Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47347 * 2 1 4 4 O 1.42899 * 109.46955 * 239.99150 * 2 1 3 5 5 C 1.53007 * 109.47066 * 119.99738 * 2 1 3 6 6 N 1.46894 * 109.46912 * 186.55716 * 5 2 1 7 7 C 1.46960 * 111.00124 * 283.48343 * 6 5 2 8 8 C 1.53048 * 109.36499 * 183.19050 * 7 6 5 9 9 N 1.46966 * 109.36485 * 301.59853 * 8 7 6 10 10 C 1.46898 * 110.99901 * 183.18772 * 9 8 7 11 11 C 1.53004 * 109.46803 * 64.64007 * 10 9 8 12 12 C 1.50702 * 115.55035 * 55.05820 * 11 10 9 13 13 H 1.07999 * 120.00098 * 249.89145 * 12 11 10 14 14 C 1.37880 * 120.00044 * 69.87853 * 12 11 10 15 15 N 1.31512 * 119.99738 * 189.50568 * 14 12 11 16 16 Si 1.86796 * 120.00020 * 9.51807 * 14 12 11 17 17 H 1.48498 * 109.47190 * 269.87928 * 16 14 12 18 18 H 1.48499 * 109.47059 * 29.87627 * 16 14 12 19 19 H 1.48506 * 109.47314 * 149.87766 * 16 14 12 20 20 C 1.53001 * 117.51941 * 200.74958 * 11 10 9 21 21 C 1.52994 * 117.50413 * 269.38268 * 11 10 9 22 22 C 1.46953 * 110.87553 * 59.32224 * 9 8 7 23 23 H 1.09003 * 109.49170 * 60.65132 * 22 9 8 24 24 C 1.53005 * 109.48852 * 180.70903 * 22 9 8 25 25 C 1.46961 * 111.00417 * 47.28665 * 6 5 2 26 26 H 1.08997 * 109.47159 * 300.00434 * 1 2 3 27 27 H 1.08996 * 109.47216 * 60.00371 * 1 2 3 28 28 H 1.09005 * 109.47452 * 180.02562 * 1 2 3 29 29 H 0.96694 * 114.00414 * 300.00515 * 4 2 1 30 30 H 1.08998 * 109.47079 * 66.55633 * 5 2 1 31 31 H 1.09001 * 109.46706 * 306.55792 * 5 2 1 32 32 H 1.09000 * 109.48441 * 63.22311 * 7 6 5 33 33 H 1.08995 * 109.48890 * 303.15797 * 7 6 5 34 34 H 1.09007 * 109.48850 * 181.63517 * 8 7 6 35 35 H 1.08994 * 109.48807 * 61.56954 * 8 7 6 36 36 H 1.08998 * 109.47380 * 304.64629 * 10 9 8 37 37 H 1.08994 * 109.47210 * 184.64296 * 10 9 8 38 38 H 0.97007 * 119.99661 * 180.02562 * 15 14 12 39 39 H 1.08996 * 117.50278 * 214.97912 * 20 11 10 40 40 H 1.09008 * 117.49560 * 0.02562 * 20 11 10 41 41 H 1.09005 * 117.49820 * 359.97438 * 21 11 10 42 42 H 1.08994 * 117.49987 * 144.99742 * 21 11 10 43 43 H 1.09004 * 109.46556 * 55.55025 * 24 22 9 44 44 H 1.08997 * 109.47499 * 175.55373 * 24 22 9 45 45 H 1.09004 * 109.46884 * 295.56103 * 24 22 9 46 46 H 1.08996 * 109.48408 * 296.77658 * 25 6 5 47 47 H 1.09001 * 109.48421 * 56.82224 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5004 -0.5857 1.3310 7 6 4.1670 -1.4893 0.3829 8 6 5.6836 -1.3760 0.5546 9 7 6.0968 0.0164 0.3300 10 6 7.5572 0.1518 0.4117 11 6 8.2072 -0.6403 -0.7246 12 6 7.7322 -0.2947 -2.1124 13 1 7.1319 -0.9993 -2.6688 14 6 8.0637 0.9212 -2.6717 15 7 7.5008 1.3025 -3.7975 16 14 9.3125 2.0268 -1.8306 17 1 8.6131 2.9352 -0.8868 18 1 10.2881 1.1928 -1.0836 19 1 10.0292 2.8312 -2.8526 20 6 9.6752 -1.0385 -0.5592 21 6 8.5776 -2.0986 -0.4475 22 6 5.4302 0.9198 1.2782 23 1 5.7026 0.6434 2.2968 24 6 5.8687 2.3601 1.0052 25 6 3.9136 0.8066 1.1065 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7209 -1.5953 -1.2328 30 1 1.7756 -1.7771 1.1926 31 1 1.5840 -0.2795 2.1354 32 1 3.8946 -1.2128 -0.6357 33 1 3.8547 -2.5153 0.5774 34 1 6.1807 -2.0238 -0.1676 35 1 5.9588 -1.6786 1.5648 36 1 7.9050 -0.2352 1.3695 37 1 7.8301 1.2034 0.3240 38 1 7.7344 2.1577 -4.1912 39 1 10.2973 -1.0505 -1.4541 40 1 10.1781 -0.7365 0.3595 41 1 8.3587 -2.4937 0.5445 42 1 8.4777 -2.8080 -1.2689 43 1 5.6669 2.6100 -0.0364 44 1 5.3153 3.0377 1.6553 45 1 6.9363 2.4583 1.2021 46 1 3.6384 1.1091 0.0962 47 1 3.4162 1.4544 1.8284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = -3.360736 kcal Electronic energy + Delta-G solvation = -24538.135456 eV Core-core repulsion = 21336.155609 eV Total energy + Delta-G solvation = -3201.979848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66487 -37.88337 -36.34441 -34.25974 -32.00115 -31.84337 -31.12103 -28.30655 -26.65800 -25.83962 -24.67347 -23.24199 -21.98370 -21.30381 -21.03534 -19.03069 -18.78122 -16.59527 -16.26922 -15.88124 -15.27627 -14.96157 -14.82707 -14.68558 -14.32303 -14.10637 -13.59608 -13.31463 -12.80327 -12.75546 -12.49469 -12.45658 -12.18540 -11.94482 -11.72964 -11.52099 -11.27524 -11.22996 -10.99404 -10.89577 -10.75677 -10.57188 -10.46293 -10.44132 -10.12664 -9.97896 -9.86943 -9.31785 -8.85648 -8.42316 -8.23371 -7.86517 -7.36048 -5.90254 -3.85715 3.38122 3.48236 3.54561 4.13248 4.36235 4.48041 4.59417 4.69657 5.04024 5.05866 5.07730 5.20733 5.30733 5.40079 5.52968 5.56888 5.59768 5.72255 5.74285 5.78547 5.92355 5.92937 5.95149 5.97225 6.06219 6.10960 6.14350 6.25376 6.27735 6.35604 6.40127 6.54650 6.55795 6.63184 6.75654 6.77870 6.84348 7.19619 7.21498 7.25236 7.32279 7.68420 7.85205 7.97503 8.05170 8.71189 9.13288 9.74953 11.22589 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.005770 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.027896 B = 4851.457175 C = 5066.323433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.060 3.940 3 H 0.103 0.897 4 O -0.548 6.548 5 C 0.025 3.975 6 N -0.535 5.535 7 C 0.044 3.956 8 C 0.066 3.934 9 N -0.499 5.499 10 C 0.092 3.908 11 C 0.009 3.991 12 C -0.453 4.453 13 H 0.073 0.927 14 C 0.082 3.918 15 N -0.900 5.900 16 Si 0.858 3.142 17 H -0.280 1.280 18 H -0.250 1.250 19 H -0.297 1.297 20 C -0.194 4.194 21 C -0.189 4.189 22 C 0.085 3.915 23 H 0.033 0.967 24 C -0.147 4.147 25 C 0.059 3.941 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.369 0.631 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.019 0.981 36 H 0.005 0.995 37 H 0.069 0.931 38 H 0.260 0.740 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.505 -2.888 11.494 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.000 4.000 3 H 0.121 0.879 4 O -0.353 6.353 5 C -0.104 4.104 6 N -0.258 5.258 7 C -0.084 4.084 8 C -0.063 4.063 9 N -0.223 5.223 10 C -0.036 4.036 11 C 0.008 3.992 12 C -0.490 4.490 13 H 0.091 0.909 14 C -0.119 4.119 15 N -0.538 5.538 16 Si 0.686 3.314 17 H -0.207 1.207 18 H -0.174 1.174 19 H -0.224 1.224 20 C -0.232 4.232 21 C -0.226 4.226 22 C -0.024 4.024 23 H 0.051 0.949 24 C -0.205 4.205 25 C -0.069 4.069 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.037 0.963 36 H 0.023 0.977 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.229 -2.166 11.252 15.360 hybrid contribution 0.359 0.218 0.629 0.757 sum -9.869 -1.947 11.881 15.568 Atomic orbital electron populations 1.22461 0.96725 1.02245 1.02565 1.22760 0.92923 0.98268 0.86073 0.87889 1.86754 1.76242 1.28640 1.43623 1.22893 0.89365 1.00819 0.97315 1.62466 1.04834 1.06836 1.51674 1.22455 0.94119 0.95043 0.96756 1.22112 0.94270 0.90987 0.98885 1.61905 1.06649 1.04682 1.49097 1.21846 0.86636 1.00305 0.94793 1.19434 0.91898 0.91918 0.95982 1.20027 1.31595 1.02063 0.95323 0.90909 1.24789 0.95623 0.96891 0.94604 1.69935 1.42273 1.21395 1.20164 0.87164 0.83379 0.81183 0.79626 1.20654 1.17392 1.22362 1.23038 0.93773 1.05693 1.00694 1.22848 1.06050 0.93833 0.99890 1.21566 0.93292 0.93726 0.93836 0.94866 1.21882 1.00928 0.94827 1.02860 1.22234 0.95088 0.89028 1.00513 0.91811 0.91922 0.92497 0.78401 0.90881 0.90362 0.90390 0.91914 0.89086 0.96272 0.97675 0.91309 0.93068 0.89624 0.91720 0.91478 0.89865 0.91091 0.92972 0.92616 0.92553 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.53 37.16 0.35 -1.26 16 2 C 0.06 0.69 3.04 -26.73 -0.08 0.61 16 3 H 0.10 1.35 5.97 -51.93 -0.31 1.04 16 4 O -0.55 -7.58 10.58 -35.23 -0.37 -7.95 16 5 C 0.03 0.28 5.29 -3.82 -0.02 0.26 16 6 N -0.54 -7.74 4.92 -234.47 -1.15 -8.89 16 7 C 0.04 0.70 5.20 -3.77 -0.02 0.68 16 8 C 0.07 1.21 5.24 -3.76 -0.02 1.19 16 9 N -0.50 -10.17 4.23 -226.49 -0.96 -11.13 16 10 C 0.09 1.98 4.34 -3.82 -0.02 1.96 16 11 C 0.01 0.21 0.38 -155.66 -0.06 0.15 16 12 C -0.45 -12.58 9.05 -34.44 -0.31 -12.89 16 13 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 14 C 0.08 2.36 5.47 -17.82 -0.10 2.27 16 15 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 16 Si 0.86 21.54 25.43 -169.99 -4.32 17.22 16 17 H -0.28 -6.90 7.00 56.52 0.40 -6.50 16 18 H -0.25 -5.90 5.39 56.52 0.30 -5.59 16 19 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 20 C -0.19 -4.17 7.42 -26.73 -0.20 -4.36 16 21 C -0.19 -3.86 8.15 -26.73 -0.22 -4.07 16 22 C 0.08 1.49 2.56 -67.66 -0.17 1.32 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 C -0.15 -2.54 8.74 37.16 0.32 -2.21 16 25 C 0.06 0.92 3.99 -3.77 -0.02 0.91 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.37 3.72 9.04 45.56 0.41 4.13 16 30 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.42 5.69 -51.93 -0.30 1.12 16 33 H 0.06 0.87 8.02 -51.93 -0.42 0.46 16 34 H 0.09 1.80 5.90 -51.93 -0.31 1.50 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.01 0.11 8.08 -51.93 -0.42 -0.31 16 37 H 0.07 1.56 3.62 -51.93 -0.19 1.37 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.09 1.91 8.10 -51.93 -0.42 1.49 16 40 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.99 6.43 -51.93 -0.33 0.66 16 46 H 0.06 0.99 6.28 -51.93 -0.33 0.67 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -31.22 346.14 -9.12 -40.34 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.75 Total: 7.66 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.55 Total: -15.45 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -1.34 Total: -47.03 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.37 Total: -7.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.32 Total: 17.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.22 -9.12 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.979 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds