Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47347 * 2 1 4 4 O 1.42899 * 109.46955 * 239.99150 * 2 1 3 5 5 C 1.53007 * 109.47066 * 119.99738 * 2 1 3 6 6 N 1.46894 * 109.46912 * 186.55716 * 5 2 1 7 7 C 1.46960 * 111.00124 * 283.48343 * 6 5 2 8 8 C 1.53048 * 109.36499 * 183.19050 * 7 6 5 9 9 N 1.46966 * 109.36485 * 301.59853 * 8 7 6 10 10 C 1.46898 * 110.99901 * 183.18772 * 9 8 7 11 11 C 1.53004 * 109.46803 * 64.64007 * 10 9 8 12 12 C 1.50702 * 115.55035 * 55.05820 * 11 10 9 13 13 H 1.07999 * 120.00098 * 249.89145 * 12 11 10 14 14 C 1.37880 * 120.00044 * 69.87853 * 12 11 10 15 15 N 1.31512 * 119.99738 * 189.50568 * 14 12 11 16 16 Si 1.86796 * 120.00020 * 9.51807 * 14 12 11 17 17 H 1.48498 * 109.47190 * 269.87928 * 16 14 12 18 18 H 1.48499 * 109.47059 * 29.87627 * 16 14 12 19 19 H 1.48506 * 109.47314 * 149.87766 * 16 14 12 20 20 C 1.53001 * 117.51941 * 200.74958 * 11 10 9 21 21 C 1.52994 * 117.50413 * 269.38268 * 11 10 9 22 22 C 1.46953 * 110.87553 * 59.32224 * 9 8 7 23 23 H 1.09003 * 109.49170 * 60.65132 * 22 9 8 24 24 C 1.53005 * 109.48852 * 180.70903 * 22 9 8 25 25 C 1.46961 * 111.00417 * 47.28665 * 6 5 2 26 26 H 1.08997 * 109.47159 * 300.00434 * 1 2 3 27 27 H 1.08996 * 109.47216 * 60.00371 * 1 2 3 28 28 H 1.09005 * 109.47452 * 180.02562 * 1 2 3 29 29 H 0.96694 * 114.00414 * 300.00515 * 4 2 1 30 30 H 1.08998 * 109.47079 * 66.55633 * 5 2 1 31 31 H 1.09001 * 109.46706 * 306.55792 * 5 2 1 32 32 H 1.09000 * 109.48441 * 63.22311 * 7 6 5 33 33 H 1.08995 * 109.48890 * 303.15797 * 7 6 5 34 34 H 1.09007 * 109.48850 * 181.63517 * 8 7 6 35 35 H 1.08994 * 109.48807 * 61.56954 * 8 7 6 36 36 H 1.08998 * 109.47380 * 304.64629 * 10 9 8 37 37 H 1.08994 * 109.47210 * 184.64296 * 10 9 8 38 38 H 0.97007 * 119.99661 * 180.02562 * 15 14 12 39 39 H 1.08996 * 117.50278 * 214.97912 * 20 11 10 40 40 H 1.09008 * 117.49560 * 0.02562 * 20 11 10 41 41 H 1.09005 * 117.49820 * 359.97438 * 21 11 10 42 42 H 1.08994 * 117.49987 * 144.99742 * 21 11 10 43 43 H 1.09004 * 109.46556 * 55.55025 * 24 22 9 44 44 H 1.08997 * 109.47499 * 175.55373 * 24 22 9 45 45 H 1.09004 * 109.46884 * 295.56103 * 24 22 9 46 46 H 1.08996 * 109.48408 * 296.77658 * 25 6 5 47 47 H 1.09001 * 109.48421 * 56.82224 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5004 -0.5857 1.3310 7 6 4.1670 -1.4893 0.3829 8 6 5.6836 -1.3760 0.5546 9 7 6.0968 0.0164 0.3300 10 6 7.5572 0.1518 0.4117 11 6 8.2072 -0.6403 -0.7246 12 6 7.7322 -0.2947 -2.1124 13 1 7.1319 -0.9993 -2.6688 14 6 8.0637 0.9212 -2.6717 15 7 7.5008 1.3025 -3.7975 16 14 9.3125 2.0268 -1.8306 17 1 8.6131 2.9352 -0.8868 18 1 10.2881 1.1928 -1.0836 19 1 10.0292 2.8312 -2.8526 20 6 9.6752 -1.0385 -0.5592 21 6 8.5776 -2.0986 -0.4475 22 6 5.4302 0.9198 1.2782 23 1 5.7026 0.6434 2.2968 24 6 5.8687 2.3601 1.0052 25 6 3.9136 0.8066 1.1065 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7209 -1.5953 -1.2328 30 1 1.7756 -1.7771 1.1926 31 1 1.5840 -0.2795 2.1354 32 1 3.8946 -1.2128 -0.6357 33 1 3.8547 -2.5153 0.5774 34 1 6.1807 -2.0238 -0.1676 35 1 5.9588 -1.6786 1.5648 36 1 7.9050 -0.2352 1.3695 37 1 7.8301 1.2034 0.3240 38 1 7.7344 2.1577 -4.1912 39 1 10.2973 -1.0505 -1.4541 40 1 10.1781 -0.7365 0.3595 41 1 8.3587 -2.4937 0.5445 42 1 8.4777 -2.8080 -1.2689 43 1 5.6669 2.6100 -0.0364 44 1 5.3153 3.0377 1.6553 45 1 6.9363 2.4583 1.2021 46 1 3.6384 1.1091 0.0962 47 1 3.4162 1.4544 1.8284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602809652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = -28.009754 kcal Electronic energy + Delta-G solvation = -24539.204318 eV Core-core repulsion = 21336.155609 eV Total energy + Delta-G solvation = -3203.048709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92079 -39.25544 -37.79125 -35.53807 -34.11273 -33.25767 -32.14902 -29.61502 -27.99040 -27.69377 -26.11727 -24.57992 -23.41713 -22.67011 -22.27283 -20.71277 -20.35853 -18.23040 -17.60216 -17.06998 -16.76661 -16.55498 -16.02696 -15.85518 -15.80473 -15.57913 -15.07172 -14.75416 -14.72049 -14.15388 -13.95983 -13.64903 -13.35564 -13.20470 -12.96971 -12.91248 -12.76767 -12.60922 -12.45791 -12.24020 -12.15733 -12.12192 -12.06561 -11.80712 -11.61422 -11.42292 -11.24723 -11.17925 -10.77606 -10.41451 -10.13759 -9.04926 -8.83085 -8.14467 -6.13068 1.37114 1.41922 1.54013 2.47421 2.94320 3.02196 3.23634 3.44549 3.49959 3.81620 3.94624 4.09237 4.14581 4.21431 4.23947 4.26085 4.37674 4.43441 4.49726 4.53679 4.57913 4.60955 4.64188 4.72835 4.79145 4.86226 4.89300 4.90517 4.94995 4.97832 5.06969 5.11727 5.18203 5.19090 5.24583 5.29408 5.36956 5.49662 5.53805 5.83035 6.07373 6.14365 6.39111 6.52711 6.53761 6.86484 6.88683 7.51020 9.02403 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.005770 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.027896 B = 4851.457175 C = 5066.323433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.059 3.941 3 H 0.081 0.919 4 O -0.579 6.579 5 C 0.028 3.972 6 N -0.533 5.533 7 C 0.052 3.948 8 C 0.068 3.932 9 N -0.529 5.529 10 C 0.100 3.900 11 C -0.018 4.018 12 C -0.442 4.442 13 H 0.021 0.979 14 C 0.024 3.976 15 N -0.954 5.954 16 Si 0.918 3.082 17 H -0.273 1.273 18 H -0.221 1.221 19 H -0.305 1.305 20 C -0.187 4.187 21 C -0.167 4.167 22 C 0.084 3.916 23 H 0.045 0.955 24 C -0.142 4.142 25 C 0.067 3.933 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.382 0.618 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.055 0.945 38 H 0.258 0.742 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.027 0.973 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.741 -3.386 15.096 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 H 0.099 0.901 4 O -0.386 6.386 5 C -0.100 4.100 6 N -0.255 5.255 7 C -0.076 4.076 8 C -0.060 4.060 9 N -0.254 5.254 10 C -0.028 4.028 11 C -0.019 4.019 12 C -0.480 4.480 13 H 0.039 0.961 14 C -0.171 4.171 15 N -0.596 5.596 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.143 1.143 19 H -0.232 1.232 20 C -0.225 4.225 21 C -0.204 4.204 22 C -0.025 4.025 23 H 0.062 0.938 24 C -0.200 4.200 25 C -0.062 4.062 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.231 0.769 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.473 -2.696 14.884 18.398 hybrid contribution 0.338 0.277 -0.543 0.697 sum -10.135 -2.419 14.342 17.727 Atomic orbital electron populations 1.22359 0.94389 1.03408 1.02876 1.22760 0.94680 0.96986 0.85621 0.90123 1.86723 1.77059 1.29917 1.44944 1.22997 0.87124 1.02108 0.97752 1.62491 1.06856 1.05707 1.50483 1.22320 0.92901 0.96689 0.95720 1.22057 0.95665 0.89657 0.98576 1.61857 1.06324 1.06221 1.51032 1.21658 0.87452 0.99078 0.94626 1.19324 0.93743 0.94755 0.94068 1.20114 1.29832 1.00705 0.97306 0.96061 1.25579 0.97681 0.98684 0.95203 1.70104 1.44758 1.22140 1.22554 0.86205 0.81314 0.79467 0.78618 1.19912 1.14339 1.23211 1.23061 0.92609 1.05360 1.01480 1.22838 1.04216 0.92282 1.01086 1.21658 0.94272 0.93026 0.93548 0.93766 1.21850 1.01038 0.95743 1.01402 1.22153 0.94036 0.90307 0.99662 0.90096 0.92999 0.90888 0.76872 0.89128 0.88167 0.93278 0.89531 0.91305 0.95178 0.95597 0.92670 0.93375 0.90751 0.88928 0.88582 0.90715 0.94529 0.89523 0.93306 0.95513 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.53 71.98 0.69 -2.02 16 2 C 0.06 1.31 3.04 30.60 0.09 1.40 16 3 H 0.08 2.13 5.97 -2.39 -0.01 2.11 16 4 O -0.58 -16.27 10.58 -148.98 -1.58 -17.84 16 5 C 0.03 0.55 5.29 86.31 0.46 1.01 16 6 N -0.53 -14.23 4.92 -895.72 -4.40 -18.64 16 7 C 0.05 1.60 5.20 86.31 0.45 2.05 16 8 C 0.07 2.45 5.24 86.31 0.45 2.90 16 9 N -0.53 -21.35 4.23 -870.48 -3.69 -25.03 16 10 C 0.10 4.14 4.34 86.30 0.37 4.52 16 11 C -0.02 -0.81 0.38 -52.93 -0.02 -0.83 16 12 C -0.44 -25.46 9.05 25.60 0.23 -25.23 16 13 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 14 C 0.02 1.46 5.47 84.66 0.46 1.92 16 15 N -0.95 -61.99 13.96 21.45 0.30 -61.69 16 16 Si 0.92 45.08 25.43 68.60 1.74 46.82 16 17 H -0.27 -13.01 7.00 99.48 0.70 -12.31 16 18 H -0.22 -9.69 5.39 99.48 0.54 -9.15 16 19 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 20 C -0.19 -7.57 7.42 30.60 0.23 -7.35 16 21 C -0.17 -6.52 8.15 30.59 0.25 -6.27 16 22 C 0.08 2.81 2.56 44.92 0.12 2.93 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 C -0.14 -4.78 8.74 71.98 0.63 -4.15 16 25 C 0.07 1.98 3.99 86.31 0.34 2.33 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.38 7.68 9.04 -74.06 -0.67 7.01 16 30 H 0.09 1.49 7.90 -2.39 -0.02 1.47 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.83 5.69 -2.39 -0.01 1.82 16 33 H 0.09 2.23 8.02 -2.39 -0.02 2.21 16 34 H 0.07 2.72 5.90 -2.38 -0.01 2.71 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.03 0.97 8.08 -2.39 -0.02 0.95 16 37 H 0.06 2.42 3.62 -2.39 -0.01 2.41 16 38 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 39 H 0.07 3.18 8.10 -2.39 -0.02 3.16 16 40 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 41 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 45 H 0.05 1.68 6.43 -2.38 -0.02 1.66 16 46 H 0.03 0.96 6.28 -2.39 -0.01 0.95 16 47 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -71.35 346.14 -2.78 -74.14 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.09 Total: 29.04 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.75 Total: -26.79 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -7.79 Total: -105.36 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.58 Total: -17.84 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.74 Total: 46.82 kcal Total: -71.35 -2.78 -74.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.127 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds