Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46819 * 2 1 4 4 C 1.53002 * 109.47320 * 240.00579 * 2 1 3 5 5 C 1.50696 * 109.46997 * 64.99219 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.52996 * 109.47495 * 119.99724 * 2 1 3 14 14 N 1.46897 * 109.47615 * 295.00695 * 13 2 1 15 15 C 1.46960 * 110.99684 * 293.79685 * 14 13 2 16 16 C 1.53044 * 109.36520 * 176.81442 * 15 14 13 17 17 N 1.46949 * 109.36823 * 58.39578 * 16 15 14 18 18 C 1.46898 * 111.00301 * 176.81226 * 17 16 15 19 19 H 1.09004 * 110.43619 * 72.70776 * 18 17 16 20 20 C 1.54810 * 110.49150 * 310.02523 * 18 17 16 21 21 C 1.54993 * 102.09490 * 220.44513 * 20 18 17 22 22 O 1.44380 * 103.49428 * 37.01627 * 21 20 18 23 23 C 1.43744 * 106.97446 * 319.94749 * 22 21 20 24 24 C 1.46960 * 110.88253 * 300.68413 * 17 16 15 25 25 C 1.46957 * 111.00176 * 169.99902 * 14 13 2 26 26 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47216 * 299.99675 * 1 2 3 28 28 H 1.09004 * 109.47510 * 59.99755 * 1 2 3 29 29 H 1.09005 * 109.46767 * 304.99570 * 4 2 1 30 30 H 1.09002 * 109.47113 * 184.99910 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09010 * 109.46910 * 55.00408 * 13 2 1 33 33 H 1.08995 * 109.47577 * 174.99740 * 13 2 1 34 34 H 1.09002 * 109.48765 * 296.77959 * 15 14 13 35 35 H 1.09001 * 109.48948 * 56.84198 * 15 14 13 36 36 H 1.09011 * 109.48885 * 298.43007 * 16 15 14 37 37 H 1.09002 * 109.49028 * 178.36919 * 16 15 14 38 38 H 1.09005 * 110.90078 * 338.63719 * 20 18 17 39 39 H 1.08993 * 110.90862 * 102.24077 * 20 18 17 40 40 H 1.09009 * 110.61428 * 278.51929 * 21 20 18 41 41 H 1.08995 * 110.75834 * 155.58819 * 21 20 18 42 42 H 1.09010 * 109.87680 * 267.08596 * 23 22 21 43 43 H 1.08996 * 110.00884 * 146.00673 * 23 22 21 44 44 H 1.09002 * 109.48765 * 299.34891 * 24 17 16 45 45 H 1.09001 * 109.48948 * 179.28651 * 24 17 16 46 46 H 1.08997 * 109.48495 * 303.15040 * 25 14 13 47 47 H 1.08999 * 109.49263 * 63.19470 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4765 6 1 1.0804 0.9746 -2.3756 7 6 1.9922 -0.4020 -3.7284 8 7 1.6446 0.2774 -4.7994 9 14 2.9616 -1.9893 -3.9029 10 1 4.4152 -1.6868 -3.8790 11 1 2.6268 -2.9000 -2.7787 12 1 2.6131 -2.6429 -5.1901 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.3371 1.3364 2.4914 16 6 1.8467 2.1266 3.7068 17 7 2.1078 1.3532 4.9287 18 6 1.7192 2.1117 6.1251 19 1 0.6335 2.1587 6.2101 20 6 2.3243 3.5361 6.0839 21 6 2.7580 3.7474 7.5569 22 8 3.2304 2.4438 7.9593 23 6 2.3322 1.4774 7.3887 24 6 1.4221 0.0541 4.8830 25 6 1.9127 -0.7361 3.6676 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.6054 -1.7197 -1.2952 30 1 3.1263 -0.7993 -1.2056 31 1 1.8919 -0.0455 -5.6800 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7994 1.2056 34 1 3.4125 1.1773 2.5708 35 1 2.1181 1.8954 1.5816 36 1 0.7760 2.3093 3.6140 37 1 2.3751 3.0786 3.7590 38 1 3.1848 3.5739 5.4159 39 1 1.5732 4.2694 5.7905 40 1 1.9080 4.0529 8.1672 41 1 3.5596 4.4831 7.6218 42 1 1.5441 1.2371 8.1024 43 1 2.8784 0.5728 7.1216 44 1 0.3467 0.2132 4.8035 45 1 1.6410 -0.5049 5.7927 46 1 1.3842 -1.6880 3.6153 47 1 2.9832 -0.9191 3.7603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602706797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -39.874352 kcal Electronic energy + Delta-G solvation = -23068.128517 eV Core-core repulsion = 19864.565320 eV Total energy + Delta-G solvation = -3203.563197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25319 -38.72527 -36.33244 -34.14658 -32.17283 -31.35001 -30.84629 -29.21544 -27.55374 -26.48821 -24.40829 -23.99293 -22.38631 -21.98487 -20.89367 -19.80021 -18.87313 -17.29208 -16.76969 -16.59864 -15.76709 -15.35836 -14.99187 -14.86685 -14.48650 -14.46056 -14.15657 -13.89874 -13.47439 -13.18407 -12.83625 -12.37678 -12.33762 -12.11224 -11.90922 -11.76526 -11.70362 -11.39606 -11.35152 -11.26197 -10.95162 -10.87862 -10.74883 -10.64659 -10.32069 -9.94668 -9.88585 -9.57959 -9.39220 -9.04204 -8.57056 -8.50474 -8.08192 -6.01119 -3.97851 3.32039 3.39617 3.43366 3.52771 3.65854 4.05713 4.14122 4.47808 4.58013 4.76572 4.77644 4.85234 4.98461 5.02936 5.15091 5.26031 5.32547 5.34607 5.35540 5.39154 5.44098 5.48223 5.53264 5.61709 5.64963 5.72716 5.81221 5.87965 5.99148 6.05749 6.06202 6.29031 6.42503 6.53235 6.60221 6.79758 6.82875 6.87984 7.03817 7.14472 7.25837 7.29700 7.36936 7.51663 7.84196 8.58586 9.04670 9.62001 11.12364 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.003040 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.682200 B = 9208.354002 C = 9420.888114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.289 1.289 13 C 0.059 3.941 14 N -0.535 5.535 15 C 0.054 3.946 16 C 0.057 3.943 17 N -0.530 5.530 18 C 0.050 3.950 19 H 0.056 0.944 20 C -0.152 4.152 21 C 0.048 3.952 22 O -0.376 6.376 23 C 0.056 3.944 24 C 0.057 3.943 25 C 0.057 3.943 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.015 0.985 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 3.464 24.692 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.074 4.074 16 C -0.071 4.071 17 N -0.256 5.256 18 C -0.059 4.059 19 H 0.074 0.926 20 C -0.190 4.190 21 C -0.029 4.029 22 O -0.294 6.294 23 C -0.021 4.021 24 C -0.071 4.071 25 C -0.072 4.072 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.131 3.403 24.631 24.865 hybrid contribution 0.303 -0.835 -0.467 1.004 sum 0.434 2.568 24.164 24.304 Atomic orbital electron populations 1.21576 0.95337 1.00532 1.00563 1.21028 0.96271 0.99128 0.92655 0.92042 1.19621 0.95360 0.96236 0.93523 1.21127 1.35275 1.09471 0.89083 0.90858 1.25031 0.95717 0.96890 0.95966 1.69917 1.47274 1.39309 0.98007 0.86808 0.80598 0.84571 0.77461 1.20436 1.19068 1.21496 1.22328 0.97611 0.97199 0.89682 1.62184 1.57963 1.03857 1.01993 1.22202 0.96349 0.91076 0.97760 1.22231 0.99662 0.96560 0.88624 1.62299 1.57830 1.03868 1.01579 1.23036 0.97909 0.93554 0.91395 0.92628 1.23297 1.02114 0.95446 0.98126 1.23513 0.99501 0.86472 0.93412 1.88889 1.51200 1.15413 1.73913 1.23204 0.93273 0.93310 0.92343 1.22193 0.96618 0.90085 0.98203 1.22111 0.99317 0.96406 0.89352 0.94300 0.93851 0.92293 0.96658 0.97418 0.92847 0.91311 0.95285 0.94273 0.89297 0.93921 0.90182 0.89085 0.90156 0.92323 0.88839 0.92502 0.88898 0.93867 0.90636 0.90426 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.15 0.33 -2.00 16 2 C -0.07 -1.41 2.26 -90.62 -0.21 -1.61 16 3 H 0.06 1.24 6.28 -51.93 -0.33 0.91 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.44 8.96 -34.44 -0.31 -14.74 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 9 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.06 0.97 4.35 -3.83 -0.02 0.95 16 14 N -0.54 -7.57 4.16 -234.47 -0.98 -8.55 16 15 C 0.05 0.73 5.42 -3.77 -0.02 0.71 16 16 C 0.06 0.64 5.24 -3.77 -0.02 0.62 16 17 N -0.53 -5.61 4.47 -224.66 -1.00 -6.61 16 18 C 0.05 0.45 2.79 -66.18 -0.18 0.26 16 19 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 20 C -0.15 -1.20 5.55 -24.72 -0.14 -1.33 16 21 C 0.05 0.37 7.72 38.21 0.29 0.66 16 22 O -0.38 -4.00 11.52 -35.23 -0.41 -4.41 16 23 C 0.06 0.51 6.96 37.73 0.26 0.77 16 24 C 0.06 0.59 5.42 -3.77 -0.02 0.57 16 25 C 0.06 0.68 5.61 -3.77 -0.02 0.66 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.75 7.75 -51.92 -0.40 0.34 16 28 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 29 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.07 1.10 8.03 -51.92 -0.42 0.69 16 33 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.28 6.25 -51.93 -0.32 0.96 16 36 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.08 0.80 6.18 -51.93 -0.32 0.48 16 38 H 0.09 0.81 6.98 -51.93 -0.36 0.44 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.09 0.88 7.12 -51.93 -0.37 0.51 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.66 6.99 -51.93 -0.36 0.29 16 46 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 47 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -30.85 350.98 -9.87 -40.71 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.63 Total: -3.36 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.24 Total: -13.04 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -1.21 Total: -42.41 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.41 Total: -4.41 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.85 -9.87 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602706797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.838 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds