Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47262 * 2 1 4 4 C 1.50695 * 109.47092 * 120.00525 * 2 1 3 5 5 O 1.21277 * 120.00473 * 111.17912 * 4 2 1 6 6 N 1.34788 * 119.99641 * 291.18126 * 4 2 1 7 7 C 1.46502 * 119.99629 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47188 * 60.00008 * 7 6 4 9 9 C 1.53002 * 109.46371 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.47056 * 299.99572 * 7 6 4 11 11 N 1.46902 * 109.46850 * 239.99743 * 2 1 3 12 12 C 1.46898 * 111.00404 * 311.29466 * 11 2 1 13 13 C 1.46904 * 110.99864 * 75.24532 * 11 2 1 14 14 C 1.52997 * 109.47315 * 162.40324 * 13 11 2 15 15 C 1.50701 * 115.55159 * 148.04185 * 14 13 11 16 16 H 1.08000 * 120.00140 * 113.97208 * 15 14 13 17 17 C 1.37883 * 119.99614 * 293.97043 * 15 14 13 18 18 N 1.31510 * 120.00256 * 350.88707 * 17 15 14 19 19 Si 1.86798 * 119.99482 * 170.87835 * 17 15 14 20 20 H 1.48497 * 109.47099 * 60.00475 * 19 17 15 21 21 H 1.48509 * 109.46835 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47678 * 300.00013 * 19 17 15 23 23 C 1.53000 * 117.49766 * 2.33298 * 14 13 11 24 24 C 1.52999 * 60.00330 * 252.50904 * 23 14 13 25 25 H 1.09000 * 109.46851 * 300.00551 * 1 2 3 26 26 H 1.09008 * 109.46984 * 59.99719 * 1 2 3 27 27 H 1.08998 * 109.47530 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99715 * 359.97438 * 6 4 2 29 29 H 1.08993 * 109.47266 * 59.99598 * 8 7 6 30 30 H 1.08997 * 109.46559 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.47094 * 299.99495 * 8 7 6 32 32 H 1.08993 * 109.47604 * 60.00051 * 9 7 6 33 33 H 1.09008 * 109.46636 * 179.97438 * 9 7 6 34 34 H 1.08996 * 109.47380 * 299.99361 * 9 7 6 35 35 H 1.08996 * 109.47225 * 60.00505 * 10 7 6 36 36 H 1.09000 * 109.46458 * 180.02562 * 10 7 6 37 37 H 1.08999 * 109.46885 * 300.00071 * 10 7 6 38 38 H 1.09000 * 109.47199 * 61.70769 * 12 11 2 39 39 H 1.09003 * 109.47163 * 181.70507 * 12 11 2 40 40 H 1.09002 * 109.46893 * 301.70876 * 12 11 2 41 41 H 1.08997 * 109.47268 * 282.40948 * 13 11 2 42 42 H 1.09010 * 109.46977 * 42.40587 * 13 11 2 43 43 H 0.96995 * 120.00440 * 185.01082 * 18 17 15 44 44 H 1.08996 * 117.49688 * 359.97438 * 23 14 13 45 45 H 1.09002 * 117.50143 * 145.02100 * 23 14 13 46 46 H 1.09000 * 117.50066 * 252.51207 * 24 23 14 47 47 H 1.08996 * 117.51761 * 107.47559 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5922 -1.7812 1.1263 6 7 1.8593 -0.1559 2.4466 7 6 2.3481 -0.8464 3.6427 8 6 3.8621 -1.0401 3.5368 9 6 2.0271 -0.0085 4.8820 10 6 1.6661 -2.2111 3.7583 11 7 2.0196 -0.6926 -1.1994 12 6 1.3418 -1.9839 -1.3753 13 6 1.8658 0.1496 -2.3933 14 6 2.7561 -0.3885 -3.5152 15 6 2.2298 -0.1918 -4.9135 16 1 2.7495 0.4609 -5.5993 17 6 1.0848 -0.8452 -5.3174 18 7 0.5526 -1.7731 -4.5524 19 14 0.2894 -0.4122 -6.9512 20 1 1.2530 -0.6630 -8.0528 21 1 -0.9202 -1.2505 -7.1504 22 1 -0.0976 1.0215 -6.9489 23 6 3.5554 -1.6622 -3.2333 24 6 4.2708 -0.3122 -3.3132 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.4118 0.7006 2.5298 29 1 4.3479 -0.0680 3.4544 30 1 4.2257 -1.5534 4.4269 31 1 4.0911 -1.6368 2.6538 32 1 0.9486 0.1299 4.9577 33 1 2.3904 -0.5225 5.7720 34 1 2.5133 0.9635 4.7994 35 1 1.8951 -2.8077 2.8754 36 1 2.0295 -2.7245 4.6485 37 1 0.5875 -2.0729 3.8338 38 1 0.2730 -1.8179 -1.5101 39 1 1.7446 -2.4890 -2.2533 40 1 1.5050 -2.6030 -0.4932 41 1 0.8250 0.1349 -2.7166 42 1 2.1582 1.1727 -2.1564 43 1 -0.2097 -2.2833 -4.8677 44 1 3.4473 -2.1166 -2.2485 45 1 3.7007 -2.3584 -4.0594 46 1 4.8867 -0.1201 -4.1918 47 1 4.6330 0.1218 -2.3812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602818125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = -0.117862 kcal Electronic energy + Delta-G solvation = -24056.332842 eV Core-core repulsion = 20854.493616 eV Total energy + Delta-G solvation = -3201.839226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13007 -37.90303 -36.28666 -34.80868 -32.16801 -31.86363 -29.42381 -27.50270 -27.25312 -26.91686 -25.45307 -24.80771 -22.30633 -20.78238 -19.95325 -19.34702 -18.50210 -16.85574 -15.97169 -15.82984 -15.07237 -14.77215 -14.54166 -14.27162 -13.97717 -13.74629 -13.50092 -13.20984 -13.14514 -12.50943 -12.39227 -12.28752 -12.11202 -12.02201 -11.66514 -11.53128 -11.37107 -11.14567 -11.05359 -10.89841 -10.88202 -10.81429 -10.67800 -10.53426 -10.24467 -9.74736 -9.28848 -8.93087 -8.86721 -8.81101 -8.32590 -7.82696 -7.30118 -5.97031 -4.01122 3.02186 3.25510 3.32317 3.37143 3.40272 4.42987 4.64042 4.80631 4.83970 4.98221 5.09822 5.29407 5.37555 5.39041 5.43690 5.51665 5.61741 5.68920 5.71046 5.74478 5.83267 5.90470 5.93738 6.00910 6.27245 6.33472 6.35120 6.38969 6.51239 6.61021 6.70607 6.72327 6.78275 6.98177 7.03708 7.15326 7.41281 7.46212 7.63459 7.69242 7.76615 7.91687 8.05476 8.11639 8.60778 8.62802 8.99052 9.61104 11.09133 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.004221 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.551655 B = 6631.127319 C = 6929.271932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 H 0.093 0.907 4 C 0.525 3.475 5 O -0.512 6.512 6 N -0.734 5.734 7 C 0.170 3.830 8 C -0.163 4.163 9 C -0.154 4.154 10 C -0.163 4.163 11 N -0.514 5.514 12 C 0.026 3.974 13 C 0.103 3.897 14 C 0.050 3.950 15 C -0.496 4.496 16 H 0.057 0.943 17 C 0.073 3.927 18 N -0.872 5.872 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.168 4.168 24 C -0.206 4.206 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.395 0.605 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.259 0.741 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 3.789 17.420 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.052 4.052 3 H 0.111 0.889 4 C 0.311 3.689 5 O -0.386 6.386 6 N -0.388 5.388 7 C 0.084 3.916 8 C -0.222 4.222 9 C -0.211 4.211 10 C -0.221 4.221 11 N -0.237 5.237 12 C -0.121 4.121 13 C -0.024 4.024 14 C 0.049 3.951 15 C -0.534 4.534 16 H 0.075 0.925 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.206 4.206 24 C -0.243 4.243 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.135 2.796 17.429 17.652 hybrid contribution -1.590 0.852 -0.944 2.036 sum -1.454 3.648 16.485 16.946 Atomic orbital electron populations 1.22365 0.95916 1.03117 1.02189 1.21657 0.93799 0.98353 0.91361 0.88930 1.20715 0.78403 0.85852 0.83900 1.90588 1.40627 1.21414 1.85943 1.46231 1.62016 1.24625 1.05922 1.20246 0.94363 0.92556 0.84387 1.22220 0.94192 1.02287 1.03453 1.22078 1.01926 1.00086 0.97044 1.22221 0.99834 0.96784 1.03281 1.62043 1.55974 1.04535 1.01123 1.22623 0.95877 0.90623 1.02960 1.21703 0.99857 0.93129 0.87758 1.18779 0.86352 0.96965 0.93026 1.20496 1.08888 1.28121 0.95894 0.92501 1.24940 0.96614 0.94860 0.96588 1.69966 1.23614 1.21010 1.36270 0.86766 0.78884 0.78440 0.84502 1.20401 1.21419 1.20333 1.22873 1.06322 0.90857 1.00524 1.22805 0.97960 1.04094 0.99412 0.92881 0.91231 0.91514 0.77175 0.92907 0.92375 0.89959 0.92148 0.91148 0.92074 0.90098 0.92319 0.92996 0.96292 0.88117 0.92587 0.93370 0.93891 0.93135 0.89284 0.91672 0.91621 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.33 37.16 0.31 -2.25 16 2 C 0.06 0.98 2.70 -68.86 -0.19 0.80 16 3 H 0.09 1.36 7.72 -51.93 -0.40 0.96 16 4 C 0.53 8.14 6.36 -10.98 -0.07 8.07 16 5 O -0.51 -9.64 10.60 5.56 0.06 -9.58 16 6 N -0.73 -8.46 5.11 -47.60 -0.24 -8.70 16 7 C 0.17 1.80 1.06 -131.82 -0.14 1.66 16 8 C -0.16 -1.90 8.40 37.16 0.31 -1.58 16 9 C -0.15 -1.15 8.59 37.16 0.32 -0.83 16 10 C -0.16 -1.85 8.40 37.16 0.31 -1.54 16 11 N -0.51 -10.38 3.44 -236.28 -0.81 -11.20 16 12 C 0.03 0.57 7.36 60.06 0.44 1.01 16 13 C 0.10 2.30 4.52 -3.82 -0.02 2.28 16 14 C 0.05 1.24 1.67 -155.66 -0.26 0.98 16 15 C -0.50 -13.51 8.79 -34.44 -0.30 -13.81 16 16 H 0.06 1.56 7.83 -52.49 -0.41 1.15 16 17 C 0.07 1.97 5.17 -17.82 -0.09 1.88 16 18 N -0.87 -23.73 12.61 55.43 0.70 -23.03 16 19 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.17 -4.13 8.02 -26.73 -0.21 -4.34 16 24 C -0.21 -4.78 9.94 -26.73 -0.27 -5.05 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.09 7.33 -51.92 -0.38 0.71 16 27 H 0.07 1.06 6.35 -51.93 -0.33 0.73 16 28 H 0.39 3.54 8.47 -40.82 -0.35 3.19 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 1.18 6.17 -51.93 -0.32 0.86 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.41 6.30 -51.93 -0.33 0.08 16 39 H 0.10 2.46 5.13 -51.93 -0.27 2.19 16 40 H 0.06 1.18 6.03 -51.93 -0.31 0.87 16 41 H 0.05 1.18 6.82 -51.93 -0.35 0.83 16 42 H 0.04 0.90 7.70 -51.92 -0.40 0.50 16 43 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 44 H 0.09 2.18 5.43 -51.93 -0.28 1.90 16 45 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 46 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 47 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -29.08 357.28 -8.03 -37.11 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.24 Total: 6.90 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 0.15 Total: -12.73 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.36 Total: -42.92 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.06 Total: -9.58 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.08 -8.03 -37.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.989 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds