Wall clock time and date at job start Tue Mar 31 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47220 * 2 1 4 4 C 1.53006 * 109.46792 * 119.99752 * 2 1 3 5 5 C 1.50702 * 109.46845 * 295.00162 * 4 2 1 6 6 H 1.07995 * 120.00487 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99540 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00156 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47179 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46955 * 120.00365 * 9 7 5 12 12 H 1.48498 * 109.47169 * 240.00017 * 9 7 5 13 13 C 1.52993 * 109.47160 * 239.99822 * 2 1 3 14 14 N 1.46897 * 109.47512 * 63.84034 * 13 2 1 15 15 C 1.46956 * 110.99904 * 75.78121 * 14 13 2 16 16 C 1.53053 * 109.36493 * 183.19096 * 15 14 13 17 17 N 1.46953 * 109.36624 * 301.59782 * 16 15 14 18 18 C 1.46897 * 111.00082 * 183.18425 * 17 16 15 19 19 H 1.08998 * 110.56661 * 302.68189 * 18 17 16 20 20 C 1.54513 * 110.50853 * 180.02562 * 18 17 16 21 21 C 1.54484 * 104.06143 * 241.35630 * 20 18 17 22 22 O 1.44421 * 104.89954 * 335.97048 * 21 20 18 23 23 C 1.44687 * 105.14422 * 40.49629 * 22 21 20 24 24 C 1.46966 * 110.87903 * 59.31936 * 17 16 15 25 25 C 1.46953 * 111.00458 * 199.58089 * 14 13 2 26 26 H 1.09005 * 109.46973 * 65.38767 * 1 2 3 27 27 H 1.09001 * 109.47438 * 185.38729 * 1 2 3 28 28 H 1.08997 * 109.47485 * 305.39103 * 1 2 3 29 29 H 1.08996 * 109.46745 * 54.99841 * 4 2 1 30 30 H 1.08995 * 109.46672 * 175.00197 * 4 2 1 31 31 H 0.96997 * 120.00105 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47278 * 303.83350 * 13 2 1 33 33 H 1.09004 * 109.46993 * 183.83734 * 13 2 1 34 34 H 1.09000 * 109.48974 * 63.22268 * 15 14 13 35 35 H 1.09001 * 109.50876 * 303.17127 * 15 14 13 36 36 H 1.09006 * 109.48922 * 181.63250 * 16 15 14 37 37 H 1.09000 * 109.48607 * 61.57023 * 16 15 14 38 38 H 1.08997 * 110.51070 * 122.71476 * 20 18 17 39 39 H 1.08996 * 110.51084 * 0.02562 * 20 18 17 40 40 H 1.09000 * 110.36965 * 94.85330 * 21 20 18 41 41 H 1.08999 * 110.37329 * 217.08017 * 21 20 18 42 42 H 1.09001 * 110.35731 * 200.67879 * 23 22 21 43 43 H 1.08994 * 110.44863 * 78.40678 * 23 22 21 44 44 H 1.09003 * 109.48360 * 60.64386 * 24 17 16 45 45 H 1.08997 * 109.48987 * 180.71314 * 24 17 16 46 46 H 1.08996 * 109.48959 * 296.78171 * 25 14 13 47 47 H 1.08999 * 109.48329 * 56.82190 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9747 2.3757 7 6 1.9921 -0.4021 3.7284 8 7 2.6753 -1.5192 3.8514 9 14 1.4985 0.5630 5.2496 10 1 0.7421 1.7746 4.8433 11 1 0.6437 -0.2855 6.1184 12 1 2.7167 0.9668 5.9966 13 6 2.0400 -0.7213 -1.2492 14 7 1.6276 0.0226 -2.4469 15 6 2.4526 1.2249 -2.6301 16 6 1.9413 2.0117 -3.8392 17 7 1.9897 1.1563 -5.0332 18 6 1.5771 1.9002 -6.2308 19 1 0.5756 2.3102 -6.1009 20 6 1.6315 0.9906 -7.4786 21 6 2.6681 1.6749 -8.3971 22 8 2.6706 3.0597 -7.9871 23 6 2.5874 3.0265 -6.5430 24 6 1.1646 -0.0460 -4.8499 25 6 1.6760 -0.8328 -3.6408 26 1 -0.3633 0.4280 -0.9343 27 1 -0.3634 -1.0231 0.0965 28 1 -0.3634 0.5951 0.8377 29 1 1.6052 -1.7197 1.2952 30 1 3.1262 -0.7994 1.2057 31 1 2.9225 -1.8421 4.7320 32 1 1.6217 -1.7271 -1.2842 33 1 3.1279 -0.7812 -1.2154 34 1 3.4891 0.9325 -2.7984 35 1 2.3908 1.8482 -1.7381 36 1 2.5697 2.8888 -3.9946 37 1 0.9136 2.3275 -3.6594 38 1 0.6571 0.9512 -7.9653 39 1 1.9641 -0.0112 -7.2067 40 1 3.6542 1.2341 -8.2508 41 1 2.3658 1.5887 -9.4408 42 1 2.2219 3.9803 -6.1623 43 1 3.5605 2.7940 -6.1108 44 1 0.1282 0.2465 -4.6816 45 1 1.2268 -0.6692 -5.7420 46 1 2.7036 -1.1486 -3.8205 47 1 1.0479 -1.7099 -3.4853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602706795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:51 Heat of formation + Delta-G solvation = -43.985712 kcal Electronic energy + Delta-G solvation = -22987.850267 eV Core-core repulsion = 19784.108789 eV Total energy + Delta-G solvation = -3203.741479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21685 -38.65867 -36.22754 -34.09324 -32.12700 -31.44317 -30.65079 -29.13440 -27.04785 -26.32252 -24.30986 -24.13056 -22.44460 -22.30514 -20.79714 -19.73524 -18.84223 -17.18384 -16.69444 -16.29572 -15.71295 -15.23566 -14.95953 -14.77607 -14.56715 -14.36291 -14.28704 -13.96044 -13.36287 -13.15435 -12.58442 -12.45566 -12.32407 -12.14770 -11.90298 -11.55120 -11.39562 -11.30844 -11.21458 -11.08261 -10.86361 -10.83949 -10.68075 -10.67735 -10.27930 -10.22067 -10.07975 -9.59910 -9.10238 -8.94288 -8.56766 -8.32060 -8.01480 -5.96790 -3.97640 3.32403 3.40043 3.44125 3.45889 3.83882 4.10644 4.20182 4.49313 4.51982 4.69302 4.81258 4.96599 5.00189 5.07431 5.20788 5.30737 5.35360 5.39266 5.42066 5.44391 5.47423 5.53431 5.56765 5.60634 5.69732 5.77606 5.87613 5.93373 6.02149 6.11344 6.18568 6.38338 6.39723 6.55359 6.72170 6.82620 6.86171 7.04116 7.16010 7.21734 7.37590 7.44130 7.71138 7.87231 8.03853 8.48246 9.09138 9.65776 11.14832 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040938 B = 0.002882 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.801197 B = 9713.387783 C = 9984.726625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 H 0.054 0.946 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.057 3.943 16 C 0.057 3.943 17 N -0.531 5.531 18 C 0.051 3.949 19 H 0.055 0.945 20 C -0.152 4.152 21 C 0.048 3.952 22 O -0.378 6.378 23 C 0.053 3.947 24 C 0.056 3.944 25 C 0.057 3.943 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.038 0.962 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 4.630 -22.960 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.261 5.261 15 C -0.071 4.071 16 C -0.071 4.071 17 N -0.257 5.257 18 C -0.058 4.058 19 H 0.073 0.927 20 C -0.190 4.190 21 C -0.028 4.028 22 O -0.296 6.296 23 C -0.024 4.024 24 C -0.071 4.071 25 C -0.072 4.072 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.526 4.709 -22.978 23.505 hybrid contribution -0.223 0.171 1.157 1.191 sum -1.749 4.880 -21.821 22.428 Atomic orbital electron populations 1.21560 0.95882 1.00549 0.99838 1.21168 0.95839 0.98982 0.93643 0.92784 1.19142 0.95894 0.95537 0.90540 1.21272 1.34408 1.08212 0.90959 0.92561 1.25026 0.95378 0.95103 0.99101 1.69976 1.39233 1.21290 1.23235 0.86583 0.78237 0.80150 0.83327 1.19760 1.21107 1.21119 1.22306 0.97632 0.97099 0.89531 1.62190 1.54015 1.07104 1.02773 1.22157 0.94916 0.92742 0.97296 1.22210 1.00416 0.95340 0.89154 1.62295 1.53810 1.07175 1.02412 1.22991 0.97805 0.94244 0.90804 0.92659 1.23082 1.00314 1.00504 0.95122 1.23360 0.98530 0.82004 0.98951 1.89177 1.95262 1.24789 1.20361 1.23506 0.99112 0.98307 0.81502 1.22226 0.95247 0.91664 0.97997 1.22135 0.99896 0.95543 0.89609 0.93887 0.94268 0.93113 0.96643 0.96979 0.93177 0.91488 0.95040 0.94311 0.89622 0.90530 0.93776 0.90658 0.89250 0.92017 0.89291 0.89251 0.90920 0.93930 0.90364 0.94411 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.86 37.16 0.33 -2.02 16 2 C -0.08 -1.57 2.39 -90.62 -0.22 -1.79 16 3 H 0.05 1.12 6.77 -51.93 -0.35 0.77 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.30 8.47 -34.44 -0.29 -14.59 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.06 1.06 4.40 -3.83 -0.02 1.04 16 14 N -0.54 -7.80 3.95 -234.48 -0.93 -8.72 16 15 C 0.06 0.77 5.43 -3.77 -0.02 0.75 16 16 C 0.06 0.63 5.46 -3.77 -0.02 0.61 16 17 N -0.53 -5.56 4.52 -224.60 -1.01 -6.57 16 18 C 0.05 0.46 2.84 -66.14 -0.19 0.28 16 19 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 20 C -0.15 -1.18 6.20 -25.16 -0.16 -1.34 16 21 C 0.05 0.39 7.62 37.94 0.29 0.68 16 22 O -0.38 -3.99 11.67 -35.23 -0.41 -4.40 16 23 C 0.05 0.49 6.16 37.94 0.23 0.72 16 24 C 0.06 0.59 5.31 -3.76 -0.02 0.57 16 25 C 0.06 0.70 5.57 -3.77 -0.02 0.67 16 26 H 0.04 0.75 7.57 -51.93 -0.39 0.36 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.05 7.12 -51.93 -0.37 0.68 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.15 7.84 -51.93 -0.41 0.74 16 33 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.23 6.73 -51.93 -0.35 0.88 16 36 H 0.08 0.75 7.20 -51.93 -0.37 0.38 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.68 6.21 -51.93 -0.32 0.36 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.69 6.04 -51.93 -0.31 0.37 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.91 8.00 -51.93 -0.42 0.50 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -30.23 355.45 -10.31 -40.54 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -8.71 Total: -4.22 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.32 Total: -12.39 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -1.21 Total: -41.62 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.41 Total: -4.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.23 -10.31 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602706795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.445 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds