Wall clock time and date at job start Tue Mar 31 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.50704 * 109.46926 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99947 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99629 * 180.02562 * 14 13 12 17 17 C 1.46494 * 120.00464 * 359.97438 * 16 14 13 18 18 C 1.46505 * 119.99565 * 179.97438 * 16 14 13 19 19 C 1.52998 * 109.47176 * 90.00147 * 18 16 14 20 20 C 1.53001 * 109.46977 * 295.00039 * 19 18 16 21 21 C 1.53007 * 109.46932 * 179.97438 * 20 19 18 22 22 C 1.52991 * 109.47129 * 60.00079 * 21 20 19 23 23 C 1.53001 * 109.47149 * 299.99788 * 22 21 20 24 24 C 1.52994 * 109.47476 * 174.99541 * 19 18 16 25 25 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 26 26 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 27 27 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 28 28 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 29 29 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 30 30 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 31 31 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 32 32 H 1.09003 * 109.47349 * 89.99550 * 17 16 14 33 33 H 1.09001 * 109.47679 * 209.99998 * 17 16 14 34 34 H 1.09004 * 109.47084 * 329.99743 * 17 16 14 35 35 H 1.09003 * 109.47152 * 209.99716 * 18 16 14 36 36 H 1.08994 * 109.47666 * 330.00037 * 18 16 14 37 37 H 1.09007 * 109.47184 * 54.99681 * 19 18 16 38 38 H 1.09000 * 109.47104 * 299.99504 * 20 19 18 39 39 H 1.09004 * 109.47117 * 59.99906 * 20 19 18 40 40 H 1.09000 * 109.46945 * 299.99753 * 21 20 19 41 41 H 1.08998 * 109.46454 * 179.97438 * 21 20 19 42 42 H 1.08996 * 109.47113 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47473 * 59.99998 * 22 21 20 44 44 H 1.09000 * 109.47104 * 300.00436 * 23 22 21 45 45 H 1.08995 * 109.47220 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47378 * 300.00192 * 24 19 18 47 47 H 1.09007 * 109.46800 * 59.99905 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5885 -0.5212 3.5558 15 8 2.8688 -1.6981 3.4701 16 7 2.7286 0.1210 4.7324 17 6 2.3895 1.5424 4.8360 18 6 3.2200 -0.6024 5.9077 19 6 4.7458 -0.5054 5.9652 20 6 5.3487 -1.2321 4.7613 21 6 6.8746 -1.1345 4.8184 22 6 7.3790 -1.7816 6.1097 23 6 6.7761 -1.0549 7.3136 24 6 5.2498 -1.1527 7.2566 25 1 -0.3634 0.4118 -0.9415 26 1 -0.3633 -1.0214 0.1140 27 1 -0.3633 0.6094 0.8274 28 1 2.2478 -1.8381 -3.4691 29 1 2.9173 -1.1203 1.0288 30 1 2.7587 1.0465 2.1182 31 1 1.0870 0.6165 2.5525 32 1 1.3402 1.6465 5.1123 33 1 3.0137 2.0104 5.5973 34 1 2.5623 2.0281 3.8756 35 1 2.7938 -0.1627 6.8095 36 1 2.9249 -1.6494 5.8397 37 1 5.0444 0.5428 5.9437 38 1 5.0503 -2.2802 4.7827 39 1 4.9897 -0.7707 3.8413 40 1 7.1727 -0.0862 4.7967 41 1 7.3041 -1.6526 3.9610 42 1 8.4660 -1.7125 6.1502 43 1 7.0810 -2.8298 6.1314 44 1 7.0742 -0.0067 7.2919 45 1 7.1358 -1.5156 8.2336 46 1 4.8203 -0.6350 8.1142 47 1 4.9513 -2.2009 7.2780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:03 Heat of formation + Delta-G solvation = -57.843889 kcal Electronic energy + Delta-G solvation = -23201.025938 eV Core-core repulsion = 19996.683523 eV Total energy + Delta-G solvation = -3204.342414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10226 -38.32522 -35.92764 -35.31180 -32.60906 -31.87988 -30.82265 -29.71958 -27.22705 -26.55715 -24.98581 -23.93297 -22.63938 -21.45221 -19.83000 -19.66405 -19.02848 -17.58467 -16.64842 -16.20470 -15.99072 -15.26402 -14.52521 -14.42634 -14.29218 -14.18250 -13.81050 -13.53029 -13.34590 -12.90535 -12.73599 -12.47876 -12.41400 -12.25966 -12.15768 -11.86935 -11.73104 -11.69827 -11.26522 -11.21569 -11.05506 -10.95976 -10.59558 -10.41195 -10.32572 -10.10440 -9.98275 -9.71660 -9.40102 -8.88563 -8.57362 -8.22804 -7.51330 -6.46087 -4.06757 2.90798 3.04351 3.36996 3.39365 3.58662 4.47444 4.49276 4.56519 4.62546 4.75352 4.97702 5.04076 5.11368 5.16978 5.20472 5.28359 5.29957 5.35331 5.36636 5.42047 5.49257 5.52843 5.54801 5.69046 5.72947 5.76015 5.81603 5.89440 6.02634 6.04718 6.07139 6.19692 6.31687 6.40851 6.46662 6.57475 6.67509 6.77647 6.89285 7.41317 7.47228 7.73460 8.12082 8.39526 8.41750 8.52644 8.96933 9.62408 10.94285 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.003676 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.141398 B = 7615.643215 C = 8140.055549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.190 3.810 3 H -0.007 1.007 4 C -0.605 4.605 5 H 0.061 0.939 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 1.048 2.952 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.664 5.664 13 C 0.041 3.959 14 C 0.513 3.487 15 O -0.516 6.516 16 N -0.625 5.625 17 C 0.079 3.921 18 C 0.120 3.880 19 C -0.101 4.101 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.269 0.731 29 H 0.346 0.654 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 5.805 23.263 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.081 3.919 3 H 0.010 0.990 4 C -0.643 4.643 5 H 0.080 0.920 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.876 3.124 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.297 5.297 13 C -0.092 4.092 14 C 0.302 3.698 15 O -0.390 6.390 16 N -0.361 5.361 17 C -0.064 4.064 18 C -0.003 4.003 19 C -0.120 4.120 20 C -0.143 4.143 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.150 4.150 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.246 6.049 22.235 23.633 hybrid contribution 1.215 -0.465 0.964 1.619 sum 6.461 5.583 23.200 24.721 Atomic orbital electron populations 1.22146 0.98250 1.00468 0.98749 1.19452 0.92199 0.92212 0.88013 0.98969 1.22086 1.40763 1.10322 0.91103 0.92040 1.25734 0.94662 1.05035 0.92013 1.70839 1.41577 1.10021 1.31420 0.84002 0.77019 0.75269 0.76066 1.21076 1.19979 1.21227 1.60358 1.33957 1.31220 1.04151 1.21907 1.01035 0.94975 0.91246 1.20932 0.77151 0.87740 0.84004 1.90684 1.48544 1.15775 1.83984 1.47906 1.67119 1.10799 1.10273 1.21768 1.00476 0.81142 1.03049 1.21479 0.93238 0.98432 0.87106 1.21562 0.94977 0.99928 0.95571 1.21539 0.94028 1.01231 0.97518 1.21558 0.96451 1.00464 0.97344 1.21537 0.99536 0.99817 0.94816 1.21505 0.95396 1.00548 0.97949 1.21525 0.95622 1.01128 0.96710 0.92821 0.92971 0.96478 0.92121 0.83471 0.93481 0.89065 0.92668 0.91373 0.90852 0.91049 0.89909 0.91461 0.91427 0.91989 0.92512 0.92104 0.92416 0.92022 0.92233 0.92237 0.92168 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.05 37.16 0.34 -2.81 16 2 C 0.19 4.60 2.18 -68.87 -0.15 4.45 16 3 H -0.01 -0.17 6.46 -51.92 -0.34 -0.50 16 4 C -0.60 -17.27 8.83 -34.44 -0.30 -17.57 16 5 H 0.06 1.91 7.92 -52.49 -0.42 1.50 16 6 C 0.03 0.90 5.29 -17.82 -0.09 0.81 16 7 N -0.90 -28.00 13.70 55.43 0.76 -27.24 16 8 Si 1.05 25.05 26.29 -169.99 -4.47 20.59 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -6.02 5.76 56.52 0.33 -5.70 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.66 -14.64 5.93 -109.22 -0.65 -15.29 16 13 C 0.04 0.71 4.52 -4.97 -0.02 0.69 16 14 C 0.51 8.38 6.29 -10.99 -0.07 8.31 16 15 O -0.52 -10.18 14.00 5.55 0.08 -10.10 16 16 N -0.63 -7.62 2.76 -181.57 -0.50 -8.13 16 17 C 0.08 0.69 10.24 59.84 0.61 1.31 16 18 C 0.12 1.29 5.00 -4.04 -0.02 1.27 16 19 C -0.10 -1.02 2.39 -90.62 -0.22 -1.23 16 20 C -0.11 -1.33 3.95 -26.73 -0.11 -1.44 16 21 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 22 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 23 C -0.12 -0.94 5.92 -26.70 -0.16 -1.10 16 24 C -0.11 -0.94 5.21 -26.71 -0.14 -1.08 16 25 H 0.05 1.25 4.88 -51.93 -0.25 1.00 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.02 0.32 7.62 -51.93 -0.40 -0.07 16 28 H 0.27 8.34 8.73 -40.82 -0.36 7.98 16 29 H 0.35 8.05 7.96 -39.29 -0.31 7.74 16 30 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 31 H 0.09 1.45 7.53 -51.93 -0.39 1.06 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 34 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 35 H 0.07 0.59 8.07 -51.93 -0.42 0.18 16 36 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 39 H 0.06 0.94 6.06 -51.93 -0.31 0.63 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -32.08 355.39 -8.72 -40.80 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.65 Total: 5.15 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.65 Total: -11.13 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.39 Total: -50.66 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.47 Total: 20.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.08 -8.72 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.041 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds