Wall clock time and date at job start Tue Mar 31 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46700 * 2 1 4 4 C 1.50689 * 109.47057 * 239.99451 * 2 1 3 5 5 H 1.08006 * 120.00403 * 269.39633 * 4 2 1 6 6 C 1.37885 * 120.00158 * 89.40669 * 4 2 1 7 7 N 1.31508 * 119.99534 * 352.60056 * 6 4 2 8 8 Si 1.86804 * 119.99998 * 172.59943 * 6 4 2 9 9 H 1.48497 * 109.46651 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.46963 * 299.99608 * 8 6 4 11 11 H 1.48495 * 109.46989 * 59.99955 * 8 6 4 12 12 N 1.46899 * 109.46747 * 119.99301 * 2 1 3 13 13 C 1.46902 * 111.00189 * 275.00034 * 12 2 1 14 14 H 1.09002 * 109.46848 * 35.00216 * 13 12 2 15 15 C 1.52994 * 109.47089 * 275.00135 * 13 12 2 16 16 C 1.50701 * 109.47221 * 155.00206 * 13 12 2 17 17 O 1.21288 * 119.99630 * 0.02562 * 16 13 12 18 18 N 1.34769 * 120.00418 * 180.02562 * 16 13 12 19 19 C 1.46502 * 120.00517 * 180.02562 * 18 16 13 20 20 C 1.52998 * 109.47097 * 180.02562 * 19 18 16 21 21 C 1.53005 * 109.46971 * 294.99197 * 20 19 18 22 22 C 1.52997 * 109.47380 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46868 * 59.99978 * 22 21 20 24 24 C 1.52995 * 109.47457 * 299.99935 * 23 22 21 25 25 C 1.52999 * 109.46970 * 174.99798 * 20 19 18 26 26 H 1.09001 * 109.46791 * 180.33348 * 1 2 3 27 27 H 1.08999 * 109.47483 * 300.33599 * 1 2 3 28 28 H 1.09000 * 109.46949 * 60.33642 * 1 2 3 29 29 H 0.96998 * 120.00128 * 354.57360 * 7 6 4 30 30 H 1.00901 * 111.00463 * 38.95867 * 12 2 1 31 31 H 1.08993 * 109.47544 * 299.99832 * 15 13 12 32 32 H 1.09003 * 109.47134 * 60.00499 * 15 13 12 33 33 H 1.09006 * 109.47247 * 180.02562 * 15 13 12 34 34 H 0.97004 * 119.99661 * 0.02562 * 18 16 13 35 35 H 1.09000 * 109.46713 * 299.99515 * 19 18 16 36 36 H 1.08990 * 109.47010 * 59.99128 * 19 18 16 37 37 H 1.08996 * 109.47906 * 54.99559 * 20 19 18 38 38 H 1.08996 * 109.47102 * 300.00855 * 21 20 19 39 39 H 1.08997 * 109.46930 * 60.00201 * 21 20 19 40 40 H 1.08999 * 109.46693 * 300.00471 * 22 21 20 41 41 H 1.08993 * 109.47107 * 180.02562 * 22 21 20 42 42 H 1.09006 * 109.46867 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.46603 * 60.00447 * 23 22 21 44 44 H 1.08996 * 109.47126 * 300.00417 * 24 23 22 45 45 H 1.09002 * 109.47143 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.47340 * 299.99833 * 25 20 19 47 47 H 1.09008 * 109.47340 * 59.99812 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.2217 -1.7734 -1.2007 6 6 2.2505 -0.0036 -2.3939 7 7 1.8847 1.2569 -2.4758 8 14 3.0657 -0.8365 -3.8538 9 1 3.1841 0.1319 -4.9734 10 1 4.4178 -1.3092 -3.4625 11 1 2.2424 -1.9942 -4.2864 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2228 2.3469 14 1 1.2575 0.9332 2.2906 15 6 3.4110 0.9811 2.3224 16 6 1.9785 -0.5673 3.6260 17 8 1.8640 -1.7740 3.5857 18 7 2.0129 0.0670 4.8146 19 6 1.9124 -0.7011 6.0581 20 6 1.9764 0.2523 7.2530 21 6 3.3524 0.9198 7.2998 22 6 3.4166 1.8727 8.4950 23 6 3.1872 1.0861 9.7872 24 6 1.8113 0.4186 9.7405 25 6 1.7468 -0.5338 8.5454 26 1 -0.3633 -1.0277 0.0060 27 1 -0.3634 0.5190 0.8869 28 1 -0.3633 0.5086 -0.8930 29 1 1.3915 1.6671 -1.7482 30 1 1.4496 -1.4978 1.4102 31 1 4.2358 0.2708 2.3787 32 1 3.4861 1.5526 1.3973 33 1 3.4578 1.6599 3.1740 34 1 2.1041 1.0322 4.8468 35 1 0.9662 -1.2419 6.0755 36 1 2.7377 -1.4108 6.1143 37 1 1.2054 1.0159 7.1504 38 1 4.1233 0.1561 7.4023 39 1 3.5160 1.4797 6.3790 40 1 2.6456 2.6362 8.3927 41 1 4.3967 2.3485 8.5280 42 1 3.2334 1.7649 10.6388 43 1 3.9583 0.3225 9.8894 44 1 1.0403 1.1823 9.6382 45 1 1.6481 -0.1421 10.6609 46 1 0.7666 -1.0094 8.5121 47 1 2.5179 -1.2975 8.6481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:15 Heat of formation + Delta-G solvation = -76.033522 kcal Electronic energy + Delta-G solvation = -22701.649051 eV Core-core repulsion = 19496.517875 eV Total energy + Delta-G solvation = -3205.131176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.94904 -38.79332 -36.18107 -34.80950 -33.10478 -31.60899 -31.06499 -30.22607 -27.14088 -26.09390 -24.78059 -23.34645 -22.83218 -21.46954 -20.54149 -20.13762 -19.52597 -17.53185 -16.30668 -16.12236 -15.72437 -15.37350 -14.70965 -14.52096 -14.42289 -14.25139 -13.77407 -13.58881 -13.37428 -12.81340 -12.59605 -12.51133 -12.44107 -12.09866 -11.95877 -11.87689 -11.47174 -11.46060 -11.32550 -11.29211 -11.14661 -10.84878 -10.80242 -10.65468 -10.49772 -10.38710 -10.05151 -9.88513 -9.42576 -9.01265 -8.53599 -8.35340 -7.30709 -6.30486 -3.98484 2.88876 3.25075 3.50059 3.52703 3.70892 4.27848 4.36414 4.39129 4.58408 4.79008 4.88077 4.91035 5.04399 5.05499 5.11126 5.15886 5.17335 5.28881 5.43919 5.45995 5.55594 5.57614 5.63098 5.68301 5.72658 5.79779 5.81741 5.84827 5.92488 5.99161 6.02656 6.13583 6.26431 6.35469 6.47267 6.51084 6.64540 6.74407 6.96925 7.28128 7.54642 7.92831 8.33996 8.40488 8.52338 8.64679 8.94337 9.70123 11.07314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038826 B = 0.002885 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.990687 B = 9702.669857 C = 9902.172748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.195 3.805 3 H 0.041 0.959 4 C -0.569 4.569 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 1.068 2.932 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.289 1.289 12 N -0.660 5.660 13 C 0.066 3.934 14 H 0.057 0.943 15 C -0.130 4.130 16 C 0.514 3.486 17 O -0.532 6.532 18 N -0.734 5.734 19 C 0.124 3.876 20 C -0.098 4.098 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.112 4.112 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.339 0.661 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.398 0.602 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 2.733 24.329 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.087 3.913 3 H 0.059 0.941 4 C -0.608 4.608 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.553 5.553 8 Si 0.897 3.103 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.216 1.216 12 N -0.294 5.294 13 C -0.048 4.048 14 H 0.075 0.925 15 C -0.188 4.188 16 C 0.301 3.699 17 O -0.407 6.407 18 N -0.388 5.388 19 C 0.000 4.000 20 C -0.117 4.117 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.150 4.150 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.980 2.178 22.595 22.786 hybrid contribution -1.592 0.304 1.842 2.453 sum 0.389 2.483 24.437 24.566 Atomic orbital electron populations 1.22628 1.01775 0.99789 0.98752 1.19474 0.88574 0.95191 0.88062 0.94104 1.21806 1.47232 0.96643 0.95123 0.92875 1.25801 0.96318 0.95683 1.00715 1.70811 1.36759 1.12475 1.35241 0.83563 0.76345 0.74979 0.75455 1.20999 1.21390 1.21563 1.60945 1.58922 1.08184 1.01307 1.21500 0.98825 0.95156 0.89304 0.92515 1.21707 0.96254 0.99252 1.01624 1.21080 0.74932 0.88585 0.85305 1.90664 1.48328 1.14534 1.87210 1.46042 1.76377 1.10809 1.05575 1.21350 1.02081 0.94079 0.82482 1.21407 0.98305 0.97808 0.94173 1.21617 0.96628 0.98872 0.98259 1.21535 1.01673 0.97945 0.94579 1.21549 0.97351 0.99405 0.97521 1.21510 0.97419 0.98720 0.97933 1.21497 1.02121 0.97944 0.93442 0.94053 0.96831 0.92789 0.92236 0.84093 0.91793 0.91082 0.93478 0.76707 0.91761 0.91604 0.90566 0.91635 0.91754 0.92003 0.91960 0.92194 0.91991 0.91992 0.91970 0.91665 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 9.04 37.16 0.34 -3.60 16 2 C 0.19 4.91 2.02 -68.87 -0.14 4.77 16 3 H 0.04 1.09 5.93 -51.93 -0.31 0.78 16 4 C -0.57 -16.24 8.63 -34.44 -0.30 -16.53 16 5 H 0.05 1.56 7.83 -52.48 -0.41 1.15 16 6 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 7 N -0.92 -27.39 13.55 55.43 0.75 -26.64 16 8 Si 1.07 25.66 29.91 -169.99 -5.08 20.57 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.66 -15.02 5.92 -102.17 -0.60 -15.62 16 13 C 0.07 1.20 2.84 -68.87 -0.20 1.01 16 14 H 0.06 1.00 7.12 -51.93 -0.37 0.63 16 15 C -0.13 -2.13 9.29 37.15 0.35 -1.79 16 16 C 0.51 8.73 7.18 -10.99 -0.08 8.65 16 17 O -0.53 -11.00 15.65 5.55 0.09 -10.92 16 18 N -0.73 -8.99 5.18 -60.30 -0.31 -9.30 16 19 C 0.12 1.33 5.06 -4.04 -0.02 1.31 16 20 C -0.10 -0.76 2.23 -90.62 -0.20 -0.96 16 21 C -0.12 -0.87 5.08 -26.73 -0.14 -1.00 16 22 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 23 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 24 C -0.12 -0.73 5.92 -26.75 -0.16 -0.89 16 25 C -0.11 -0.78 5.20 -26.75 -0.14 -0.92 16 26 H 0.04 0.94 8.13 -51.93 -0.42 0.52 16 27 H 0.01 0.27 7.43 -51.93 -0.39 -0.12 16 28 H 0.05 1.31 7.73 -51.93 -0.40 0.91 16 29 H 0.27 7.86 6.43 -40.82 -0.26 7.60 16 30 H 0.34 7.92 7.18 -39.29 -0.28 7.64 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.31 7.43 -51.93 -0.39 0.92 16 33 H 0.05 0.58 7.57 -51.93 -0.39 0.18 16 34 H 0.40 3.91 7.07 -40.82 -0.29 3.62 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -32.07 364.17 -9.35 -41.41 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.57 Total: 6.40 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.10 Total: -11.39 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.17 Total: -51.57 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.07 -9.35 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.619 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds