Wall clock time and date at job start Tue Mar 31 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46998 * 2 1 4 4 O 1.42894 * 109.47213 * 239.99481 * 2 1 3 5 5 C 1.53002 * 109.46807 * 119.99672 * 2 1 3 6 6 N 1.46908 * 109.46610 * 186.87191 * 5 2 1 7 7 C 1.46953 * 111.00104 * 47.27390 * 6 5 2 8 8 C 1.53050 * 109.36339 * 176.81183 * 7 6 5 9 9 N 1.46954 * 109.36739 * 58.39883 * 8 7 6 10 10 C 1.46897 * 111.00352 * 176.81222 * 9 8 7 11 11 C 1.52997 * 109.47126 * 287.96381 * 10 9 8 12 12 C 1.50701 * 115.56100 * 147.52945 * 11 10 9 13 13 H 1.08010 * 120.00029 * 139.87621 * 12 11 10 14 14 C 1.37873 * 120.00243 * 319.87434 * 12 11 10 15 15 N 1.31513 * 120.00000 * 348.85370 * 14 12 11 16 16 Si 1.86807 * 119.99925 * 168.84996 * 14 12 11 17 17 H 1.48494 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46933 * 120.00548 * 16 14 12 19 19 H 1.48504 * 109.47059 * 240.00353 * 16 14 12 20 20 C 1.53004 * 117.50033 * 1.84809 * 11 10 9 21 21 C 1.53001 * 117.50333 * 293.22094 * 11 10 9 22 22 C 1.46955 * 110.87936 * 300.68409 * 9 8 7 23 23 H 1.08999 * 109.48653 * 299.32477 * 22 9 8 24 24 C 1.53000 * 109.48880 * 179.28783 * 22 9 8 25 25 C 1.46955 * 110.99648 * 283.46875 * 6 5 2 26 26 H 1.08996 * 109.46701 * 300.00477 * 1 2 3 27 27 H 1.08999 * 109.46963 * 60.00268 * 1 2 3 28 28 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 29 29 H 0.96702 * 114.00438 * 300.00209 * 4 2 1 30 30 H 1.08998 * 109.47163 * 66.87347 * 5 2 1 31 31 H 1.08998 * 109.47480 * 306.86810 * 5 2 1 32 32 H 1.08998 * 109.48808 * 296.77611 * 7 6 5 33 33 H 1.08998 * 109.49098 * 56.84326 * 7 6 5 34 34 H 1.08998 * 109.49236 * 298.43093 * 8 7 6 35 35 H 1.08999 * 109.48916 * 178.36599 * 8 7 6 36 36 H 1.08999 * 109.47562 * 167.96552 * 10 9 8 37 37 H 1.08999 * 109.47276 * 47.96463 * 10 9 8 38 38 H 0.97002 * 120.00008 * 185.00415 * 15 14 12 39 39 H 1.08999 * 117.49683 * 359.97438 * 20 11 10 40 40 H 1.08994 * 117.50521 * 145.02206 * 20 11 10 41 41 H 1.08997 * 117.50059 * 214.97771 * 21 11 10 42 42 H 1.09007 * 117.49311 * 0.02562 * 21 11 10 43 43 H 1.08997 * 109.47593 * 59.99598 * 24 22 9 44 44 H 1.08999 * 109.47409 * 179.97438 * 24 22 9 45 45 H 1.08995 * 109.47130 * 299.99398 * 24 22 9 46 46 H 1.09006 * 109.48872 * 63.22975 * 25 6 5 47 47 H 1.08994 * 109.50959 * 303.17051 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.4997 -0.5793 1.3350 7 6 3.9072 0.8152 1.1138 8 6 5.4228 0.9349 1.2896 9 7 6.0959 0.0359 0.3418 10 6 7.5555 0.1777 0.4275 11 6 7.9746 1.5162 -0.1839 12 6 9.1811 2.1674 0.4418 13 1 9.9148 2.6568 -0.1817 14 6 9.3483 2.1386 1.8100 15 7 8.3620 1.7429 2.5848 16 14 10.9758 2.6615 2.5633 17 1 11.9150 3.0606 1.4845 18 1 10.7522 3.8120 3.4752 19 1 11.5537 1.5279 3.3290 20 6 6.8658 2.4340 -0.7026 21 6 7.7746 1.6986 -1.6897 22 6 5.6883 -1.3585 0.5630 23 1 5.9626 -1.6616 1.5734 24 6 6.3928 -2.2631 -0.4501 25 6 4.1727 -1.4784 0.3872 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7211 -1.5953 -1.2328 30 1 1.7805 -1.7782 1.1900 31 1 1.5798 -0.2832 2.1350 32 1 3.6333 1.1181 0.1032 33 1 3.4053 1.4596 1.8356 34 1 5.6938 0.6581 2.3084 35 1 5.7311 1.9626 1.0975 36 1 8.0324 -0.6362 -0.1185 37 1 7.8632 0.1434 1.4726 38 1 8.4536 1.7912 3.5493 39 1 5.8378 2.0841 -0.6087 40 1 7.0090 3.5088 -0.5915 41 1 8.5156 2.2897 -2.2279 42 1 7.3440 0.8652 -2.2448 43 1 7.4722 -2.1761 -0.3260 44 1 6.0907 -3.2973 -0.2856 45 1 6.1178 -1.9603 -1.4604 46 1 3.9018 -1.2015 -0.6317 47 1 3.8644 -2.5061 0.5789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:58 Heat of formation + Delta-G solvation = 1.291643 kcal Electronic energy + Delta-G solvation = -24496.975679 eV Core-core repulsion = 21295.197574 eV Total energy + Delta-G solvation = -3201.778105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.61024 -37.80585 -36.01777 -34.09567 -32.11576 -31.53590 -31.21476 -28.07978 -26.57708 -25.75099 -24.56615 -22.70156 -22.52937 -21.01048 -20.43477 -19.14751 -18.39096 -16.58211 -16.15575 -15.98801 -15.08755 -14.79669 -14.68543 -14.58206 -14.45656 -14.24223 -13.65950 -12.92949 -12.64347 -12.58227 -12.34222 -12.23567 -12.03807 -11.73692 -11.49602 -11.38654 -11.07273 -11.04308 -10.96962 -10.92904 -10.78161 -10.51962 -10.25504 -10.24074 -10.11222 -9.81382 -9.70651 -8.99572 -8.92563 -8.49955 -7.90698 -7.74870 -7.16110 -5.95580 -4.01739 3.27755 3.37198 3.41663 4.16731 4.31942 4.40352 4.67566 4.82168 5.02148 5.03553 5.12641 5.23966 5.41600 5.52808 5.63543 5.68094 5.73864 5.77131 5.85030 5.86849 5.95201 6.02405 6.05637 6.14762 6.26392 6.39236 6.46336 6.52355 6.63924 6.66087 6.80600 6.90724 6.96325 7.00985 7.20754 7.25821 7.34368 7.43364 7.51312 7.57192 7.64773 7.66921 8.00159 8.19322 8.27895 8.64253 8.95772 9.56005 11.01365 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.004806 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.033195 B = 5824.991406 C = 5921.442419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.060 3.940 3 H 0.105 0.895 4 O -0.553 6.553 5 C 0.025 3.975 6 N -0.533 5.533 7 C 0.050 3.950 8 C 0.067 3.933 9 N -0.528 5.528 10 C 0.077 3.923 11 C 0.056 3.944 12 C -0.486 4.486 13 H 0.058 0.942 14 C 0.069 3.931 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.197 4.197 21 C -0.206 4.206 22 C 0.082 3.918 23 H 0.035 0.965 24 C -0.143 4.143 25 C 0.055 3.945 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.368 0.632 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.259 0.741 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -6.875 -2.424 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.000 4.000 3 H 0.123 0.877 4 O -0.358 6.358 5 C -0.104 4.104 6 N -0.256 5.256 7 C -0.078 4.078 8 C -0.061 4.061 9 N -0.253 5.253 10 C -0.050 4.050 11 C 0.055 3.945 12 C -0.524 4.524 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.513 5.513 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.235 4.235 21 C -0.243 4.243 22 C -0.027 4.027 23 H 0.053 0.947 24 C -0.201 4.201 25 C -0.073 4.073 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.215 0.785 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.302 -6.386 -2.312 14.936 hybrid contribution 0.417 -0.142 0.629 0.768 sum -12.885 -6.528 -1.683 14.542 Atomic orbital electron populations 1.22457 0.96712 1.02198 1.02614 1.22796 0.92909 0.98333 0.85947 0.87699 1.86677 1.76454 1.28607 1.44075 1.22900 0.89767 1.00527 0.97246 1.62428 1.04346 1.07343 1.51441 1.22375 0.97739 0.88226 0.99453 1.22153 0.89737 0.99511 0.94706 1.62229 1.09154 1.03212 1.50688 1.21899 0.84026 0.95674 1.03351 1.18932 0.94195 0.92583 0.88754 1.20688 1.05598 1.34596 0.91482 0.92337 1.24951 0.96325 0.94865 0.97141 1.69868 1.30605 1.46888 1.03974 0.86585 0.84422 0.78104 0.79189 1.19807 1.21161 1.20959 1.23080 0.96663 0.96938 1.06830 1.22774 1.03783 1.02865 0.94887 1.21514 0.93440 0.90638 0.97113 0.94684 1.21860 1.01015 0.97598 0.99645 1.22387 0.93708 0.95073 0.96094 0.91644 0.92040 0.92549 0.78496 0.91125 0.90247 0.93768 0.91647 0.94106 0.88230 0.93684 0.89215 0.93074 0.89537 0.91926 0.91788 0.91437 0.91911 0.93382 0.92272 0.91387 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.53 37.16 0.35 -1.17 16 2 C 0.06 0.66 3.05 -26.73 -0.08 0.58 16 3 H 0.11 1.34 5.95 -51.93 -0.31 1.03 16 4 O -0.55 -6.68 10.59 -35.23 -0.37 -7.05 16 5 C 0.02 0.28 5.29 -3.82 -0.02 0.26 16 6 N -0.53 -8.07 4.92 -234.47 -1.15 -9.22 16 7 C 0.05 0.84 4.71 -3.77 -0.02 0.82 16 8 C 0.07 1.38 4.46 -3.77 -0.02 1.36 16 9 N -0.53 -10.78 3.59 -226.50 -0.81 -11.59 16 10 C 0.08 1.81 4.65 -3.83 -0.02 1.79 16 11 C 0.06 1.40 2.09 -155.66 -0.33 1.08 16 12 C -0.49 -13.25 9.01 -34.44 -0.31 -13.56 16 13 H 0.06 1.62 7.84 -52.48 -0.41 1.21 16 14 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 15 N -0.88 -23.60 10.92 55.43 0.61 -22.99 16 16 Si 0.89 20.84 29.56 -169.99 -5.02 15.82 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.20 -4.64 7.95 -26.73 -0.21 -4.85 16 21 C -0.21 -4.73 9.94 -26.73 -0.27 -5.00 16 22 C 0.08 1.47 2.56 -67.66 -0.17 1.30 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.14 -2.28 8.93 37.16 0.33 -1.95 16 25 C 0.06 0.84 4.48 -3.77 -0.02 0.83 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.37 3.11 9.05 45.56 0.41 3.53 16 30 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.77 6.27 -51.93 -0.33 0.45 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 2.29 5.26 -51.93 -0.27 2.01 16 36 H 0.04 1.03 5.50 -51.93 -0.29 0.74 16 37 H 0.09 2.37 5.22 -51.93 -0.27 2.10 16 38 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 39 H 0.09 1.97 5.39 -51.93 -0.28 1.69 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.06 1.07 6.04 -51.93 -0.31 0.75 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.07 1.09 5.70 -51.93 -0.30 0.79 16 47 H 0.06 0.79 8.02 -51.93 -0.42 0.38 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -28.02 346.84 -9.78 -37.80 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.39 Total: 8.79 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.86 Total: -16.76 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -1.36 Total: -43.81 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.37 Total: -7.05 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.02 -9.78 -37.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.092 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds