Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.50707 * 109.47108 * 240.00413 * 2 1 3 5 5 H 1.07990 * 120.00188 * 240.00064 * 4 2 1 6 6 C 1.37881 * 119.99812 * 59.99749 * 4 2 1 7 7 N 1.31513 * 119.99857 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99862 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46860 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47063 * 120.00144 * 8 6 4 11 11 H 1.48495 * 109.46893 * 240.00130 * 8 6 4 12 12 N 1.46898 * 109.47312 * 120.00625 * 2 1 3 13 13 C 1.46900 * 110.99826 * 201.36406 * 12 2 1 14 14 H 1.09001 * 109.47241 * 322.63981 * 13 12 2 15 15 C 1.53001 * 109.47490 * 82.64478 * 13 12 2 16 16 C 1.50702 * 109.47116 * 202.64372 * 13 12 2 17 17 O 1.21285 * 119.99704 * 359.97438 * 16 13 12 18 18 N 1.34770 * 120.00402 * 180.02562 * 16 13 12 19 19 C 1.46504 * 119.99964 * 359.97438 * 18 16 13 20 20 C 1.46494 * 120.00517 * 180.02562 * 18 16 13 21 21 C 1.53004 * 109.47247 * 239.99626 * 20 18 16 22 22 C 1.53003 * 109.47334 * 179.97438 * 21 20 18 23 23 C 1.53003 * 109.46811 * 60.00029 * 22 21 20 24 24 C 1.52996 * 109.47310 * 300.00237 * 23 22 21 25 25 C 1.52996 * 109.47513 * 119.99836 * 20 18 16 26 26 H 1.08995 * 109.47271 * 54.20482 * 1 2 3 27 27 H 1.09001 * 109.46901 * 174.20356 * 1 2 3 28 28 H 1.09003 * 109.46634 * 294.19974 * 1 2 3 29 29 H 0.97005 * 119.99923 * 179.97438 * 7 6 4 30 30 H 1.00903 * 110.99815 * 325.31364 * 12 2 1 31 31 H 1.08992 * 109.47260 * 187.63403 * 15 13 12 32 32 H 1.09001 * 109.46759 * 307.63351 * 15 13 12 33 33 H 1.08997 * 109.47003 * 67.62918 * 15 13 12 34 34 H 1.09005 * 109.47127 * 90.00143 * 19 18 16 35 35 H 1.09001 * 109.47599 * 210.00494 * 19 18 16 36 36 H 1.09001 * 109.47158 * 330.00241 * 19 18 16 37 37 H 1.08999 * 109.47172 * 359.97438 * 20 18 16 38 38 H 1.08994 * 109.47146 * 300.00136 * 21 20 18 39 39 H 1.09007 * 109.46757 * 60.00229 * 21 20 18 40 40 H 1.08998 * 109.46834 * 300.00516 * 22 21 20 41 41 H 1.09002 * 109.47201 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47077 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46683 * 60.00237 * 23 22 21 44 44 H 1.09007 * 109.46840 * 299.99887 * 24 23 22 45 45 H 1.08997 * 109.47241 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46974 * 300.00139 * 25 20 18 47 47 H 1.08995 * 109.47709 * 59.99914 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 3.1454 -2.2874 -3.6040 10 1 1.1660 -1.5863 -4.8162 11 1 3.1465 -0.1870 -4.8166 12 7 2.0197 -0.6926 1.1993 13 6 3.3994 -0.2952 1.5102 14 1 3.9576 -0.1646 0.5832 15 6 3.3877 1.0221 2.2884 16 6 4.0546 -1.3657 2.3445 17 8 3.4332 -2.3613 2.6503 18 7 5.3306 -1.2162 2.7516 19 6 6.0810 -0.0132 2.3826 20 6 5.9677 -2.2570 3.5621 21 6 6.3989 -1.6648 4.9054 22 6 7.0638 -2.7520 5.7521 23 6 8.2910 -3.2928 5.0156 24 6 7.8598 -3.8849 3.6724 25 6 7.1950 -2.7972 2.8255 26 1 -0.3633 0.6010 -0.8335 27 1 -0.3633 -1.0224 -0.1038 28 1 -0.3633 0.4213 0.9374 29 1 0.7086 1.1615 -3.4843 30 1 1.4100 -0.5280 1.9862 31 1 4.4087 1.3864 2.4013 32 1 2.7967 1.7596 1.7454 33 1 2.9493 0.8586 3.2729 34 1 5.9397 0.7517 3.1463 35 1 7.1407 -0.2560 2.3033 36 1 5.7210 0.3598 1.4238 37 1 5.2601 -3.0681 3.7333 38 1 7.1064 -0.8535 4.7344 39 1 5.5245 -1.2800 5.4302 40 1 6.3559 -3.5631 5.9230 41 1 7.3706 -2.3303 6.7093 42 1 8.7649 -4.0670 5.6190 43 1 8.9988 -2.4817 4.8448 44 1 7.1520 -4.6960 3.8433 45 1 8.7342 -4.2697 3.1475 46 1 6.8878 -3.2191 1.8685 47 1 7.9026 -1.9860 2.6545 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = -47.851174 kcal Electronic energy + Delta-G solvation = -23572.790358 eV Core-core repulsion = 20368.881261 eV Total energy + Delta-G solvation = -3203.909098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10738 -38.10867 -35.92801 -34.88433 -32.93036 -30.91010 -30.82392 -29.36532 -27.05044 -26.55931 -25.12564 -23.90933 -22.74769 -21.75867 -20.19050 -19.68326 -18.77946 -16.63964 -16.31927 -16.02226 -15.24705 -14.93104 -14.69228 -14.32418 -14.23079 -14.03278 -13.92818 -13.21056 -12.96707 -12.93132 -12.62188 -12.54116 -12.35007 -12.28782 -11.93979 -11.53468 -11.33446 -11.24674 -11.23987 -10.94058 -10.85058 -10.78994 -10.61374 -10.44222 -10.35911 -10.27402 -10.10866 -9.90781 -9.14090 -8.96251 -8.39690 -8.37982 -7.16781 -5.96654 -3.99420 3.17217 3.20205 3.32122 3.40342 3.46801 4.46427 4.52297 4.63095 4.74572 4.89832 5.08209 5.10808 5.19492 5.25356 5.32552 5.34587 5.35204 5.37597 5.48659 5.51788 5.59122 5.60290 5.66095 5.79854 5.86560 5.88541 5.96111 5.98824 6.07142 6.09207 6.23304 6.26552 6.32123 6.44929 6.77662 6.81964 7.01774 7.07221 7.44470 7.67607 7.77787 7.94840 8.27858 8.36536 8.70944 8.79086 9.09107 9.65839 11.10073 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.004119 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.798036 B = 6796.895420 C = 7390.777633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.663 5.663 13 C 0.079 3.921 14 H 0.108 0.892 15 C -0.186 4.186 16 C 0.522 3.478 17 O -0.522 6.522 18 N -0.621 5.621 19 C 0.077 3.923 20 C 0.141 3.859 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.128 4.128 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.005 0.995 29 H 0.258 0.742 30 H 0.322 0.678 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.556 -1.454 14.361 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.293 5.293 13 C -0.035 4.035 14 H 0.126 0.874 15 C -0.245 4.245 16 C 0.310 3.690 17 O -0.396 6.396 18 N -0.356 5.356 19 C -0.066 4.066 20 C 0.037 3.963 21 C -0.164 4.164 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.167 4.167 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.272 -2.452 14.002 20.143 hybrid contribution 0.230 0.613 -0.622 0.903 sum 14.502 -1.839 13.380 19.817 Atomic orbital electron populations 1.21884 0.97913 1.00758 0.99047 1.19207 0.91789 0.91923 0.86524 0.97954 1.21233 1.30475 1.11934 0.89613 0.92063 1.24941 0.95389 0.95130 0.98970 1.69907 1.37369 1.23258 1.23176 0.86502 0.78628 0.79684 0.82989 1.19785 1.21077 1.21229 1.60341 0.99348 1.62324 1.07279 1.21323 0.94369 0.90028 0.97823 0.87384 1.22685 1.02834 0.98562 1.00424 1.21145 0.80449 0.88250 0.79178 1.90625 1.62880 1.30573 1.55483 1.47951 1.13057 1.20598 1.54042 1.21896 0.96677 0.87165 1.00911 1.20979 0.94581 0.91142 0.89561 1.21864 1.00488 0.98334 0.95672 1.21501 0.97337 0.98506 0.98148 1.21554 0.97575 1.00260 0.96323 1.21504 1.00294 0.98030 0.95650 1.21897 0.97026 0.98551 0.99214 0.89616 0.94365 0.97551 0.93178 0.86076 0.91618 0.91324 0.92989 0.92779 0.91595 0.90412 0.88334 0.91847 0.91777 0.91754 0.91922 0.92090 0.92068 0.91717 0.91847 0.91443 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 37.16 0.33 -3.06 16 2 C 0.21 5.36 2.43 -68.86 -0.17 5.19 16 3 H 0.00 0.08 6.92 -51.93 -0.36 -0.28 16 4 C -0.49 -13.81 8.29 -34.44 -0.29 -14.10 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.56 11.38 55.43 0.63 -24.93 16 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.66 -14.89 5.52 -102.16 -0.56 -15.46 16 13 C 0.08 1.49 2.02 -68.86 -0.14 1.36 16 14 H 0.11 2.20 6.77 -51.93 -0.35 1.85 16 15 C -0.19 -2.84 8.74 37.16 0.32 -2.51 16 16 C 0.52 9.66 7.14 -10.99 -0.08 9.58 16 17 O -0.52 -11.63 15.76 5.55 0.09 -11.54 16 18 N -0.62 -8.79 2.76 -173.93 -0.48 -9.27 16 19 C 0.08 0.84 7.85 59.85 0.47 1.31 16 20 C 0.14 1.77 2.52 -67.93 -0.17 1.60 16 21 C -0.13 -1.26 5.20 -26.73 -0.14 -1.40 16 22 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 23 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 24 C -0.12 -1.05 5.92 -26.71 -0.16 -1.21 16 25 C -0.13 -1.39 5.18 -26.71 -0.14 -1.53 16 26 H 0.09 2.28 6.25 -51.93 -0.32 1.96 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.01 0.12 8.01 -51.93 -0.42 -0.29 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.32 6.84 8.11 -39.29 -0.32 6.52 16 31 H 0.07 0.81 4.77 -51.93 -0.25 0.56 16 32 H 0.07 1.13 7.13 -51.93 -0.37 0.76 16 33 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.05 0.51 7.12 -51.93 -0.37 0.14 16 35 H 0.07 0.59 6.42 -51.93 -0.33 0.26 16 36 H 0.08 0.90 5.92 -51.93 -0.31 0.59 16 37 H 0.10 1.50 6.90 -51.93 -0.36 1.14 16 38 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.62 6.66 -51.93 -0.35 0.28 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -31.25 353.89 -8.85 -40.10 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.27 Total: 4.64 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.56 Total: -5.57 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.41 Total: -49.65 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.25 -8.85 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.755 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds