 -51.93 -0.42 0.09 16 33 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.64 6.82 -51.93 -0.35 0.29 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.71 6.62 -51.93 -0.34 0.37 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.63 7.72 -51.93 -0.40 0.23 16 43 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.76 6.40 -51.93 -0.33 0.42 16 46 H 0.09 1.22 6.65 -51.93 -0.35 0.87 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -30.62 351.75 -9.95 -40.58 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -8.67 Total: -3.59 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.32 Total: -13.13 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -1.18 Total: -42.05 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.41 Total: -4.29 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.62 -9.95 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602706793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds