Wall clock time and date at job start Tue Mar 31 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47628 * 2 1 4 4 C 1.50706 * 109.46961 * 120.00120 * 2 1 3 5 5 H 1.08001 * 119.99854 * 120.00100 * 4 2 1 6 6 C 1.37872 * 119.99868 * 299.99111 * 4 2 1 7 7 N 1.31510 * 120.00265 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99854 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.46960 * 90.00623 * 8 6 4 10 10 H 1.48499 * 109.46969 * 210.00523 * 8 6 4 11 11 H 1.48498 * 109.47005 * 330.00285 * 8 6 4 12 12 N 1.46900 * 109.47270 * 239.99843 * 2 1 3 13 13 C 1.46904 * 110.99880 * 84.99727 * 12 2 1 14 14 H 1.08998 * 109.47050 * 325.00807 * 13 12 2 15 15 C 1.52998 * 109.46688 * 85.00502 * 13 12 2 16 16 C 1.50700 * 109.47192 * 205.00242 * 13 12 2 17 17 O 1.21283 * 119.99803 * 0.02562 * 16 13 12 18 18 N 1.34777 * 119.99675 * 180.28082 * 16 13 12 19 19 C 1.46496 * 120.00345 * 359.72090 * 18 16 13 20 20 C 1.46497 * 119.99525 * 179.72583 * 18 16 13 21 21 C 1.53001 * 109.47063 * 239.99409 * 20 18 16 22 22 C 1.53003 * 109.47008 * 180.02562 * 21 20 18 23 23 C 1.53001 * 109.47011 * 60.00395 * 22 21 20 24 24 C 1.52993 * 109.47313 * 299.99866 * 23 22 21 25 25 C 1.52998 * 109.47135 * 59.99816 * 24 23 22 26 26 H 1.08993 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46867 * 299.99901 * 1 2 3 28 28 H 1.08997 * 109.46847 * 59.99535 * 1 2 3 29 29 H 0.97002 * 120.00336 * 179.97438 * 7 6 4 30 30 H 1.00893 * 111.00531 * 208.95439 * 12 2 1 31 31 H 1.09004 * 109.47239 * 179.97438 * 15 13 12 32 32 H 1.09005 * 109.47323 * 300.00140 * 15 13 12 33 33 H 1.09006 * 109.47458 * 59.99790 * 15 13 12 34 34 H 1.08997 * 109.47115 * 90.00316 * 19 18 16 35 35 H 1.08995 * 109.47364 * 210.00706 * 19 18 16 36 36 H 1.09002 * 109.47090 * 330.00257 * 19 18 16 37 37 H 1.08996 * 109.47805 * 359.97438 * 20 18 16 38 38 H 1.08998 * 109.47418 * 300.00350 * 21 20 18 39 39 H 1.09004 * 109.46803 * 60.00270 * 21 20 18 40 40 H 1.08998 * 109.47298 * 300.00400 * 22 21 20 41 41 H 1.09005 * 109.46705 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46985 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47086 * 59.99875 * 23 22 21 44 44 H 1.09007 * 109.47003 * 299.99934 * 24 23 22 45 45 H 1.08997 * 109.47774 * 180.02562 * 24 23 22 46 46 H 1.09011 * 109.47248 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47491 * 60.00170 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9489 5.1123 11 1 2.4880 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 1.2576 0.9329 -2.2906 15 6 3.4111 0.9808 -2.3224 16 6 1.9786 -0.5677 -3.6259 17 8 1.8631 -1.7743 -3.5855 18 7 2.0191 0.0660 -4.8147 19 6 2.1580 1.5236 -4.8635 20 6 1.9242 -0.7028 -6.0581 21 6 3.1865 -0.4795 -6.8934 22 6 3.0870 -1.2820 -8.1923 23 6 1.8627 -0.8197 -8.9849 24 6 0.6004 -1.0429 -8.1497 25 6 0.6998 -0.2405 -6.8508 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.7085 1.1610 3.4844 30 1 2.9173 -1.1205 -1.0288 31 1 3.4579 1.6595 -3.1741 32 1 3.4863 1.5523 -1.3973 33 1 4.2360 0.2704 -2.3786 34 1 3.2153 1.7870 -4.8930 35 1 1.6632 1.9061 -5.7561 36 1 1.6989 1.9622 -3.9775 37 1 1.8269 -1.7627 -5.8235 38 1 3.2842 0.5804 -7.1281 39 1 4.0588 -0.8085 -6.3285 40 1 2.9891 -2.3420 -7.9579 41 1 3.9866 -1.1233 -8.7871 42 1 1.7921 -1.3911 -9.9105 43 1 1.9606 0.2403 -9.2192 44 1 0.5025 -2.1029 -7.9153 45 1 -0.2719 -0.7140 -8.7144 46 1 -0.1994 -0.3998 -6.2555 47 1 0.7978 0.8195 -7.0850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:22 Heat of formation + Delta-G solvation = -47.882461 kcal Electronic energy + Delta-G solvation = -23419.047571 eV Core-core repulsion = 20215.137117 eV Total energy + Delta-G solvation = -3203.910454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17488 -38.15734 -35.93964 -34.95488 -33.00879 -30.95300 -30.77209 -29.34687 -27.09100 -26.64700 -25.19721 -23.97070 -22.78969 -21.91260 -19.91786 -19.62574 -18.86591 -17.00592 -16.53663 -15.94701 -15.26029 -14.92327 -14.79132 -14.35566 -14.23198 -14.08808 -13.89167 -13.18851 -13.03173 -12.95864 -12.62698 -12.45762 -12.35933 -12.35007 -11.97804 -11.53547 -11.45605 -11.29351 -11.28970 -10.97674 -10.83960 -10.80580 -10.69489 -10.46457 -10.39950 -10.37575 -10.10236 -9.98428 -9.13351 -8.82122 -8.46905 -8.44141 -7.20942 -6.01930 -4.07492 3.09265 3.13578 3.31058 3.37762 3.43206 4.41914 4.48060 4.58930 4.70780 4.85198 5.03169 5.05922 5.12849 5.21862 5.28092 5.30124 5.31841 5.33381 5.43280 5.45936 5.53800 5.55727 5.61069 5.70829 5.82869 5.84853 5.92111 5.95007 6.02752 6.05922 6.16918 6.18864 6.26717 6.44895 6.73315 6.87212 7.15078 7.22462 7.46237 7.63658 7.80849 7.90208 8.27845 8.40753 8.61040 8.71281 9.03117 9.58339 11.04603 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.003352 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.674295 B = 8350.575960 C = 8379.917251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.665 5.665 13 C 0.072 3.928 14 H 0.095 0.905 15 C -0.186 4.186 16 C 0.520 3.480 17 O -0.519 6.519 18 N -0.622 5.622 19 C 0.077 3.923 20 C 0.140 3.860 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.128 4.128 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.001 0.999 29 H 0.261 0.739 30 H 0.337 0.663 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 3.034 -21.585 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.296 5.296 13 C -0.042 4.042 14 H 0.113 0.887 15 C -0.246 4.246 16 C 0.308 3.692 17 O -0.392 6.392 18 N -0.357 5.357 19 C -0.066 4.066 20 C 0.037 3.963 21 C -0.164 4.164 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.166 4.166 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.020 0.980 29 H 0.070 0.930 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.121 2.224 -21.524 21.743 hybrid contribution 1.037 0.320 1.080 1.531 sum 3.158 2.544 -20.444 20.842 Atomic orbital electron populations 1.21744 0.97920 0.99562 0.99133 1.19140 0.92534 0.92339 0.85296 0.97914 1.21252 1.31370 1.12519 0.90333 0.92122 1.24899 0.95029 0.95015 0.99010 1.69890 1.36670 1.22999 1.23451 0.86513 0.78401 0.80187 0.82420 1.20788 1.21222 1.19789 1.60427 1.32948 1.31508 1.04758 1.21392 0.98051 0.93921 0.90853 0.88704 1.22700 0.97569 1.01091 1.03193 1.21142 0.74941 0.88521 0.84595 1.90638 1.47373 1.14544 1.86630 1.47971 1.74904 1.07175 1.05664 1.21885 1.01166 0.80638 1.02902 1.20997 0.94082 0.97960 0.83277 1.21866 0.98000 1.00522 0.96004 1.21502 0.97972 1.00193 0.95846 1.21553 0.94758 1.01254 0.98148 1.21495 0.97671 1.00653 0.95665 1.21888 0.98376 1.00075 0.96277 0.94805 0.89993 0.97982 0.92951 0.84412 0.91697 0.91081 0.92570 0.92601 0.91559 0.90650 0.88280 0.91851 0.91700 0.91727 0.91880 0.92059 0.92066 0.91705 0.91836 0.91529 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.18 37.16 0.34 -2.85 16 2 C 0.21 5.46 2.41 -68.86 -0.17 5.29 16 3 H 0.00 0.09 7.11 -51.93 -0.37 -0.28 16 4 C -0.52 -14.36 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.67 -15.05 5.54 -102.16 -0.57 -15.62 16 13 C 0.07 1.32 2.01 -68.86 -0.14 1.18 16 14 H 0.10 1.74 6.38 -51.93 -0.33 1.41 16 15 C -0.19 -2.85 8.78 37.16 0.33 -2.52 16 16 C 0.52 9.28 7.15 -10.98 -0.08 9.20 16 17 O -0.52 -11.31 15.76 5.55 0.09 -11.22 16 18 N -0.62 -8.34 2.76 -173.94 -0.48 -8.82 16 19 C 0.08 0.78 7.85 59.84 0.47 1.25 16 20 C 0.14 1.68 2.52 -67.93 -0.17 1.51 16 21 C -0.13 -1.22 5.20 -26.73 -0.14 -1.36 16 22 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 23 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 24 C -0.12 -0.98 5.92 -26.74 -0.16 -1.14 16 25 C -0.13 -1.28 5.18 -26.73 -0.14 -1.42 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 28 H 0.00 0.03 7.43 -51.93 -0.39 -0.36 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.34 7.67 7.96 -39.30 -0.31 7.35 16 31 H 0.06 0.78 4.51 -51.93 -0.23 0.55 16 32 H 0.07 1.18 7.43 -51.93 -0.39 0.80 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.06 0.50 6.94 -51.93 -0.36 0.14 16 35 H 0.07 0.54 6.42 -51.93 -0.33 0.20 16 36 H 0.07 0.78 6.02 -51.93 -0.31 0.47 16 37 H 0.10 1.46 6.90 -51.93 -0.36 1.10 16 38 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 47 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -31.13 353.02 -8.80 -39.93 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.20 Total: 4.77 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.56 Total: -6.05 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.42 Total: -49.23 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.13 -8.80 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.951 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds