Wall clock time and date at job start Tue Mar 31 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 120.00291 * 2 1 4 4 N 1.34772 * 119.99552 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99760 * 179.72352 * 4 2 1 6 6 C 1.53007 * 109.47048 * 174.54621 * 5 4 2 7 7 H 1.09003 * 109.45879 * 177.83104 * 6 5 4 8 8 C 1.53030 * 109.46249 * 297.80948 * 6 5 4 9 9 C 1.53123 * 109.27646 * 179.20558 * 8 6 5 10 10 C 1.53118 * 109.15240 * 302.33086 * 9 8 6 11 11 C 1.53031 * 109.27939 * 57.65795 * 10 9 8 12 12 N 1.46848 * 109.45855 * 57.85507 * 6 5 4 13 13 C 1.46900 * 111.00399 * 54.14430 * 12 6 5 14 14 C 1.53002 * 109.47049 * 273.73208 * 13 12 6 15 15 H 1.09007 * 109.46892 * 59.44355 * 14 13 12 16 16 C 1.52996 * 109.46947 * 299.44682 * 14 13 12 17 17 C 1.52991 * 109.47126 * 179.44543 * 14 13 12 18 18 C 1.50702 * 109.47232 * 184.99898 * 17 14 13 19 19 H 1.08000 * 120.00009 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00239 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99909 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46794 * 89.99574 * 22 20 18 24 24 H 1.48490 * 109.47149 * 209.99792 * 22 20 18 25 25 H 1.48500 * 109.47107 * 330.00081 * 22 20 18 26 26 H 1.08999 * 109.47419 * 240.00415 * 1 2 3 27 27 H 1.09004 * 109.46943 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47257 * 120.00330 * 1 2 3 29 29 H 0.97003 * 120.00256 * 0.02562 * 4 2 1 30 30 H 1.08996 * 109.47442 * 294.54675 * 5 4 2 31 31 H 1.09001 * 109.47039 * 54.55399 * 5 4 2 32 32 H 1.08994 * 109.50533 * 299.13475 * 8 6 5 33 33 H 1.09001 * 109.50326 * 59.25552 * 8 6 5 34 34 H 1.09006 * 109.52166 * 182.42820 * 9 8 6 35 35 H 1.08997 * 109.58300 * 62.27060 * 9 8 6 36 36 H 1.09001 * 109.50207 * 297.72013 * 10 9 8 37 37 H 1.09004 * 109.53718 * 177.62191 * 10 9 8 38 38 H 1.09007 * 109.46487 * 180.80127 * 11 10 9 39 39 H 1.09001 * 109.45342 * 60.83417 * 11 10 9 40 40 H 1.08999 * 109.46949 * 33.72837 * 13 12 6 41 41 H 1.08999 * 109.47093 * 153.72935 * 13 12 6 42 42 H 1.09001 * 109.47194 * 64.77604 * 16 14 13 43 43 H 1.09002 * 109.47128 * 184.77017 * 16 14 13 44 44 H 1.08994 * 109.47417 * 304.77336 * 16 14 13 45 45 H 1.09000 * 109.47383 * 305.00128 * 17 14 13 46 46 H 1.09000 * 109.47060 * 65.00344 * 17 14 13 47 47 H 0.96998 * 119.99929 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 -0.0056 6 6 4.1564 -2.6029 0.1335 7 1 5.2455 -2.6068 0.0902 8 6 3.6973 -3.1797 1.4745 9 6 4.1935 -4.6228 1.6006 10 6 3.6607 -5.4420 0.4219 11 6 4.1206 -4.7997 -0.8888 12 7 3.6202 -3.4211 -0.9618 13 6 3.9248 -2.8189 -2.2666 14 6 2.8403 -1.8005 -2.6240 15 1 2.8020 -1.0264 -1.8574 16 6 1.4851 -2.5059 -2.7046 17 6 3.1648 -1.1633 -3.9765 18 6 2.1656 -0.0745 -4.2715 19 1 1.3781 0.1417 -3.5648 20 6 2.2567 0.6458 -5.4437 21 7 3.2160 0.3829 -6.3042 22 14 1.0177 1.9949 -5.8098 23 1 1.5166 3.2850 -5.2693 24 1 0.8327 2.1119 -7.2784 25 1 -0.2811 1.6604 -5.1722 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 1.6958 -2.0073 0.0005 30 1 4.0053 -0.7431 -0.9431 31 1 4.0127 -0.5689 0.8284 32 1 4.1080 -2.5814 2.2877 33 1 2.6085 -3.1635 1.5240 34 1 3.8323 -5.0518 2.5353 35 1 5.2834 -4.6365 1.5908 36 1 2.5714 -5.4614 0.4550 37 1 4.0448 -6.4604 0.4825 38 1 3.7311 -5.3726 -1.7304 39 1 5.2100 -4.7932 -0.9272 40 1 4.8918 -2.3181 -2.2188 41 1 3.9565 -3.5982 -3.0280 42 1 1.2146 -2.8868 -1.7197 43 1 0.7269 -1.7989 -3.0414 44 1 1.5481 -3.3345 -3.4098 45 1 4.1678 -0.7376 -3.9463 46 1 3.1158 -1.9226 -4.7570 47 1 3.2803 0.8898 -7.1286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602734910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:21 Heat of formation + Delta-G solvation = -44.122198 kcal Electronic energy + Delta-G solvation = -24504.631470 eV Core-core repulsion = 21300.884073 eV Total energy + Delta-G solvation = -3203.747397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17659 -38.53547 -35.67288 -34.33771 -32.97189 -31.57314 -31.30010 -29.33916 -26.99289 -26.18206 -25.69051 -23.41579 -22.38401 -21.29447 -20.45447 -19.32011 -19.06840 -16.63781 -16.40520 -15.87137 -15.60099 -15.17566 -14.71406 -14.45264 -14.25302 -14.12448 -13.75293 -13.25577 -13.10844 -12.95480 -12.54818 -12.50604 -12.24033 -12.06735 -11.92236 -11.63925 -11.43219 -11.23055 -11.19833 -10.92128 -10.79704 -10.63686 -10.44324 -10.43845 -10.19630 -10.18461 -9.48302 -9.35488 -8.94950 -8.92010 -8.54709 -8.23912 -8.06917 -5.90347 -3.90232 3.10447 3.39493 3.45331 3.48156 3.62225 4.03548 4.55582 4.68289 4.71299 4.82554 5.11156 5.18156 5.25082 5.31716 5.46044 5.50576 5.52187 5.56726 5.60925 5.65641 5.73242 5.81777 5.84219 5.91569 5.93449 6.02279 6.04772 6.13697 6.17988 6.22456 6.28813 6.40850 6.56035 6.74915 6.82236 7.07482 7.17158 7.26827 7.36993 7.44363 7.77232 7.92873 7.95549 8.10200 8.54642 8.68092 9.15451 9.72882 11.21316 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.005748 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.239924 B = 4869.968855 C = 5806.631192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.549 6.549 4 N -0.711 5.711 5 C 0.117 3.883 6 C 0.075 3.925 7 H 0.051 0.949 8 C -0.110 4.110 9 C -0.120 4.120 10 C -0.116 4.116 11 C 0.056 3.944 12 N -0.530 5.530 13 C 0.059 3.941 14 C -0.105 4.105 15 H 0.089 0.911 16 C -0.116 4.116 17 C 0.028 3.972 18 C -0.503 4.503 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.406 0.594 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.009 0.991 46 H 0.011 0.989 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -11.593 16.202 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.298 3.702 3 O -0.426 6.426 4 N -0.365 5.365 5 C -0.007 4.007 6 C -0.034 4.034 7 H 0.069 0.931 8 C -0.148 4.148 9 C -0.158 4.158 10 C -0.154 4.154 11 C -0.072 4.072 12 N -0.256 5.256 13 C -0.068 4.068 14 C -0.123 4.123 15 H 0.107 0.893 16 C -0.173 4.173 17 C -0.009 4.009 18 C -0.542 4.542 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.539 5.539 22 Si 0.715 3.285 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.243 0.757 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.027 0.973 46 H 0.029 0.971 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.803 -10.812 16.088 19.400 hybrid contribution 0.142 0.314 -0.622 0.711 sum -0.661 -10.498 15.466 18.704 Atomic orbital electron populations 1.21902 0.92380 1.05167 1.03929 1.20641 0.90428 0.83561 0.75616 1.90714 1.70797 1.31551 1.49573 1.45975 1.06835 1.08887 1.74833 1.21571 0.81056 0.95166 1.02940 1.21906 0.97087 0.92496 0.91926 0.93115 1.21621 1.01770 0.95638 0.95775 1.21573 1.00316 0.95624 0.98250 1.21587 1.01648 0.98039 0.94106 1.22094 0.97112 0.89907 0.98047 1.61989 1.59277 1.01318 1.02972 1.22372 0.98203 0.97897 0.88359 1.21816 0.93104 0.96218 1.01190 0.89278 1.21541 0.97882 0.99177 0.98725 1.19098 0.96461 0.95042 0.90340 1.21167 1.12687 1.16929 1.03402 0.92803 1.24991 0.95676 0.97316 0.96498 1.69966 1.32462 1.41258 1.10198 0.86671 0.81926 0.82783 0.77112 1.20716 1.21442 1.19934 0.90138 0.89372 0.89084 0.75706 0.89766 0.91598 0.91696 0.91089 0.92071 0.92452 0.91141 0.92002 0.90735 0.95380 0.94872 0.91807 0.94461 0.92922 0.94741 0.97303 0.97065 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.32 36.01 0.37 -1.82 16 2 C 0.51 8.43 7.36 -10.98 -0.08 8.35 16 3 O -0.55 -11.69 17.08 5.56 0.10 -11.60 16 4 N -0.71 -10.05 3.00 -60.29 -0.18 -10.23 16 5 C 0.12 1.70 4.32 -4.04 -0.02 1.68 16 6 C 0.07 0.90 1.92 -67.72 -0.13 0.77 16 7 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 8 C -0.11 -1.06 5.23 -26.65 -0.14 -1.20 16 9 C -0.12 -1.03 6.00 -26.61 -0.16 -1.19 16 10 C -0.12 -1.04 6.09 -26.65 -0.16 -1.21 16 11 C 0.06 0.63 5.36 -3.84 -0.02 0.60 16 12 N -0.53 -6.83 3.29 -226.69 -0.75 -7.58 16 13 C 0.06 0.97 4.09 -3.82 -0.02 0.95 16 14 C -0.10 -2.06 1.55 -90.63 -0.14 -2.20 16 15 H 0.09 1.80 2.81 -51.92 -0.15 1.66 16 16 C -0.12 -2.10 8.55 37.16 0.32 -1.78 16 17 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 18 C -0.50 -14.32 8.34 -34.44 -0.29 -14.61 16 19 H 0.05 1.51 7.08 -52.49 -0.37 1.14 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 22 Si 0.89 22.48 29.54 -169.99 -5.02 17.45 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.41 5.05 5.85 -40.82 -0.24 4.81 16 30 H 0.08 1.52 5.42 -51.93 -0.28 1.24 16 31 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.69 7.11 -51.93 -0.37 0.32 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.03 0.57 7.60 -51.93 -0.39 0.18 16 41 H 0.06 1.07 7.62 -51.93 -0.40 0.67 16 42 H 0.04 0.56 6.29 -51.93 -0.33 0.23 16 43 H 0.05 1.05 6.83 -51.93 -0.35 0.70 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -32.70 353.32 -8.82 -41.52 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.34 Total: 1.48 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.69 Total: -9.53 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.19 Total: -44.66 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.70 -8.82 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602734910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.600 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds