Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47222 * 2 1 4 4 C 1.34773 * 120.00069 * 90.00008 * 3 2 1 5 5 O 1.21286 * 119.99758 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.99996 * 0.02562 * 4 3 2 7 7 N 1.46901 * 109.47015 * 180.02562 * 6 4 3 8 8 C 1.46897 * 111.00336 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.47111 * 325.00006 * 8 7 6 10 10 C 1.53005 * 109.47196 * 84.99406 * 8 7 6 11 11 C 1.50691 * 109.47694 * 205.00049 * 8 7 6 12 12 H 1.08005 * 119.99916 * 354.48174 * 11 8 7 13 13 C 1.37879 * 120.00577 * 174.47966 * 11 8 7 14 14 N 1.31510 * 120.00198 * 164.58060 * 13 11 8 15 15 Si 1.86797 * 119.99486 * 344.86619 * 13 11 8 16 16 H 1.48500 * 109.47007 * 269.71594 * 15 13 11 17 17 H 1.48498 * 109.47775 * 29.72179 * 15 13 11 18 18 H 1.48508 * 109.46999 * 149.72292 * 15 13 11 19 19 C 1.46500 * 119.99901 * 269.99743 * 3 2 1 20 20 C 1.52994 * 109.47414 * 240.00135 * 19 3 2 21 21 C 1.52994 * 109.47432 * 179.97438 * 20 19 3 22 22 C 1.52998 * 109.47059 * 59.99929 * 21 20 19 23 23 C 1.53001 * 109.47356 * 299.99959 * 22 21 20 24 24 C 1.53002 * 109.46972 * 119.99721 * 19 3 2 25 25 H 1.08997 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47310 * 300.00302 * 1 2 3 27 27 H 1.08996 * 109.47336 * 59.99824 * 1 2 3 28 28 H 1.09004 * 109.47310 * 239.99698 * 2 1 3 29 29 H 1.09007 * 109.47024 * 119.99769 * 2 1 3 30 30 H 1.08989 * 109.47286 * 60.00091 * 6 4 3 31 31 H 1.08998 * 109.46850 * 299.99488 * 6 4 3 32 32 H 1.00905 * 111.00052 * 303.95359 * 7 6 4 33 33 H 1.08994 * 109.47388 * 293.55052 * 10 8 7 34 34 H 1.09005 * 109.46503 * 53.54384 * 10 8 7 35 35 H 1.08994 * 109.47024 * 173.54296 * 10 8 7 36 36 H 0.96999 * 120.00545 * 355.19703 * 14 13 11 37 37 H 1.09000 * 109.46994 * 0.02562 * 19 3 2 38 38 H 1.09000 * 109.47332 * 300.00150 * 20 19 3 39 39 H 1.09006 * 109.47326 * 59.99838 * 20 19 3 40 40 H 1.08996 * 109.47150 * 299.99895 * 21 20 19 41 41 H 1.08999 * 109.47455 * 179.97438 * 21 20 19 42 42 H 1.09007 * 109.47266 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47168 * 59.99976 * 22 21 20 44 44 H 1.08996 * 109.46996 * 300.00123 * 23 22 21 45 45 H 1.08996 * 109.47379 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47153 * 300.00311 * 24 19 3 47 47 H 1.09000 * 109.46631 * 60.00550 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 1.1672 5 8 2.6477 3.1599 1.1671 6 6 1.9923 1.3060 2.4723 7 7 2.3099 2.2062 3.5888 8 6 2.0764 1.5461 4.8802 9 1 1.2165 0.8812 4.7982 10 6 3.3136 0.7342 5.2690 11 6 1.8071 2.5876 5.9354 12 1 1.8966 3.6366 5.6941 13 6 1.4462 2.2017 7.2089 14 7 1.5052 3.0650 8.1993 15 14 0.8812 0.4502 7.5290 16 1 -0.5919 0.3668 7.3608 17 1 1.5421 -0.4671 6.5663 18 1 1.2440 0.0585 8.9148 19 6 2.2625 2.0718 -1.2687 20 6 3.7335 2.4846 -1.3498 21 6 3.9887 3.2052 -2.6751 22 6 3.1041 4.4509 -2.7568 23 6 1.6331 4.0381 -2.6758 24 6 1.3779 3.3175 -1.3499 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.6228 0.4188 2.5299 31 1 0.9445 1.0115 2.5302 32 1 3.2579 2.5451 3.5218 33 1 3.4419 -0.0906 4.5681 34 1 4.1937 1.3765 5.2392 35 1 3.1864 0.3384 6.2765 36 1 1.8680 3.9519 8.0487 37 1 2.0260 1.4041 -2.0972 38 1 3.9697 3.1525 -0.5214 39 1 4.3637 1.5971 -1.2920 40 1 3.7527 2.5371 -3.5033 41 1 5.0365 3.4998 -2.7327 42 1 3.2856 4.9641 -3.7013 43 1 3.3401 5.1191 -1.9286 44 1 1.3971 3.3700 -3.5040 45 1 1.0029 4.9256 -2.7336 46 1 0.3299 3.0233 -1.2921 47 1 1.6141 3.9853 -0.5214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602866217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -51.516680 kcal Electronic energy + Delta-G solvation = -23531.786618 eV Core-core repulsion = 20327.718572 eV Total energy + Delta-G solvation = -3204.068046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37808 -37.77942 -35.90113 -35.60356 -32.49887 -31.32626 -30.82691 -29.94454 -28.73112 -25.61099 -24.54220 -23.36582 -22.63653 -22.41787 -20.14351 -19.90358 -18.78357 -17.44354 -16.62153 -16.42177 -15.46855 -15.02315 -14.38878 -14.31722 -14.25854 -14.06182 -13.89822 -13.58863 -13.43413 -13.01218 -12.68727 -12.51513 -12.40220 -12.26627 -12.08418 -11.84306 -11.70362 -11.51644 -11.38436 -11.20222 -11.12117 -11.02721 -10.78257 -10.52355 -10.33134 -10.29229 -10.07862 -9.61117 -9.21308 -8.84648 -8.57925 -8.23414 -7.41386 -6.36089 -3.96018 2.90301 2.99964 3.41157 3.43320 3.58205 4.47162 4.54093 4.66011 4.72039 4.81973 4.86432 5.03961 5.14046 5.19642 5.20743 5.24002 5.27666 5.32588 5.42180 5.44654 5.45927 5.56198 5.63088 5.69100 5.72116 5.79090 5.88512 5.93620 6.03409 6.07854 6.13164 6.19697 6.25157 6.30937 6.35980 6.40022 6.60132 6.74697 6.79583 7.18442 7.47437 7.80423 8.29443 8.32959 8.50296 8.53746 9.09677 9.71488 11.02446 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.003939 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.427070 B = 7106.600445 C = 7549.047708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.620 5.620 4 C 0.517 3.483 5 O -0.515 6.515 6 C 0.040 3.960 7 N -0.657 5.657 8 C 0.189 3.811 9 H 0.027 0.973 10 C -0.176 4.176 11 C -0.580 4.580 12 H 0.064 0.936 13 C 0.027 3.973 14 N -0.911 5.911 15 Si 1.043 2.957 16 H -0.287 1.287 17 H -0.275 1.275 18 H -0.287 1.287 19 C 0.158 3.842 20 C -0.137 4.137 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.137 4.137 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.338 0.662 33 H 0.018 0.982 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.268 0.732 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -7.111 -23.616 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.355 5.355 4 C 0.305 3.695 5 O -0.390 6.390 6 C -0.093 4.093 7 N -0.289 5.289 8 C 0.080 3.920 9 H 0.045 0.955 10 C -0.235 4.235 11 C -0.618 4.618 12 H 0.082 0.918 13 C -0.177 4.177 14 N -0.546 5.546 15 Si 0.872 3.128 16 H -0.214 1.214 17 H -0.200 1.200 18 H -0.213 1.213 19 C 0.055 3.945 20 C -0.176 4.176 21 C -0.150 4.150 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.176 4.176 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.156 0.844 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.402 -7.186 -22.414 23.541 hybrid contribution 1.232 0.188 -1.183 1.718 sum 1.633 -6.998 -23.596 24.666 Atomic orbital electron populations 1.22242 0.95876 1.02222 1.02836 1.21570 0.94591 0.82574 1.03061 1.48207 1.67397 1.14091 1.05827 1.20902 0.76682 0.86839 0.85071 1.90619 1.44007 1.17429 1.86912 1.21943 1.02283 0.94893 0.90172 1.60484 1.31248 1.36465 1.00678 1.19602 0.92205 0.93676 0.86476 0.95496 1.22874 1.01323 0.98700 1.00646 1.21987 1.51052 0.93987 0.94789 0.91781 1.25686 0.94780 1.05243 0.92008 1.70778 1.43344 1.07753 1.32720 0.84127 0.76844 0.75956 0.75892 1.21365 1.20040 1.21284 1.20958 0.95112 0.93603 0.84836 1.21976 0.95483 1.00987 0.99131 1.21458 0.99552 0.96953 0.97083 1.21553 0.94956 0.97709 1.01658 1.21475 0.96511 0.99974 0.97131 1.21991 0.98810 0.97707 0.99058 0.91571 0.91880 0.92439 0.90685 0.90171 0.93766 0.88914 0.84371 0.96272 0.93623 0.92515 0.92152 0.90420 0.89338 0.92473 0.92420 0.91981 0.92312 0.91546 0.92451 0.91939 0.92334 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 37.15 0.38 -1.15 16 2 C 0.11 0.98 5.90 -4.04 -0.02 0.95 16 3 N -0.62 -7.63 2.42 -166.11 -0.40 -8.03 16 4 C 0.52 8.39 7.13 -10.99 -0.08 8.31 16 5 O -0.52 -10.03 12.41 5.55 0.07 -9.96 16 6 C 0.04 0.68 4.52 -4.97 -0.02 0.66 16 7 N -0.66 -14.35 5.86 -109.23 -0.64 -14.99 16 8 C 0.19 4.52 2.12 -68.87 -0.15 4.38 16 9 H 0.03 0.64 6.43 -51.93 -0.33 0.31 16 10 C -0.18 -3.82 8.45 37.16 0.31 -3.50 16 11 C -0.58 -16.70 9.12 -34.44 -0.31 -17.02 16 12 H 0.06 2.05 8.06 -52.48 -0.42 1.63 16 13 C 0.03 0.79 5.33 -17.82 -0.09 0.69 16 14 N -0.91 -28.47 13.70 55.43 0.76 -27.71 16 15 Si 1.04 25.01 26.17 -169.99 -4.45 20.57 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -5.93 5.53 56.52 0.31 -5.62 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.16 1.76 2.54 -67.93 -0.17 1.59 16 20 C -0.14 -1.58 5.13 -26.74 -0.14 -1.72 16 21 C -0.11 -1.05 5.92 -26.74 -0.16 -1.21 16 22 C -0.12 -1.17 5.92 -26.73 -0.16 -1.32 16 23 C -0.11 -1.09 5.93 -26.70 -0.16 -1.25 16 24 C -0.14 -1.65 5.14 -26.70 -0.14 -1.78 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.67 7.22 -51.93 -0.38 0.30 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 29 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 30 H 0.04 0.68 6.83 -51.94 -0.35 0.33 16 31 H 0.09 1.52 7.10 -51.93 -0.37 1.15 16 32 H 0.34 7.43 8.09 -39.29 -0.32 7.11 16 33 H 0.02 0.35 7.63 -51.93 -0.40 -0.05 16 34 H 0.04 0.97 8.01 -51.93 -0.42 0.56 16 35 H 0.06 1.27 5.06 -51.93 -0.26 1.01 16 36 H 0.27 8.42 8.73 -40.82 -0.36 8.06 16 37 H 0.08 0.72 7.79 -51.93 -0.40 0.31 16 38 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.39 6.17 -51.93 -0.32 1.07 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -32.15 352.76 -8.76 -40.91 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.51 Total: 6.27 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.91 Total: -12.37 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.28 Total: -50.73 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.45 Total: 20.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.15 -8.76 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.610 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds