Wall clock time and date at job start Tue Mar 31 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47367 * 2 1 4 4 N 1.46902 * 109.46737 * 119.99841 * 2 1 3 5 5 C 1.46894 * 111.00184 * 280.43007 * 4 2 1 6 6 H 1.09000 * 109.47103 * 33.50028 * 5 4 2 7 7 C 1.52999 * 109.47474 * 153.50117 * 5 4 2 8 8 C 1.50694 * 109.47303 * 273.50089 * 5 4 2 9 9 H 1.07999 * 120.00133 * 359.97438 * 8 5 4 10 10 C 1.37879 * 120.00273 * 179.97438 * 8 5 4 11 11 N 1.31510 * 119.99980 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 120.00187 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47166 * 89.99473 * 12 10 8 14 14 H 1.48491 * 109.47260 * 210.00012 * 12 10 8 15 15 H 1.48503 * 109.46899 * 329.99741 * 12 10 8 16 16 C 1.50707 * 109.47104 * 239.99309 * 2 1 3 17 17 O 1.21277 * 120.00004 * 239.99912 * 16 2 1 18 18 N 1.34777 * 119.99598 * 60.00730 * 16 2 1 19 19 C 1.46497 * 119.99908 * 359.97438 * 18 16 2 20 20 C 1.46497 * 119.99643 * 179.97438 * 18 16 2 21 21 C 1.52998 * 109.46789 * 120.00087 * 20 18 16 22 22 C 1.53009 * 109.47122 * 179.97438 * 21 20 18 23 23 C 1.53002 * 109.46777 * 299.99987 * 22 21 20 24 24 C 1.52998 * 109.47284 * 60.00113 * 23 22 21 25 25 C 1.52996 * 109.46971 * 239.99636 * 20 18 16 26 26 H 1.08996 * 109.46944 * 291.93483 * 1 2 3 27 27 H 1.08996 * 109.46533 * 51.93125 * 1 2 3 28 28 H 1.08998 * 109.47233 * 171.92635 * 1 2 3 29 29 H 1.00903 * 111.00106 * 156.47669 * 4 2 1 30 30 H 1.09004 * 109.47049 * 301.84408 * 7 5 4 31 31 H 1.09000 * 109.47080 * 61.84116 * 7 5 4 32 32 H 1.08994 * 109.47538 * 181.84467 * 7 5 4 33 33 H 0.96996 * 120.00109 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.47007 * 270.00141 * 19 18 16 35 35 H 1.09002 * 109.47380 * 29.99971 * 19 18 16 36 36 H 1.09005 * 109.46900 * 150.00306 * 19 18 16 37 37 H 1.08992 * 109.47020 * 359.97438 * 20 18 16 38 38 H 1.08997 * 109.47642 * 299.99465 * 21 20 18 39 39 H 1.09002 * 109.47600 * 59.99986 * 21 20 18 40 40 H 1.08998 * 109.47388 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46684 * 59.99683 * 22 21 20 42 42 H 1.08992 * 109.47334 * 299.99332 * 23 22 21 43 43 H 1.09004 * 109.46375 * 179.97438 * 23 22 21 44 44 H 1.08992 * 109.47238 * 179.97438 * 24 23 22 45 45 H 1.09002 * 109.47600 * 59.99432 * 24 23 22 46 46 H 1.09003 * 109.47621 * 300.00403 * 25 20 18 47 47 H 1.09007 * 109.47183 * 60.00066 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.9610 0.1860 2.3753 6 1 1.1015 0.8509 2.2897 7 6 1.8245 -0.6635 3.6405 8 6 3.2236 1.0049 2.4541 9 1 3.9929 0.8845 1.7057 10 6 3.3967 1.9079 3.4815 11 7 2.4598 2.0549 4.3926 12 14 4.9616 2.9235 3.5787 13 1 4.7764 4.1912 2.8277 14 1 5.2655 3.2296 4.9995 15 1 6.0868 2.1569 2.9859 16 6 2.0324 -0.7106 -1.2304 17 8 2.7296 -1.6966 -1.1190 18 7 1.7069 -0.2501 -2.4546 19 6 0.8643 0.9407 -2.5890 20 6 2.1956 -0.9405 -3.6506 21 6 1.0059 -1.4216 -4.4837 22 6 1.5163 -2.1422 -5.7332 23 6 2.3659 -1.1797 -6.5656 24 6 3.5556 -0.6986 -5.7326 25 6 3.0454 0.0215 -4.4832 26 1 -0.3633 0.3839 0.9532 27 1 -0.3632 0.6337 -0.8090 28 1 -0.3633 -1.0175 -0.1443 29 1 2.9545 -1.0446 1.0575 30 1 0.9284 -1.2801 3.5691 31 1 2.6997 -1.3051 3.7435 32 1 1.7481 -0.0108 4.5100 33 1 2.5814 2.6905 5.1152 34 1 -0.1836 0.6425 -2.6225 35 1 1.0274 1.5995 -1.7360 36 1 1.1221 1.4663 -3.5085 37 1 2.8017 -1.7964 -3.3539 38 1 0.4005 -2.1070 -3.8906 39 1 0.4001 -0.5654 -4.7804 40 1 0.6688 -2.4853 -6.3265 41 1 2.1224 -2.9983 -5.4368 42 1 1.7599 -0.3236 -6.8620 43 1 2.7298 -1.6932 -7.4556 44 1 4.1610 -0.0133 -6.3257 45 1 4.1616 -1.5547 -5.4362 46 1 2.4397 0.8777 -4.7800 47 1 3.8930 0.3643 -3.8897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:19 Heat of formation + Delta-G solvation = -52.006326 kcal Electronic energy + Delta-G solvation = -23554.859356 eV Core-core repulsion = 20350.770078 eV Total energy + Delta-G solvation = -3204.089279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21708 -38.19461 -35.79508 -35.01813 -32.90843 -30.95123 -30.82245 -29.34121 -27.22648 -26.71289 -25.02743 -23.84418 -22.78481 -21.74573 -19.91227 -19.63932 -18.81894 -16.83074 -16.63654 -16.17664 -15.25539 -15.14281 -14.69755 -14.46925 -14.33765 -14.10894 -13.66821 -13.25631 -12.98286 -12.74414 -12.60751 -12.46569 -12.35569 -12.12289 -11.77424 -11.47497 -11.31904 -11.31262 -11.25960 -11.03559 -10.93522 -10.83711 -10.77670 -10.47007 -10.39889 -10.25884 -10.06302 -9.94755 -9.15481 -9.03716 -8.48179 -8.39665 -7.27747 -6.00079 -4.12289 3.01686 3.13017 3.26527 3.34146 3.38470 4.39997 4.48244 4.59312 4.71331 4.85223 5.04570 5.06694 5.14821 5.23774 5.28287 5.30751 5.32532 5.33613 5.45238 5.50030 5.56463 5.68839 5.76496 5.83557 5.85783 5.91060 5.92864 5.95917 6.03596 6.17064 6.18914 6.25485 6.43719 6.67474 6.71673 6.92464 7.19614 7.32925 7.46504 7.60523 7.76272 8.10085 8.17634 8.31495 8.52562 8.69683 9.01171 9.55622 11.01006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.004022 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.754952 B = 6959.776084 C = 7512.167896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 H 0.069 0.931 4 N -0.675 5.675 5 C 0.208 3.792 6 H 0.035 0.965 7 C -0.123 4.123 8 C -0.546 4.546 9 H 0.053 0.947 10 C 0.068 3.932 11 N -0.886 5.886 12 Si 0.888 3.112 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.519 3.481 17 O -0.534 6.534 18 N -0.617 5.617 19 C 0.075 3.925 20 C 0.140 3.860 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.128 4.128 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.342 0.658 30 H 0.014 0.986 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -2.399 -20.045 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 H 0.086 0.914 4 N -0.308 5.308 5 C 0.100 3.900 6 H 0.052 0.948 7 C -0.182 4.182 8 C -0.585 4.585 9 H 0.071 0.929 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.308 3.692 17 O -0.409 6.409 18 N -0.351 5.351 19 C -0.068 4.068 20 C 0.037 3.963 21 C -0.164 4.164 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.167 4.167 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.161 0.839 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.550 -3.130 -19.646 20.407 hybrid contribution 1.601 1.403 -0.053 2.130 sum -2.949 -1.727 -19.698 19.993 Atomic orbital electron populations 1.21939 0.93608 1.01764 1.02556 1.21289 0.96501 0.97074 0.88964 0.91352 1.60895 1.30484 1.37747 1.01681 1.19206 0.95969 0.89158 0.85662 0.94760 1.21660 0.97013 0.98529 1.00972 1.21871 1.03984 1.21928 1.10751 0.92929 1.24915 0.96303 0.96743 0.95446 1.69885 1.33121 1.35625 1.13784 0.86656 0.83950 0.80490 0.77286 1.20760 1.21096 1.19961 1.21173 0.79163 0.84301 0.84549 1.90627 1.37821 1.26336 1.86120 1.47892 1.52225 1.29437 1.05567 1.21942 0.94377 0.87503 1.02942 1.21014 0.95066 0.95959 0.84299 1.21865 0.97757 1.00460 0.96316 1.21502 0.99562 0.98394 0.96035 1.21556 0.96946 0.99206 0.98021 1.21487 0.97630 1.00353 0.96001 1.21883 0.99829 0.98525 0.96434 0.91138 0.92340 0.92657 0.83866 0.96729 0.95567 0.90091 0.92890 0.92449 0.90289 0.91523 0.88292 0.91615 0.91775 0.91836 0.91743 0.92027 0.92047 0.91813 0.91728 0.91692 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.94 37.16 0.33 -1.95 16 2 C 0.08 1.44 2.06 -68.86 -0.14 1.30 16 3 H 0.07 1.38 7.01 -51.93 -0.36 1.02 16 4 N -0.67 -15.36 5.87 -102.17 -0.60 -15.96 16 5 C 0.21 5.27 2.37 -68.87 -0.16 5.11 16 6 H 0.03 0.92 6.71 -51.93 -0.35 0.57 16 7 C -0.12 -3.11 9.27 37.16 0.34 -2.77 16 8 C -0.55 -14.99 8.32 -34.44 -0.29 -15.28 16 9 H 0.05 1.46 7.72 -52.49 -0.41 1.06 16 10 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 11 N -0.89 -25.05 11.34 55.43 0.63 -24.42 16 12 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.52 9.45 7.09 -10.98 -0.08 9.38 16 17 O -0.53 -11.48 15.08 5.56 0.08 -11.39 16 18 N -0.62 -8.59 2.76 -173.94 -0.48 -9.07 16 19 C 0.08 0.81 7.85 59.85 0.47 1.28 16 20 C 0.14 1.72 2.52 -67.93 -0.17 1.54 16 21 C -0.13 -1.25 5.20 -26.73 -0.14 -1.39 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.12 -1.01 5.92 -26.75 -0.16 -1.17 16 25 C -0.13 -1.33 5.18 -26.75 -0.14 -1.47 16 26 H 0.07 1.24 6.96 -51.93 -0.36 0.88 16 27 H 0.06 0.75 4.79 -51.93 -0.25 0.50 16 28 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.34 8.30 7.30 -39.29 -0.29 8.01 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 2.19 6.12 -51.93 -0.32 1.87 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.06 0.54 7.14 -51.93 -0.37 0.17 16 35 H 0.08 0.91 5.91 -51.93 -0.31 0.60 16 36 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 37 H 0.10 1.47 6.90 -51.93 -0.36 1.11 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.57 7.67 -51.93 -0.40 0.18 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.60 6.66 -51.93 -0.35 0.26 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -30.19 352.96 -8.84 -39.03 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.23 Total: 6.05 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.54 Total: -5.84 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.45 Total: -49.45 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.19 -8.84 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.972 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds