Wall clock time and date at job start Tue Mar 31 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47649 * 2 1 4 4 C 1.50700 * 109.46833 * 240.00683 * 2 1 3 5 5 H 1.08009 * 119.99849 * 245.11086 * 4 2 1 6 6 C 1.37872 * 120.00647 * 65.11085 * 4 2 1 7 7 N 1.31514 * 119.99770 * 5.94505 * 6 4 2 8 8 Si 1.86797 * 120.00552 * 185.94740 * 6 4 2 9 9 H 1.48499 * 109.47311 * 94.99245 * 8 6 4 10 10 H 1.48502 * 109.47142 * 214.99404 * 8 6 4 11 11 H 1.48504 * 109.47054 * 334.99236 * 8 6 4 12 12 N 1.46893 * 109.47323 * 120.00400 * 2 1 3 13 13 C 1.46893 * 111.00406 * 274.99651 * 12 2 1 14 14 H 1.09006 * 109.46716 * 34.99543 * 13 12 2 15 15 C 1.53004 * 109.47465 * 275.00312 * 13 12 2 16 16 C 1.50695 * 109.47496 * 154.99680 * 13 12 2 17 17 O 1.21284 * 119.99874 * 18.02039 * 16 13 12 18 18 N 1.34778 * 120.00354 * 198.02152 * 16 13 12 19 19 C 1.46501 * 120.00198 * 184.40349 * 18 16 13 20 20 C 1.46504 * 119.99995 * 4.39888 * 18 16 13 21 21 C 1.52992 * 109.47456 * 241.50061 * 20 18 16 22 22 C 1.53004 * 109.47433 * 179.97438 * 21 20 18 23 23 C 1.53000 * 109.46685 * 59.99738 * 22 21 20 24 24 C 1.52995 * 109.47460 * 299.99905 * 23 22 21 25 25 C 1.53002 * 109.46982 * 121.49515 * 20 18 16 26 26 H 1.08999 * 109.47071 * 294.84914 * 1 2 3 27 27 H 1.09001 * 109.47285 * 54.83953 * 1 2 3 28 28 H 1.08997 * 109.47350 * 174.84456 * 1 2 3 29 29 H 0.96996 * 120.00527 * 180.02562 * 7 6 4 30 30 H 1.00901 * 111.00413 * 151.04157 * 12 2 1 31 31 H 1.09002 * 109.46305 * 293.92164 * 15 13 12 32 32 H 1.08996 * 109.47043 * 53.91809 * 15 13 12 33 33 H 1.08999 * 109.47349 * 173.92639 * 15 13 12 34 34 H 1.08997 * 109.46907 * 94.89993 * 19 18 16 35 35 H 1.09002 * 109.47056 * 214.90271 * 19 18 16 36 36 H 1.08994 * 109.47026 * 334.89791 * 19 18 16 37 37 H 1.09000 * 109.46971 * 1.50337 * 20 18 16 38 38 H 1.09000 * 109.47256 * 300.00101 * 21 20 18 39 39 H 1.09003 * 109.47123 * 59.99449 * 21 20 18 40 40 H 1.09000 * 109.47019 * 300.00291 * 22 21 20 41 41 H 1.08997 * 109.47034 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.46766 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46941 * 60.00505 * 23 22 21 44 44 H 1.08992 * 109.47535 * 300.00580 * 24 23 22 45 45 H 1.09001 * 109.47082 * 180.02562 * 24 23 22 46 46 H 1.08994 * 109.47368 * 300.00568 * 25 20 18 47 47 H 1.09000 * 109.46596 * 60.00593 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5834 -1.6341 -1.1337 6 6 1.7883 -0.1810 -2.4800 7 7 1.2211 1.0000 -2.5945 8 14 2.2633 -1.1411 -4.0103 9 1 1.0895 -1.9100 -4.4965 10 1 2.7099 -0.1986 -5.0674 11 1 3.3681 -2.0782 -3.6837 12 7 2.0197 -0.6925 1.1993 13 6 2.0826 0.2224 2.3468 14 1 1.2577 0.9328 2.2906 15 6 3.4112 0.9807 2.3223 16 6 1.9787 -0.5679 3.6257 17 8 2.1906 -1.7621 3.6196 18 7 1.6504 0.0523 4.7764 19 6 1.6435 -0.6961 6.0358 20 6 1.3005 1.4749 4.7678 21 6 2.2974 2.2506 5.6310 22 6 1.9323 3.7364 5.6215 23 6 0.5211 3.9183 6.1838 24 6 -0.4758 3.1427 5.3206 25 6 -0.1107 1.6564 5.3304 26 1 -0.3633 0.4319 0.9325 27 1 -0.3634 0.5918 -0.8402 28 1 -0.3634 -1.0235 -0.0923 29 1 1.0491 1.3724 -3.4735 30 1 2.9173 -1.1206 1.0286 31 1 4.2314 0.2818 2.4866 32 1 3.5352 1.4652 1.3539 33 1 3.4136 1.7351 3.1090 34 1 2.6007 -0.5663 6.5408 35 1 0.8422 -0.3247 6.6748 36 1 1.4823 -1.7540 5.8289 37 1 1.3351 1.8514 3.7455 38 1 2.2628 1.8741 6.6534 39 1 3.3028 2.1212 5.2302 40 1 1.9673 4.1126 4.5991 41 1 2.6424 4.2889 6.2369 42 1 0.2608 4.9768 6.1767 43 1 0.4861 3.5422 7.2063 44 1 -0.4408 3.5188 4.2982 45 1 -1.4813 3.2727 5.7210 46 1 -0.8209 1.1038 4.7155 47 1 -0.1454 1.2799 6.3528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:24 Heat of formation + Delta-G solvation = -53.278900 kcal Electronic energy + Delta-G solvation = -23831.757639 eV Core-core repulsion = 20627.613177 eV Total energy + Delta-G solvation = -3204.144462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20285 -38.16466 -36.05277 -34.68011 -32.97922 -30.97450 -30.48108 -29.61140 -27.42589 -26.74169 -25.16251 -23.29281 -22.79001 -22.32061 -19.94314 -19.83790 -18.61744 -17.25516 -16.30976 -15.96559 -15.21446 -14.91419 -14.78750 -14.35983 -14.21738 -13.92757 -13.84601 -13.46312 -13.05396 -12.85971 -12.53119 -12.38497 -12.33260 -12.10042 -12.00851 -11.83651 -11.57688 -11.36375 -11.28606 -10.96789 -10.87584 -10.69490 -10.61450 -10.51827 -10.45106 -10.40905 -10.21411 -9.96449 -9.20234 -8.85541 -8.46656 -8.45145 -7.23380 -6.05049 -4.07420 3.07285 3.15609 3.31696 3.38462 3.42814 4.42036 4.46974 4.58620 4.62597 4.91288 4.92854 5.05396 5.20764 5.26131 5.27031 5.30234 5.31206 5.43775 5.47492 5.48812 5.57700 5.61066 5.61591 5.81985 5.84241 5.90082 5.92413 5.94332 5.99384 6.06858 6.16980 6.18222 6.24244 6.45927 6.69657 6.81826 7.08540 7.16092 7.38773 7.62245 7.81020 7.84418 8.16825 8.37355 8.60873 8.69335 9.03740 9.58056 11.04194 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.004273 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.487922 B = 6551.615892 C = 7092.876094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.212 3.788 3 H 0.010 0.990 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.668 5.668 13 C 0.070 3.930 14 H 0.092 0.908 15 C -0.175 4.175 16 C 0.524 3.476 17 O -0.524 6.524 18 N -0.620 5.620 19 C 0.084 3.916 20 C 0.136 3.864 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.130 4.130 26 H 0.006 0.994 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.341 0.659 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 7.410 18.616 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 H 0.028 0.972 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.300 5.300 13 C -0.044 4.044 14 H 0.110 0.890 15 C -0.234 4.234 16 C 0.312 3.688 17 O -0.398 6.398 18 N -0.355 5.355 19 C -0.059 4.059 20 C 0.032 3.968 21 C -0.167 4.167 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.169 4.169 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.949 6.595 18.607 19.764 hybrid contribution 0.880 0.159 -1.013 1.352 sum -0.069 6.754 17.594 18.846 Atomic orbital electron populations 1.21675 0.98245 0.99909 0.97955 1.19149 0.92129 0.92865 0.85384 0.97230 1.21235 1.35444 1.08505 0.90447 0.92040 1.24898 0.95177 0.94715 0.99005 1.69944 1.43432 1.15903 1.23700 0.86534 0.78788 0.79802 0.82598 1.20662 1.21357 1.19817 1.60435 1.33329 1.31450 1.04774 1.21446 0.98119 0.93952 0.90921 0.89031 1.22457 0.97461 1.00468 1.03040 1.21074 0.75158 0.88043 0.84549 1.90631 1.48472 1.15073 1.85645 1.47986 1.69916 1.10055 1.07571 1.21515 1.00639 0.98057 0.85676 1.21272 0.93914 0.80392 1.01263 1.21920 0.99195 0.95138 1.00422 1.21521 0.96681 0.95693 1.01765 1.21557 0.94905 1.00013 0.99280 1.21522 0.98820 0.94513 1.00782 1.21920 0.96383 0.96869 1.01695 0.97536 0.91614 0.94560 0.92968 0.84021 0.92392 0.90696 0.92611 0.93439 0.91881 0.90463 0.88440 0.91679 0.91440 0.91486 0.91782 0.91948 0.92114 0.91430 0.91708 0.91264 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.19 37.16 0.34 -2.61 16 2 C 0.21 5.34 2.27 -68.87 -0.16 5.18 16 3 H 0.01 0.27 7.08 -51.93 -0.37 -0.10 16 4 C -0.52 -14.31 8.50 -34.44 -0.29 -14.60 16 5 H 0.06 1.71 7.68 -52.48 -0.40 1.31 16 6 C 0.06 1.77 5.28 -17.82 -0.09 1.68 16 7 N -0.89 -25.32 12.00 55.43 0.67 -24.65 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.67 -15.03 5.60 -102.18 -0.57 -15.60 16 13 C 0.07 1.28 1.93 -68.87 -0.13 1.15 16 14 H 0.09 1.66 5.46 -51.93 -0.28 1.38 16 15 C -0.17 -2.79 8.96 37.16 0.33 -2.46 16 16 C 0.52 9.43 6.93 -10.99 -0.08 9.36 16 17 O -0.52 -11.38 16.02 5.55 0.09 -11.29 16 18 N -0.62 -8.56 2.76 -173.94 -0.48 -9.04 16 19 C 0.08 0.99 9.66 59.85 0.58 1.56 16 20 C 0.14 1.52 1.83 -67.93 -0.12 1.40 16 21 C -0.13 -1.19 5.09 -26.73 -0.14 -1.32 16 22 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 23 C -0.12 -0.90 5.92 -26.73 -0.16 -1.05 16 24 C -0.12 -1.00 5.92 -26.71 -0.16 -1.16 16 25 C -0.13 -1.29 5.14 -26.70 -0.14 -1.43 16 26 H 0.01 0.13 7.37 -51.93 -0.38 -0.26 16 27 H 0.07 1.73 6.85 -51.93 -0.36 1.37 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.34 7.81 8.00 -39.29 -0.31 7.50 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.30 7.37 -51.93 -0.38 0.92 16 33 H 0.05 0.73 6.14 -51.93 -0.32 0.41 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 36 H 0.08 1.05 7.23 -51.93 -0.38 0.67 16 37 H 0.10 1.21 4.91 -51.93 -0.25 0.96 16 38 H 0.06 0.56 7.71 -51.93 -0.40 0.16 16 39 H 0.07 0.67 7.30 -51.93 -0.38 0.29 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.59 6.65 -51.93 -0.35 0.25 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -30.74 355.62 -8.59 -39.33 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.26 Total: 4.86 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.37 Total: -5.41 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.39 Total: -49.30 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.74 -8.59 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.946 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds