Wall clock time and date at job start Tue Mar 31 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46739 * 2 1 4 4 N 1.46504 * 109.47048 * 119.99713 * 2 1 3 5 5 C 1.34773 * 120.00207 * 297.60776 * 4 2 1 6 6 O 1.21284 * 119.99799 * 5.23644 * 5 4 2 7 7 C 1.50699 * 120.00005 * 185.23703 * 5 4 2 8 8 N 1.46904 * 109.46883 * 185.99144 * 7 5 4 9 9 C 1.46902 * 110.99786 * 180.02562 * 8 7 5 10 10 H 1.09007 * 109.46946 * 325.00789 * 9 8 7 11 11 C 1.53001 * 109.47118 * 85.00225 * 9 8 7 12 12 C 1.50696 * 109.47457 * 205.00714 * 9 8 7 13 13 H 1.08000 * 119.99681 * 354.07057 * 12 9 8 14 14 C 1.37876 * 120.00348 * 174.07573 * 12 9 8 15 15 N 1.31514 * 120.00121 * 159.65946 * 14 12 9 16 16 Si 1.86803 * 119.99848 * 339.93893 * 14 12 9 17 17 H 1.48499 * 109.46950 * 179.72527 * 16 14 12 18 18 H 1.48493 * 109.46835 * 299.72146 * 16 14 12 19 19 H 1.48496 * 109.46958 * 59.72513 * 16 14 12 20 20 C 1.46497 * 119.99765 * 117.60596 * 4 2 1 21 21 C 1.54273 * 110.03256 * 241.78908 * 20 4 2 22 22 C 1.54955 * 104.15980 * 217.13457 * 21 20 4 23 23 C 1.54895 * 102.77854 * 37.89032 * 22 21 20 24 24 C 1.53870 * 110.03177 * 124.57279 * 20 4 2 25 25 H 1.09005 * 109.47255 * 307.27036 * 1 2 3 26 26 H 1.08996 * 109.47365 * 67.27583 * 1 2 3 27 27 H 1.09001 * 109.47248 * 187.27788 * 1 2 3 28 28 H 1.08992 * 109.47149 * 240.00044 * 2 1 3 29 29 H 1.09002 * 109.46982 * 184.14519 * 3 2 1 30 30 H 1.08995 * 109.47452 * 304.13989 * 3 2 1 31 31 H 1.09005 * 109.47410 * 64.14569 * 3 2 1 32 32 H 1.09000 * 109.46905 * 65.99480 * 7 5 4 33 33 H 1.08993 * 109.46960 * 305.99734 * 7 5 4 34 34 H 1.00891 * 111.00631 * 303.95212 * 8 7 5 35 35 H 1.08997 * 109.47052 * 54.03830 * 11 9 8 36 36 H 1.08999 * 109.47156 * 174.04276 * 11 9 8 37 37 H 1.09001 * 109.47121 * 294.04141 * 11 9 8 38 38 H 0.97000 * 120.00055 * 355.21966 * 15 14 12 39 39 H 1.09003 * 110.01489 * 3.18014 * 20 4 2 40 40 H 1.09000 * 110.48407 * 335.78395 * 21 20 4 41 41 H 1.09002 * 110.48038 * 98.42897 * 21 20 4 42 42 H 1.09002 * 110.72333 * 279.57300 * 22 21 20 43 43 H 1.09001 * 110.92384 * 156.29116 * 22 21 20 44 44 H 1.08998 * 110.48883 * 203.40562 * 23 22 21 45 45 H 1.08999 * 110.60020 * 80.81426 * 23 22 21 46 46 H 1.09008 * 110.03226 * 238.56793 * 24 20 4 47 47 H 1.09002 * 110.03301 * 359.97438 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7330 -0.2026 2.4197 6 8 0.9941 0.7522 2.5346 7 6 2.3321 -0.8435 3.6450 8 7 1.7603 -0.2267 4.8494 9 6 2.3228 -0.8274 6.0663 10 1 2.5055 -1.8886 5.8965 11 6 3.6404 -0.1327 6.4158 12 6 1.3497 -0.6611 7.2048 13 1 0.4517 -0.0771 7.0666 14 6 1.6057 -1.2542 8.4228 15 7 1.0102 -0.8107 9.5083 16 14 2.8045 -2.6826 8.5325 17 1 2.9087 -3.1342 9.9433 18 1 2.3175 -3.8033 7.6888 19 1 4.1402 -2.2458 8.0526 20 6 2.8167 -1.9115 1.0625 21 6 2.0858 -3.0964 1.7271 22 6 3.2224 -3.9298 2.3712 23 6 4.1930 -2.8407 2.8918 24 6 4.1561 -1.7491 1.8023 25 1 -0.3634 0.6224 0.8178 26 1 -0.3634 0.3970 -0.9478 27 1 -0.3634 -1.0194 0.1302 28 1 1.8933 -0.5138 -0.8899 29 1 3.1274 1.4434 -0.0743 30 1 1.6173 1.9773 -0.8505 31 1 1.7385 1.9345 0.9248 32 1 3.4123 -0.6976 3.6400 33 1 2.1096 -1.9105 3.6426 34 1 1.8971 0.7729 4.8436 35 1 3.4777 0.9431 6.4815 36 1 4.0041 -0.5043 7.3738 37 1 4.3782 -0.3419 5.6411 38 1 0.4449 -0.0237 9.4643 39 1 2.9957 -2.1267 0.0090 40 1 1.3953 -2.7387 2.4909 41 1 1.5563 -3.6862 0.9788 42 1 3.7103 -4.5577 1.6258 43 1 2.8429 -4.5345 3.1949 44 1 5.2004 -3.2444 2.9933 45 1 3.8455 -2.4408 3.8443 46 1 4.9852 -1.8864 1.1080 47 1 4.2123 -0.7617 2.2605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:51 Heat of formation + Delta-G solvation = -25.962976 kcal Electronic energy + Delta-G solvation = -24406.301069 eV Core-core repulsion = 21203.341115 eV Total energy + Delta-G solvation = -3202.959954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76718 -37.73662 -36.40477 -35.05993 -32.45461 -31.90007 -29.68965 -28.92721 -27.40208 -27.14418 -25.63399 -24.56017 -22.12300 -20.92298 -20.68590 -19.85430 -18.65694 -17.50397 -16.60468 -16.27298 -15.64318 -15.16785 -14.74528 -14.28852 -14.22193 -13.96257 -13.78239 -13.36369 -13.13043 -12.75656 -12.73181 -12.53849 -12.05713 -11.92348 -11.86453 -11.62756 -11.57709 -11.30780 -11.20197 -11.17838 -11.17206 -11.04480 -11.01407 -10.75071 -10.47347 -10.37337 -9.98026 -9.74625 -9.19389 -8.92368 -8.56293 -8.16874 -7.35579 -6.36991 -3.94587 2.90698 3.00847 3.38331 3.43689 3.61365 4.38081 4.47464 4.51771 4.54319 4.83548 5.04213 5.08820 5.12039 5.23487 5.25306 5.28329 5.31704 5.40105 5.43511 5.55342 5.56844 5.59844 5.62022 5.69550 5.79893 5.87650 5.89186 5.91668 6.01049 6.06087 6.12366 6.25204 6.27793 6.31375 6.35216 6.41220 6.61179 6.77562 6.82219 7.21347 7.50335 7.83080 8.32283 8.36580 8.51754 8.54554 9.10581 9.71024 11.00625 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.005540 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.340644 B = 5053.253575 C = 5850.097268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.147 3.853 3 C -0.170 4.170 4 N -0.615 5.615 5 C 0.520 3.480 6 O -0.519 6.519 7 C 0.018 3.982 8 N -0.661 5.661 9 C 0.192 3.808 10 H 0.025 0.975 11 C -0.181 4.181 12 C -0.582 4.582 13 H 0.064 0.936 14 C 0.031 3.969 15 N -0.906 5.906 16 Si 1.037 2.963 17 H -0.285 1.285 18 H -0.284 1.284 19 H -0.278 1.278 20 C 0.141 3.859 21 C -0.148 4.148 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.145 4.145 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.337 0.663 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.018 0.982 38 H 0.269 0.731 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 -4.057 -21.242 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 C -0.228 4.228 4 N -0.350 5.350 5 C 0.309 3.691 6 O -0.394 6.394 7 C -0.114 4.114 8 N -0.292 5.292 9 C 0.083 3.917 10 H 0.042 0.958 11 C -0.240 4.240 12 C -0.621 4.621 13 H 0.082 0.918 14 C -0.174 4.174 15 N -0.540 5.540 16 Si 0.865 3.135 17 H -0.211 1.211 18 H -0.210 1.210 19 H -0.205 1.205 20 C 0.037 3.963 21 C -0.186 4.186 22 C -0.160 4.160 23 C -0.179 4.179 24 C -0.183 4.183 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.080 -5.025 -20.118 21.911 hybrid contribution 0.363 1.398 -1.206 1.882 sum 7.443 -3.627 -21.323 22.874 Atomic orbital electron populations 1.22212 0.94970 1.02592 1.02775 1.20966 0.94656 0.93203 0.86810 1.22204 1.00496 0.96286 1.03779 1.48341 1.54239 1.26681 1.05759 1.20876 0.80513 0.83573 0.84176 1.90609 1.35095 1.27709 1.85957 1.22914 0.97170 1.01123 0.90173 1.60510 1.60378 1.08614 0.99732 1.19520 0.91211 0.93032 0.87961 0.95774 1.22897 0.99385 1.01345 1.00373 1.21941 1.08160 1.36582 0.95388 0.91751 1.25641 0.99351 1.00710 0.91731 1.70823 1.30180 1.24298 1.28728 0.84172 0.76367 0.76844 0.76102 1.21118 1.21026 1.20471 1.21800 0.90228 0.83980 1.00294 1.23057 0.98574 0.96254 1.00702 1.22463 0.95921 0.97360 1.00302 1.22740 0.99975 0.95848 0.99293 1.22796 0.96697 1.00485 0.98301 0.90193 0.92428 0.92818 0.90329 0.93080 0.92057 0.90196 0.92361 0.87622 0.84425 0.93570 0.92232 0.96320 0.92133 0.89149 0.89774 0.91108 0.91355 0.90866 0.91392 0.89962 0.91100 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.04 37.16 0.34 -1.66 16 2 C 0.15 1.64 3.29 -67.93 -0.22 1.42 16 3 C -0.17 -1.94 9.14 37.16 0.34 -1.60 16 4 N -0.61 -7.77 2.39 -157.33 -0.38 -8.15 16 5 C 0.52 8.62 6.12 -10.99 -0.07 8.56 16 6 O -0.52 -10.26 12.46 5.55 0.07 -10.20 16 7 C 0.02 0.31 2.98 -4.97 -0.01 0.30 16 8 N -0.66 -14.48 5.90 -109.22 -0.64 -15.12 16 9 C 0.19 4.56 2.16 -68.87 -0.15 4.41 16 10 H 0.02 0.57 6.40 -51.92 -0.33 0.24 16 11 C -0.18 -3.93 8.87 37.16 0.33 -3.60 16 12 C -0.58 -16.72 9.08 -34.44 -0.31 -17.03 16 13 H 0.06 2.06 8.06 -52.49 -0.42 1.63 16 14 C 0.03 0.89 5.26 -17.82 -0.09 0.79 16 15 N -0.91 -28.13 13.70 55.43 0.76 -27.37 16 16 Si 1.04 24.93 26.36 -169.99 -4.48 20.45 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.12 5.93 56.52 0.34 -5.79 16 20 C 0.14 1.43 3.37 -66.81 -0.23 1.20 16 21 C -0.15 -1.56 5.85 -25.03 -0.15 -1.71 16 22 C -0.12 -1.20 6.77 -24.70 -0.17 -1.37 16 23 C -0.14 -1.51 5.97 -25.07 -0.15 -1.66 16 24 C -0.14 -1.45 5.63 -25.61 -0.14 -1.60 16 25 H 0.08 1.21 6.40 -51.93 -0.33 0.88 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.69 7.57 -51.93 -0.39 0.29 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.17 6.07 -51.93 -0.32 0.85 16 32 H 0.06 0.93 4.01 -51.93 -0.21 0.72 16 33 H 0.11 1.77 3.60 -51.93 -0.19 1.58 16 34 H 0.34 7.51 8.01 -39.30 -0.31 7.19 16 35 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 36 H 0.06 1.35 5.18 -51.93 -0.27 1.09 16 37 H 0.02 0.34 7.61 -51.93 -0.40 -0.06 16 38 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 39 H 0.09 0.72 7.58 -51.93 -0.39 0.33 16 40 H 0.08 1.13 5.40 -51.93 -0.28 0.85 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.09 5.24 -51.93 -0.27 0.82 16 46 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.08 0.90 5.46 -51.93 -0.28 0.62 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -31.80 341.10 -8.06 -39.86 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.84 Total: 8.93 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.69 Total: -13.54 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.26 Total: -50.64 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.48 Total: 20.45 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.80 -8.06 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.898 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds