Wall clock time and date at job start Tue Mar 31 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99861 * 2 1 4 4 N 1.34775 * 119.99789 * 179.97438 * 2 1 3 5 5 C 1.46508 * 119.99895 * 179.73060 * 4 2 1 6 6 C 1.52996 * 109.47129 * 175.22666 * 5 4 2 7 7 H 1.09003 * 109.45881 * 174.39506 * 6 5 4 8 8 C 1.53036 * 109.46014 * 294.35890 * 6 5 4 9 9 C 1.53121 * 109.27713 * 179.19452 * 8 6 5 10 10 C 1.53116 * 109.16385 * 302.35010 * 9 8 6 11 11 C 1.53035 * 109.27940 * 57.65189 * 10 9 8 12 12 N 1.46842 * 109.46398 * 54.41591 * 6 5 4 13 13 C 1.46902 * 111.00230 * 54.14404 * 12 6 5 14 14 C 1.52999 * 109.47138 * 176.30536 * 13 12 6 15 15 H 1.09006 * 109.46824 * 301.86123 * 14 13 12 16 16 C 1.52999 * 109.47475 * 61.86430 * 14 13 12 17 17 C 1.52996 * 109.47275 * 181.86801 * 14 13 12 18 18 C 1.50694 * 109.47471 * 174.99778 * 17 14 13 19 19 H 1.07996 * 120.00096 * 359.97438 * 18 17 14 20 20 C 1.37881 * 120.00223 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00182 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46895 * 60.00196 * 22 20 18 24 24 H 1.48500 * 109.47388 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47296 * 300.00230 * 22 20 18 26 26 H 1.09003 * 109.47548 * 270.00311 * 1 2 3 27 27 H 1.09006 * 109.47105 * 30.00857 * 1 2 3 28 28 H 1.08997 * 109.47094 * 150.00217 * 1 2 3 29 29 H 0.96999 * 120.00027 * 359.97438 * 4 2 1 30 30 H 1.09001 * 109.46440 * 295.22245 * 5 4 2 31 31 H 1.08998 * 109.47061 * 55.22373 * 5 4 2 32 32 H 1.08998 * 109.50829 * 299.13505 * 8 6 5 33 33 H 1.08997 * 109.50565 * 59.26319 * 8 6 5 34 34 H 1.08997 * 109.52356 * 182.44301 * 9 8 6 35 35 H 1.08999 * 109.57339 * 62.28610 * 9 8 6 36 36 H 1.09006 * 109.50289 * 297.71121 * 10 9 8 37 37 H 1.08999 * 109.53681 * 177.61580 * 10 9 8 38 38 H 1.09000 * 109.46453 * 180.80892 * 11 10 9 39 39 H 1.08995 * 109.46427 * 60.83915 * 11 10 9 40 40 H 1.09002 * 109.46710 * 296.29922 * 13 12 6 41 41 H 1.08998 * 109.46809 * 56.30170 * 13 12 6 42 42 H 1.09005 * 109.47133 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46731 * 299.99793 * 16 14 13 44 44 H 1.08990 * 109.46963 * 59.99935 * 16 14 13 45 45 H 1.09004 * 109.46536 * 294.99983 * 17 14 13 46 46 H 1.09003 * 109.47125 * 54.99125 * 17 14 13 47 47 H 0.97005 * 119.99949 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 -0.0054 6 6 4.1563 -2.6044 0.1165 7 1 5.2413 -2.6144 0.0122 8 6 3.7707 -3.1679 1.4861 9 6 4.2660 -4.6126 1.5960 10 6 3.6638 -5.4384 0.4559 11 6 4.0525 -4.8091 -0.8838 12 7 3.5556 -3.4284 -0.9401 13 6 3.7893 -2.8382 -2.2649 14 6 3.2308 -3.7687 -3.3434 15 1 3.7066 -4.7461 -3.2619 16 6 1.7200 -3.9196 -3.1545 17 6 3.5154 -3.1766 -4.7251 18 6 3.0758 -4.1494 -5.7888 19 1 2.6377 -5.0955 -5.5075 20 6 3.2330 -3.8315 -7.1212 21 7 3.7661 -2.6792 -7.4638 22 14 2.6888 -5.0376 -8.4397 23 1 1.2331 -5.2976 -8.3022 24 1 2.9638 -4.4624 -9.7808 25 1 3.4360 -6.3114 -8.2842 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6958 -2.0072 0.0013 30 1 4.0053 -0.7319 -0.9379 31 1 4.0127 -0.5788 0.8355 32 1 4.2297 -2.5653 2.2700 33 1 2.6866 -3.1455 1.5968 34 1 3.9558 -5.0322 2.5529 35 1 5.3535 -4.6323 1.5250 36 1 2.5779 -5.4517 0.5503 37 1 4.0457 -6.4582 0.5033 38 1 3.6134 -5.3865 -1.6974 39 1 5.1379 -4.8087 -0.9836 40 1 3.2897 -1.8713 -2.3251 41 1 4.8599 -2.7044 -2.4192 42 1 1.3222 -4.5829 -3.9227 43 1 1.5173 -4.3415 -2.1701 44 1 1.2444 -2.9423 -3.2360 45 1 2.9676 -2.2412 -4.8393 46 1 4.5840 -2.9864 -4.8258 47 1 3.8764 -2.4553 -8.4012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602734907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:14 Heat of formation + Delta-G solvation = -61.750230 kcal Electronic energy + Delta-G solvation = -23670.829330 eV Core-core repulsion = 20466.317524 eV Total energy + Delta-G solvation = -3204.511806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05728 -38.84865 -35.69028 -34.70027 -32.98309 -31.80451 -31.16517 -29.54774 -26.99915 -26.39268 -25.62987 -23.74688 -22.36942 -21.30274 -20.69219 -19.47893 -18.71841 -16.87754 -16.53897 -16.12279 -15.54927 -15.21416 -14.81134 -14.61988 -14.46155 -14.13009 -13.86095 -13.54976 -13.29077 -13.12691 -12.71563 -12.55010 -12.35591 -12.12848 -11.91407 -11.85968 -11.55698 -11.41383 -11.21898 -10.90210 -10.86200 -10.72563 -10.60564 -10.35329 -10.22233 -10.14386 -9.81509 -9.56582 -9.16820 -8.95250 -8.92751 -8.33077 -8.10492 -5.97757 -3.99409 2.74635 3.33328 3.35465 3.38300 3.40086 4.02424 4.47149 4.61532 4.68529 4.84738 4.94139 5.12507 5.16360 5.26504 5.31766 5.35114 5.37839 5.49859 5.57122 5.60188 5.67988 5.77824 5.79793 5.83727 5.87706 5.88761 5.97915 6.05206 6.11834 6.19490 6.29464 6.41978 6.49155 6.53514 6.61804 6.98294 7.08332 7.17215 7.33391 7.38524 7.66805 7.68167 7.83851 8.01842 8.34491 8.45131 9.06733 9.63986 11.13640 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.004678 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.203666 B = 5983.743288 C = 7143.318127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.558 6.558 4 N -0.713 5.713 5 C 0.125 3.875 6 C 0.070 3.930 7 H 0.052 0.948 8 C -0.109 4.109 9 C -0.120 4.120 10 C -0.116 4.116 11 C 0.050 3.950 12 N -0.529 5.529 13 C 0.057 3.943 14 C -0.085 4.085 15 H 0.057 0.943 16 C -0.122 4.122 17 C 0.028 3.972 18 C -0.513 4.513 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.410 0.590 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.029 0.971 40 H 0.074 0.926 41 H 0.027 0.973 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.015 0.985 46 H 0.011 0.989 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -2.270 19.557 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.437 6.437 4 N -0.366 5.366 5 C 0.000 4.000 6 C -0.039 4.039 7 H 0.070 0.930 8 C -0.147 4.147 9 C -0.158 4.158 10 C -0.154 4.154 11 C -0.078 4.078 12 N -0.254 5.254 13 C -0.070 4.070 14 C -0.103 4.103 15 H 0.075 0.925 16 C -0.179 4.179 17 C -0.009 4.009 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.860 -1.427 19.481 19.742 hybrid contribution 0.509 -0.977 -1.091 1.550 sum -2.351 -2.404 18.391 18.695 Atomic orbital electron populations 1.21863 0.92013 1.05051 1.04291 1.20785 0.90590 0.83553 0.75647 1.90706 1.70915 1.31656 1.50405 1.45942 1.07107 1.08991 1.74548 1.21389 0.80748 0.95626 1.02202 1.21905 0.97108 0.92106 0.92763 0.92985 1.21602 1.01810 0.95910 0.95328 1.21575 1.00211 0.95430 0.98577 1.21596 1.01446 0.98196 0.94143 1.22189 0.97571 0.89892 0.98141 1.61996 1.58072 1.01748 1.03607 1.22379 0.98435 0.99116 0.87026 1.21306 0.95839 0.97636 0.95546 0.92457 1.21580 0.95933 1.00812 0.99560 1.19101 0.96560 0.96161 0.89111 1.21165 1.40240 1.02945 0.90826 0.92698 1.25017 0.95448 0.95237 0.98774 1.69958 1.44641 1.21820 1.17115 0.86702 0.79142 0.81375 0.81026 1.20284 1.21371 1.20345 0.89273 0.89069 0.89971 0.75384 0.91370 0.91285 0.91813 0.91158 0.92112 0.92425 0.91221 0.91897 0.89218 0.95250 0.90752 0.95499 0.92816 0.94025 0.94137 0.96632 0.97042 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.30 36.01 0.37 -1.21 16 2 C 0.51 6.71 7.94 -10.99 -0.09 6.62 16 3 O -0.56 -9.86 17.10 5.56 0.09 -9.77 16 4 N -0.71 -8.37 4.96 -60.29 -0.30 -8.67 16 5 C 0.12 1.54 4.56 -4.04 -0.02 1.52 16 6 C 0.07 0.79 2.10 -67.73 -0.14 0.64 16 7 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 8 C -0.11 -0.99 5.26 -26.65 -0.14 -1.13 16 9 C -0.12 -1.06 6.00 -26.61 -0.16 -1.22 16 10 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 11 C 0.05 0.62 4.97 -3.83 -0.02 0.60 16 12 N -0.53 -6.76 3.26 -226.69 -0.74 -7.50 16 13 C 0.06 0.94 3.88 -3.82 -0.01 0.93 16 14 C -0.08 -1.64 1.85 -90.62 -0.17 -1.81 16 15 H 0.06 1.12 6.08 -51.93 -0.32 0.81 16 16 C -0.12 -2.18 8.79 37.16 0.33 -1.86 16 17 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 18 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 19 H 0.05 1.47 7.06 -52.49 -0.37 1.10 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 22 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.41 4.28 7.43 -40.82 -0.30 3.98 16 30 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.64 7.32 -51.93 -0.38 0.26 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.25 5.70 -51.93 -0.30 0.95 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.30 6.47 -51.93 -0.34 0.96 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 43 H 0.04 0.64 7.54 -51.93 -0.39 0.25 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -31.57 361.25 -9.09 -40.66 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.58 Total: 0.10 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.73 Total: -10.59 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.30 Total: -42.40 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.57 -9.09 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602734907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.093 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds