Wall clock time and date at job start Tue Mar 31 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47595 * 2 1 4 4 O 1.42898 * 109.47218 * 120.00338 * 2 1 3 5 5 C 1.53006 * 109.47272 * 240.00300 * 2 1 3 6 6 N 1.46900 * 109.47228 * 174.67373 * 5 2 1 7 7 C 1.46955 * 110.99884 * 164.03951 * 6 5 2 8 8 C 1.53053 * 109.36528 * 183.18723 * 7 6 5 9 9 N 1.46959 * 109.35923 * 301.59927 * 8 7 6 10 10 C 1.46900 * 110.99491 * 183.18589 * 9 8 7 11 11 C 1.52998 * 109.47146 * 63.86054 * 10 9 8 12 12 C 1.50699 * 115.55278 * 55.10498 * 11 10 9 13 13 H 1.08004 * 120.00137 * 249.85919 * 12 11 10 14 14 C 1.37878 * 120.00129 * 69.85487 * 12 11 10 15 15 N 1.31514 * 119.99851 * 189.65765 * 14 12 11 16 16 Si 1.86790 * 119.99897 * 9.66087 * 14 12 11 17 17 H 1.48501 * 109.47212 * 272.16386 * 16 14 12 18 18 H 1.48501 * 109.47240 * 32.16458 * 16 14 12 19 19 H 1.48500 * 109.47385 * 152.16346 * 16 14 12 20 20 C 1.52998 * 117.52152 * 200.80690 * 11 10 9 21 21 C 1.52994 * 60.00364 * 107.47827 * 20 11 10 22 22 C 1.46955 * 110.88307 * 59.32130 * 9 8 7 23 23 H 1.09004 * 109.48960 * 60.64296 * 22 9 8 24 24 C 1.53002 * 109.48880 * 180.70974 * 22 9 8 25 25 C 1.46951 * 110.99459 * 287.83560 * 6 5 2 26 26 H 1.08998 * 109.47134 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47048 * 299.99901 * 1 2 3 28 28 H 1.09006 * 109.46973 * 60.00085 * 1 2 3 29 29 H 0.96700 * 113.99929 * 59.99783 * 4 2 1 30 30 H 1.09001 * 109.47388 * 54.66675 * 5 2 1 31 31 H 1.09011 * 109.46468 * 294.67264 * 5 2 1 32 32 H 1.08995 * 109.49091 * 63.21861 * 7 6 5 33 33 H 1.09004 * 109.48617 * 303.15249 * 7 6 5 34 34 H 1.08997 * 109.48848 * 181.62931 * 8 7 6 35 35 H 1.08994 * 109.48418 * 61.56417 * 8 7 6 36 36 H 1.08998 * 109.47825 * 303.85723 * 10 9 8 37 37 H 1.08996 * 109.47131 * 183.85536 * 10 9 8 38 38 H 0.97001 * 120.00063 * 179.97438 * 15 14 12 39 39 H 1.09007 * 117.50340 * 214.97177 * 20 11 10 40 40 H 1.09010 * 117.49745 * 359.97438 * 20 11 10 41 41 H 1.08998 * 117.50403 * 252.51140 * 21 20 11 42 42 H 1.08999 * 117.50023 * 107.48969 * 21 20 11 43 43 H 1.09000 * 109.46911 * 54.66089 * 24 22 9 44 44 H 1.08998 * 109.47037 * 174.66300 * 24 22 9 45 45 H 1.09001 * 109.46922 * 294.66346 * 24 22 9 46 46 H 1.08994 * 109.49419 * 296.77530 * 25 6 5 47 47 H 1.09002 * 109.49339 * 56.82826 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5034 -0.6109 -1.3153 7 6 4.0628 -1.5853 -2.2625 8 6 5.5904 -1.4926 -2.2430 9 7 6.0000 -0.1257 -2.5945 10 6 7.4634 -0.0154 -2.6605 11 6 7.9916 -0.9049 -3.7877 12 6 7.3928 -0.6551 -5.1478 13 1 6.7330 -1.3868 -5.5901 14 6 7.6872 0.5078 -5.8277 15 7 7.0241 0.8163 -6.9207 16 14 9.0279 1.6448 -5.1963 17 1 8.4467 2.6016 -4.2206 18 1 10.0858 0.8418 -4.5320 19 1 9.6173 2.3951 -6.3342 20 6 9.4626 -1.3215 -3.7292 21 6 8.3653 -2.3459 -3.4342 22 6 5.4406 0.8487 -1.6473 23 1 5.8054 0.6308 -0.6435 24 6 5.8716 2.2598 -2.0525 25 6 3.9130 0.7559 -1.6668 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 -1.5953 1.2328 30 1 1.6008 -0.2655 -2.1368 31 1 1.7566 -1.7728 -1.2028 32 1 3.6980 -1.3675 -3.2662 33 1 3.7558 -2.5905 -1.9738 34 1 6.0065 -2.1943 -2.9659 35 1 5.9568 -1.7370 -1.2460 36 1 7.8951 -0.3356 -1.7123 37 1 7.7412 1.0205 -2.8548 38 1 7.2309 1.6345 -7.3988 39 1 9.9974 -1.4147 -4.6745 40 1 10.0546 -0.9613 -2.8877 41 1 8.2352 -2.6601 -2.3986 42 1 8.1779 -3.1132 -4.1854 43 1 5.5884 2.4425 -3.0891 44 1 5.3806 2.9888 -1.4078 45 1 6.9526 2.3532 -1.9493 46 1 3.5466 1.0004 -2.6638 47 1 3.4966 1.4577 -0.9441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:00 Heat of formation + Delta-G solvation = -8.952311 kcal Electronic energy + Delta-G solvation = -24107.261915 eV Core-core repulsion = 20905.039598 eV Total energy + Delta-G solvation = -3202.222316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.44085 -37.84930 -36.56431 -34.44666 -32.02158 -31.86268 -31.19109 -28.37912 -26.68291 -25.91717 -24.79739 -23.21676 -21.88029 -21.20253 -21.11242 -19.19409 -18.81931 -16.59074 -16.33688 -15.91131 -15.47054 -15.17374 -14.66702 -14.58032 -14.27892 -14.18050 -13.62002 -13.31141 -13.27534 -12.70862 -12.55071 -12.48579 -12.28307 -12.03891 -11.86000 -11.57376 -11.41640 -11.23876 -11.04589 -10.95723 -10.61137 -10.56784 -10.54951 -10.45393 -10.19754 -9.98185 -9.81224 -9.36046 -8.90013 -8.46227 -8.28064 -8.09442 -7.42882 -5.95871 -3.91461 3.35319 3.45485 3.51729 3.91591 4.42289 4.44556 4.55316 4.66617 4.99326 5.02787 5.06054 5.21150 5.25240 5.34912 5.46599 5.49015 5.58264 5.63253 5.69257 5.72841 5.81860 5.84943 5.91408 5.96491 5.98019 6.04838 6.08506 6.22251 6.23889 6.30090 6.31328 6.46841 6.50775 6.52845 6.70298 6.73843 6.81197 7.15429 7.18212 7.21236 7.26163 7.65381 7.79811 7.92254 7.99962 8.65693 9.07067 9.69764 11.17023 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.004901 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.869215 B = 5711.734436 C = 6009.810537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.096 0.904 4 O -0.551 6.551 5 C 0.023 3.977 6 N -0.532 5.532 7 C 0.059 3.941 8 C 0.066 3.934 9 N -0.503 5.503 10 C 0.092 3.908 11 C 0.008 3.992 12 C -0.454 4.454 13 H 0.072 0.928 14 C 0.082 3.918 15 N -0.901 5.901 16 Si 0.860 3.140 17 H -0.279 1.279 18 H -0.251 1.251 19 H -0.297 1.297 20 C -0.194 4.194 21 C -0.189 4.189 22 C 0.085 3.915 23 H 0.037 0.963 24 C -0.147 4.147 25 C 0.065 3.935 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.369 0.631 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.025 0.975 36 H 0.007 0.993 37 H 0.070 0.930 38 H 0.260 0.740 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.265 -1.843 13.046 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.047 3.953 3 H 0.114 0.886 4 O -0.356 6.356 5 C -0.106 4.106 6 N -0.256 5.256 7 C -0.069 4.069 8 C -0.063 4.063 9 N -0.227 5.227 10 C -0.036 4.036 11 C 0.007 3.993 12 C -0.492 4.492 13 H 0.090 0.910 14 C -0.119 4.119 15 N -0.539 5.539 16 Si 0.688 3.312 17 H -0.205 1.205 18 H -0.175 1.175 19 H -0.223 1.223 20 C -0.232 4.232 21 C -0.226 4.226 22 C -0.024 4.024 23 H 0.055 0.945 24 C -0.205 4.205 25 C -0.063 4.063 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.215 0.785 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.011 -1.125 12.996 15.854 hybrid contribution 0.419 0.209 0.018 0.469 sum -8.592 -0.916 13.014 15.621 Atomic orbital electron populations 1.22496 0.96645 1.02454 1.02699 1.21896 0.91752 0.96961 0.84645 0.88592 1.86616 1.77350 1.28431 1.43166 1.22839 0.89117 1.00955 0.97668 1.62129 1.08112 1.05253 1.50086 1.22198 0.95641 0.94843 0.94251 1.22102 0.93487 0.91826 0.98859 1.61935 1.10330 1.03156 1.47288 1.21845 0.86250 1.00404 0.95085 1.19434 0.92390 0.91521 0.95999 1.20027 1.27353 1.04623 0.97168 0.90974 1.24786 0.95640 0.96798 0.94650 1.69925 1.40280 1.24938 1.18782 0.87147 0.84254 0.81379 0.78414 1.20521 1.17476 1.22347 1.23043 0.93465 1.05714 1.00971 1.22853 1.06083 0.94385 0.99298 1.21571 0.93622 0.93249 0.94006 0.94468 1.21875 1.01145 0.94903 1.02552 1.22197 0.95375 0.89492 0.99235 0.92358 0.91767 0.91643 0.78472 0.93948 0.90827 0.93650 0.91216 0.88918 0.95683 0.97523 0.91214 0.93005 0.89594 0.91658 0.91402 0.89860 0.91155 0.92881 0.92596 0.93778 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.53 37.16 0.35 -1.11 16 2 C 0.11 1.11 3.64 -26.73 -0.10 1.01 16 3 H 0.10 1.09 6.54 -51.93 -0.34 0.75 16 4 O -0.55 -6.36 13.29 -35.23 -0.47 -6.83 16 5 C 0.02 0.26 4.61 -3.82 -0.02 0.25 16 6 N -0.53 -7.75 4.62 -234.46 -1.08 -8.83 16 7 C 0.06 0.92 5.58 -3.77 -0.02 0.90 16 8 C 0.07 1.18 5.22 -3.76 -0.02 1.16 16 9 N -0.50 -10.09 4.24 -226.49 -0.96 -11.05 16 10 C 0.09 1.95 4.33 -3.83 -0.02 1.93 16 11 C 0.01 0.18 0.35 -155.66 -0.05 0.12 16 12 C -0.45 -12.40 9.06 -34.44 -0.31 -12.72 16 13 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 15 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 16 Si 0.86 21.30 25.45 -169.99 -4.33 16.97 16 17 H -0.28 -6.76 6.91 56.52 0.39 -6.37 16 18 H -0.25 -5.86 5.46 56.52 0.31 -5.55 16 19 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 20 C -0.19 -4.11 7.46 -26.74 -0.20 -4.31 16 21 C -0.19 -3.80 8.14 -26.73 -0.22 -4.02 16 22 C 0.08 1.48 2.56 -67.65 -0.17 1.31 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.15 -2.50 8.70 37.16 0.32 -2.18 16 25 C 0.07 1.01 4.72 -3.77 -0.02 0.99 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.37 2.95 9.05 45.56 0.41 3.36 16 30 H 0.04 0.50 8.05 -51.93 -0.42 0.08 16 31 H 0.07 0.75 7.91 -51.92 -0.41 0.34 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.95 8.02 -51.93 -0.42 0.54 16 34 H 0.09 1.79 5.88 -51.93 -0.31 1.49 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.14 8.09 -51.93 -0.42 -0.28 16 37 H 0.07 1.56 3.62 -51.93 -0.19 1.37 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.09 1.89 8.07 -51.93 -0.42 1.47 16 40 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.98 6.50 -51.93 -0.34 0.65 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -30.62 352.72 -9.23 -39.85 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.92 Total: 5.58 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.57 Total: -14.42 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -1.27 Total: -46.47 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.47 Total: -6.83 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.33 Total: 16.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.62 -9.23 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.897 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds