Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21285 * 120.00094 * 2 1 4 4 N 1.34779 * 120.00243 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00358 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47214 * 184.77658 * 5 4 2 7 7 H 1.08992 * 109.45834 * 55.57674 * 6 5 4 8 8 C 1.53042 * 109.45870 * 295.60198 * 6 5 4 9 9 C 1.53115 * 109.27651 * 180.80563 * 8 6 5 10 10 C 1.53124 * 109.16082 * 57.65920 * 9 8 6 11 11 C 1.53043 * 109.27652 * 302.34082 * 10 9 8 12 12 N 1.46849 * 109.51980 * 59.18300 * 11 10 9 13 13 C 1.46900 * 110.99912 * 174.16228 * 12 11 10 14 14 C 1.53000 * 109.47362 * 62.54311 * 13 12 11 15 15 H 1.09000 * 109.46886 * 326.04411 * 14 13 12 16 16 C 1.52999 * 109.46900 * 86.04003 * 14 13 12 17 17 C 1.52998 * 109.46875 * 206.04035 * 14 13 12 18 18 C 1.50701 * 109.46694 * 174.99927 * 17 14 13 19 19 H 1.08000 * 120.00449 * 0.02562 * 18 17 14 20 20 C 1.37879 * 119.99649 * 179.97438 * 18 17 14 21 21 N 1.31506 * 120.00244 * 359.73727 * 20 18 17 22 22 Si 1.86806 * 119.99671 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46861 * 90.00831 * 22 20 18 24 24 H 1.48504 * 109.47059 * 210.00540 * 22 20 18 25 25 H 1.48496 * 109.47163 * 330.00525 * 22 20 18 26 26 H 1.09001 * 109.46770 * 239.99740 * 1 2 3 27 27 H 1.09001 * 109.46808 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46857 * 119.99621 * 1 2 3 29 29 H 0.96997 * 119.99597 * 0.02562 * 4 2 1 30 30 H 1.09000 * 109.46804 * 64.76866 * 5 4 2 31 31 H 1.09003 * 109.47053 * 304.77413 * 5 4 2 32 32 H 1.09000 * 109.50209 * 60.86587 * 8 6 5 33 33 H 1.08995 * 109.53698 * 300.77091 * 8 6 5 34 34 H 1.08996 * 109.52808 * 297.75360 * 9 8 6 35 35 H 1.08997 * 109.57913 * 177.59464 * 9 8 6 36 36 H 1.08995 * 109.50369 * 182.40464 * 10 9 8 37 37 H 1.08997 * 109.53475 * 62.30552 * 10 9 8 38 38 H 1.08998 * 109.46231 * 299.16898 * 11 10 9 39 39 H 1.08998 * 109.45925 * 179.19502 * 11 10 9 40 40 H 1.09005 * 109.46615 * 302.54157 * 13 12 11 41 41 H 1.09002 * 109.47072 * 182.54900 * 13 12 11 42 42 H 1.09001 * 109.47037 * 171.33239 * 16 14 13 43 43 H 1.09000 * 109.47532 * 291.33568 * 16 14 13 44 44 H 1.09001 * 109.47038 * 51.33589 * 16 14 13 45 45 H 1.09001 * 109.47368 * 55.00490 * 17 14 13 46 46 H 1.09001 * 109.47441 * 294.99924 * 17 14 13 47 47 H 0.97001 * 120.00412 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0000 6 6 4.1559 -2.6047 -0.1194 7 1 3.7289 -3.0689 -1.0083 8 6 3.7384 -3.3984 1.1208 9 6 4.2680 -4.8305 1.0063 10 6 5.7904 -4.7922 0.8468 11 6 6.1484 -3.9581 -0.3855 12 7 5.6205 -2.5970 -0.2270 13 6 6.0629 -1.7294 -1.3268 14 6 5.5107 -2.2622 -2.6505 15 1 5.4683 -3.3507 -2.6146 16 6 4.1043 -1.7043 -2.8777 17 6 6.4244 -1.8247 -3.7971 18 6 5.9504 -2.4504 -5.0836 19 1 5.0840 -3.0951 -5.0835 20 6 6.6224 -2.1988 -6.2609 21 7 7.6738 -1.4088 -6.2622 22 14 6.0354 -2.9749 -7.8555 23 1 5.0547 -2.0740 -8.5127 24 1 7.1948 -3.1876 -8.7587 25 1 5.3901 -4.2798 -7.5627 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6960 -2.0072 0.0005 30 1 4.0096 -0.7285 0.9292 31 1 4.0090 -0.5817 -0.8447 32 1 2.6509 -3.4171 1.1918 33 1 4.1532 -2.9271 2.0118 34 1 3.8228 -5.3152 0.1375 35 1 4.0100 -5.3883 1.9065 36 1 6.1689 -5.8067 0.7219 37 1 6.2385 -4.3430 1.7330 38 1 5.7119 -4.4159 -1.2732 39 1 7.2322 -3.9170 -0.4937 40 1 7.1522 -1.7188 -1.3654 41 1 5.6954 -0.7167 -1.1610 42 1 3.7719 -1.9561 -3.8848 43 1 3.4191 -2.1385 -2.1497 44 1 4.1200 -0.6207 -2.7607 45 1 7.4453 -2.1464 -3.5912 46 1 6.3972 -0.7390 -3.8894 47 1 8.1467 -1.2321 -7.0904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602734908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = -49.796301 kcal Electronic energy + Delta-G solvation = -23809.802919 eV Core-core repulsion = 20605.809474 eV Total energy + Delta-G solvation = -3203.993445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.24544 -39.03926 -35.56515 -34.89650 -32.99550 -31.56288 -31.33566 -29.63917 -27.06645 -26.71866 -25.28152 -23.77825 -22.25643 -21.27467 -20.64136 -20.03511 -18.67563 -16.96760 -16.38893 -16.31643 -15.63931 -15.42527 -14.80784 -14.64125 -14.34374 -14.08575 -13.97706 -13.33648 -13.25985 -12.82208 -12.78480 -12.56791 -12.34577 -12.25114 -12.12536 -11.91622 -11.66142 -11.34743 -11.06680 -10.87781 -10.82864 -10.61668 -10.49096 -10.36734 -10.25715 -10.13633 -9.90995 -9.64949 -9.33081 -9.10542 -8.95879 -8.34629 -7.78806 -5.98910 -4.00748 2.64935 3.16612 3.30542 3.37164 3.39375 4.19816 4.45608 4.66446 4.76165 4.79428 4.91748 5.10157 5.14515 5.21421 5.26203 5.35537 5.37290 5.56284 5.60634 5.64282 5.67297 5.79173 5.80692 5.86066 5.91554 5.98244 6.03446 6.09160 6.12760 6.22967 6.32537 6.37924 6.42654 6.50309 6.51374 6.87723 7.04753 7.11214 7.36318 7.42604 7.49139 7.66832 7.83106 8.00270 8.22313 8.43683 9.05200 9.62695 11.12161 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.005052 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.134102 B = 5540.756445 C = 6824.515001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.546 6.546 4 N -0.727 5.727 5 C 0.114 3.886 6 C 0.066 3.934 7 H 0.064 0.936 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.116 4.116 11 C 0.052 3.948 12 N -0.527 5.527 13 C 0.048 3.952 14 C -0.120 4.120 15 H 0.059 0.941 16 C -0.146 4.146 17 C 0.031 3.969 18 C -0.515 4.515 19 H 0.053 0.947 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.397 0.603 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 -5.309 16.149 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.423 6.423 4 N -0.380 5.380 5 C -0.010 4.010 6 C -0.043 4.043 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.158 4.158 10 C -0.154 4.154 11 C -0.076 4.076 12 N -0.251 5.251 13 C -0.079 4.079 14 C -0.140 4.140 15 H 0.078 0.922 16 C -0.202 4.202 17 C -0.006 4.006 18 C -0.553 4.553 19 H 0.071 0.929 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.232 0.768 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.770 -4.273 16.484 20.149 hybrid contribution -0.755 -1.165 -1.850 2.313 sum -11.525 -5.438 14.634 19.405 Atomic orbital electron populations 1.21916 0.91951 1.05422 1.04077 1.20749 0.90483 0.83509 0.75808 1.90742 1.70865 1.31398 1.49285 1.46010 1.07684 1.08586 1.75695 1.21658 0.78811 0.97003 1.03499 1.21989 0.89838 0.94508 0.97928 0.91826 1.21666 0.99469 0.95458 0.98376 1.21566 0.96322 0.96495 1.01420 1.21593 0.95651 0.99286 0.98862 1.22101 1.00317 0.88410 0.96731 1.62193 1.07728 1.10501 1.44702 1.22574 1.00666 0.96316 0.88369 1.21831 0.96486 0.99574 0.96129 0.92245 1.22218 0.96600 0.99772 1.01636 1.19088 0.93698 0.96650 0.91208 1.21215 1.12594 1.28765 0.92721 0.92870 1.25008 0.95068 0.95334 0.98989 1.69956 1.19414 1.36870 1.27168 0.86664 0.78286 0.79653 0.83813 1.20734 1.21241 1.20014 0.89630 0.89083 0.89415 0.76846 0.91353 0.89391 0.92200 0.91145 0.92265 0.92122 0.91831 0.91379 0.93861 0.90521 0.90619 0.90810 0.92007 0.93931 0.93710 0.96743 0.96567 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.32 36.01 0.37 -0.97 16 2 C 0.51 6.33 7.94 -10.98 -0.09 6.24 16 3 O -0.55 -9.57 17.08 5.55 0.09 -9.47 16 4 N -0.73 -7.95 5.26 -60.29 -0.32 -8.26 16 5 C 0.11 1.51 3.78 -4.05 -0.02 1.50 16 6 C 0.07 0.83 1.27 -67.72 -0.09 0.74 16 7 H 0.06 0.87 5.27 -51.93 -0.27 0.60 16 8 C -0.11 -1.12 5.23 -26.65 -0.14 -1.26 16 9 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 10 C -0.12 -1.25 6.09 -26.64 -0.16 -1.41 16 11 C 0.05 0.71 5.06 -3.83 -0.02 0.69 16 12 N -0.53 -7.54 4.69 -226.68 -1.06 -8.60 16 13 C 0.05 0.82 4.92 -3.82 -0.02 0.80 16 14 C -0.12 -2.38 1.85 -90.62 -0.17 -2.54 16 15 H 0.06 1.20 5.75 -51.93 -0.30 0.90 16 16 C -0.15 -2.71 7.53 37.16 0.28 -2.43 16 17 C 0.03 0.79 4.36 -27.88 -0.12 0.67 16 18 C -0.51 -14.32 8.28 -34.44 -0.29 -14.61 16 19 H 0.05 1.45 7.11 -52.49 -0.37 1.07 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.40 3.17 7.47 -40.82 -0.31 2.87 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.42 3.90 -51.93 -0.20 1.22 16 32 H 0.06 0.48 7.07 -51.93 -0.37 0.12 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.65 6.23 -51.93 -0.32 0.33 16 39 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.08 1.35 7.78 -51.93 -0.40 0.95 16 41 H 0.07 1.28 5.73 -51.93 -0.30 0.98 16 42 H 0.06 1.28 6.75 -51.93 -0.35 0.93 16 43 H 0.04 0.66 4.09 -51.93 -0.21 0.45 16 44 H 0.04 0.86 7.01 -51.93 -0.36 0.49 16 45 H 0.01 0.39 8.01 -51.93 -0.42 -0.03 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -32.44 349.24 -8.99 -41.43 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.97 Total: 1.57 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.71 Total: -12.38 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.65 Total: -43.09 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.44 -8.99 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602734908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.367 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds