Wall clock time and date at job start Tue Mar 31 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 N 1.46900 * 109.46999 * 119.99689 * 2 1 3 5 5 C 1.46903 * 111.00029 * 275.00148 * 4 2 1 6 6 C 1.53036 * 109.46343 * 275.06770 * 5 4 2 7 7 C 1.53190 * 109.31163 * 178.61470 * 6 5 4 8 8 N 1.46919 * 108.77629 * 54.63962 * 7 6 5 9 9 C 1.36935 * 120.63315 * 126.37161 * 8 7 6 10 10 H 1.07998 * 119.99988 * 331.85111 * 9 8 7 11 11 C 1.38809 * 120.00476 * 151.85750 * 9 8 7 12 12 N 1.31625 * 119.99717 * 343.07278 * 11 9 8 13 13 Si 1.86801 * 120.00256 * 163.06791 * 11 9 8 14 14 H 1.48503 * 109.46947 * 60.00257 * 13 11 9 15 15 H 1.48504 * 109.47233 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47216 * 300.00161 * 13 11 9 17 17 C 1.46931 * 118.73723 * 306.38517 * 8 7 6 18 18 C 1.53048 * 109.45624 * 154.99900 * 5 4 2 19 19 C 1.53001 * 109.47451 * 240.00227 * 2 1 3 20 20 C 1.53174 * 109.54178 * 179.55322 * 19 2 1 21 21 C 1.53085 * 109.16316 * 183.14938 * 20 19 2 22 22 O 1.42908 * 109.41502 * 57.60968 * 21 20 19 23 23 C 1.42902 * 114.09673 * 298.84248 * 22 21 20 24 24 C 1.53095 * 109.41521 * 61.15544 * 23 22 21 25 25 H 1.09003 * 109.46865 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47334 * 300.00255 * 1 2 3 27 27 H 1.09002 * 109.46937 * 60.00588 * 1 2 3 28 28 H 1.00896 * 110.99630 * 38.95838 * 4 2 1 29 29 H 1.09000 * 109.45929 * 35.03307 * 5 4 2 30 30 H 1.08997 * 109.49783 * 298.56905 * 6 5 4 31 31 H 1.09010 * 109.49575 * 58.66610 * 6 5 4 32 32 H 1.09002 * 109.59061 * 294.84515 * 7 6 5 33 33 H 1.08999 * 109.70202 * 174.49738 * 7 6 5 34 34 H 0.97001 * 119.99866 * 180.02562 * 12 11 9 35 35 H 1.08995 * 109.58711 * 293.82710 * 17 8 7 36 36 H 1.09000 * 109.70438 * 173.46439 * 17 8 7 37 37 H 1.08993 * 109.49526 * 301.33869 * 18 5 4 38 38 H 1.08997 * 109.49203 * 61.44001 * 18 5 4 39 39 H 1.09000 * 109.53962 * 299.81949 * 19 2 1 40 40 H 1.08996 * 109.52820 * 303.05971 * 20 19 2 41 41 H 1.09007 * 109.52370 * 63.24488 * 20 19 2 42 42 H 1.09001 * 109.48584 * 297.62728 * 21 20 19 43 43 H 1.09002 * 109.48211 * 177.59192 * 21 20 19 44 44 H 1.09003 * 109.47882 * 301.17268 * 23 22 21 45 45 H 1.08996 * 109.48227 * 181.13798 * 23 22 21 46 46 H 1.08993 * 109.52151 * 182.48393 * 24 23 22 47 47 H 1.09003 * 109.51963 * 62.29711 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 3.4107 0.9823 2.3213 7 6 3.4578 1.9603 3.4994 8 7 3.2124 1.2160 4.7421 9 6 4.0897 1.2992 5.7901 10 1 5.1339 1.5038 5.6053 11 6 3.6371 1.1204 7.0901 12 7 2.3508 1.2037 7.3564 13 14 4.8536 0.7616 8.4616 14 1 5.8221 1.8821 8.5699 15 1 4.1224 0.6142 9.7458 16 1 5.5831 -0.4960 8.1597 17 6 2.0077 0.3803 4.8388 18 6 1.9769 -0.5801 3.6456 19 6 2.0401 -0.7212 -1.2492 20 6 3.5718 -0.7123 -1.2564 21 6 4.0720 -1.3659 -2.5472 22 8 3.5366 -0.6661 -3.6724 23 6 2.1095 -0.6814 -3.7439 24 6 1.5304 -0.0004 -2.5010 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.4496 -1.4978 1.4100 29 1 1.2572 0.9326 2.2908 30 1 4.2360 0.2749 2.4024 31 1 3.4955 1.5353 1.3857 32 1 2.6894 2.7229 3.3723 33 1 4.4385 2.4340 3.5448 34 1 2.0345 1.0791 8.2649 35 1 1.1211 1.0139 4.8208 36 1 2.0301 -0.1908 5.7669 37 1 1.0412 -1.1391 3.6527 38 1 2.8157 -1.2727 3.7143 39 1 1.6801 -1.7500 -1.2488 40 1 3.9305 0.3157 -1.2059 41 1 3.9434 -1.2713 -0.3975 42 1 3.7471 -2.4059 -2.5778 43 1 5.1608 -1.3240 -2.5776 44 1 1.7589 -1.7125 -3.7900 45 1 1.7844 -0.1465 -4.6362 46 1 0.4420 -0.0501 -2.5322 47 1 1.8478 1.0421 -2.4757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:59 Heat of formation + Delta-G solvation = -43.902786 kcal Electronic energy + Delta-G solvation = -23514.666159 eV Core-core repulsion = 20310.928276 eV Total energy + Delta-G solvation = -3203.737883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.74829 -38.14885 -36.24136 -33.73741 -31.94007 -31.25768 -30.34817 -29.64729 -27.98789 -25.47465 -24.46464 -23.46387 -22.30738 -21.65392 -20.67668 -20.00156 -19.00705 -16.80720 -16.29025 -16.10665 -15.47325 -14.91911 -14.81096 -14.65129 -14.23489 -13.99719 -13.54108 -13.44442 -13.41261 -13.13989 -12.73563 -12.51717 -12.25204 -12.02428 -11.77474 -11.48804 -11.39542 -11.32277 -11.04276 -10.82872 -10.73523 -10.67192 -10.45962 -10.35438 -10.28771 -10.17217 -9.89140 -9.65334 -9.50859 -9.38463 -8.44343 -8.09214 -6.64069 -5.76620 -3.18540 3.40206 3.45567 3.47411 3.76980 4.24233 4.52181 4.57853 4.78367 4.85012 4.93436 5.13641 5.18207 5.24238 5.31467 5.38313 5.38621 5.47927 5.52715 5.56182 5.58176 5.66964 5.71031 5.80613 5.85585 5.90567 5.98020 5.99252 6.15196 6.20593 6.26800 6.36847 6.39220 6.54580 6.60672 6.67242 6.70042 6.86190 7.07485 7.08871 7.39338 7.42020 7.66142 7.70010 7.82132 8.48066 9.24205 9.87895 10.45029 11.32109 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033530 B = 0.003493 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.865524 B = 8013.159316 C = 8438.926520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.076 0.924 4 N -0.681 5.681 5 C 0.098 3.902 6 C -0.115 4.115 7 C 0.144 3.856 8 N -0.591 5.591 9 C -0.251 4.251 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.905 5.905 13 Si 0.903 3.097 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.284 1.284 17 C 0.174 3.826 18 C -0.140 4.140 19 C -0.074 4.074 20 C -0.139 4.139 21 C 0.058 3.942 22 O -0.388 6.388 23 C 0.063 3.937 24 C -0.153 4.153 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.335 0.665 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.013 0.987 33 H 0.053 0.947 34 H 0.254 0.746 35 H 0.014 0.986 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 -5.079 -19.196 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.095 0.905 4 N -0.311 5.311 5 C -0.011 4.011 6 C -0.155 4.155 7 C 0.017 3.983 8 N -0.314 5.314 9 C -0.381 4.381 10 H 0.082 0.918 11 C -0.197 4.197 12 N -0.550 5.550 13 Si 0.732 3.268 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.210 1.210 17 C 0.048 3.952 18 C -0.180 4.180 19 C -0.093 4.093 20 C -0.176 4.176 21 C -0.018 4.018 22 O -0.307 6.307 23 C -0.014 4.014 24 C -0.192 4.192 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.091 0.909 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.569 -4.908 -19.302 20.081 hybrid contribution -0.724 -0.197 1.213 1.426 sum -3.293 -5.105 -18.089 19.082 Atomic orbital electron populations 1.22553 0.97744 1.01814 1.02117 1.21566 0.91980 0.98143 0.90433 0.90531 1.60673 1.56678 1.09825 1.03961 1.21444 0.97107 0.93435 0.89130 1.21994 0.96955 0.98643 0.97881 1.20924 0.98455 0.92297 0.86577 1.44029 1.25326 1.50136 1.11910 1.19160 0.89493 1.44476 0.84938 0.91761 1.25041 0.95887 1.01482 0.97295 1.70026 1.12692 1.52926 1.19310 0.86366 0.80505 0.78543 0.81348 1.20899 1.21677 1.21017 1.20718 0.88051 0.91150 0.95287 1.22391 1.00004 0.99393 0.96216 1.21123 0.95754 0.99235 0.93187 1.22084 0.95295 1.02298 0.97970 1.22666 0.98729 0.94657 0.85780 1.87910 1.20195 1.76130 1.46426 1.22532 0.81326 0.99601 0.97961 1.22312 1.00807 1.00859 0.95186 0.92713 0.92551 0.92205 0.84730 0.94750 0.91854 0.93708 0.96932 0.92806 0.93647 0.96742 0.89431 0.93796 0.91917 0.91494 0.91537 0.89303 0.93573 0.89142 0.93532 0.89292 0.90939 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.80 37.16 0.33 -1.60 16 2 C 0.09 1.03 1.98 -67.71 -0.13 0.90 16 3 H 0.08 1.00 7.10 -51.93 -0.37 0.64 16 4 N -0.68 -9.18 5.38 -99.69 -0.54 -9.72 16 5 C 0.10 1.63 2.27 -67.67 -0.15 1.48 16 6 C -0.11 -2.06 5.57 -26.61 -0.15 -2.21 16 7 C 0.14 3.10 6.52 -3.72 -0.02 3.07 16 8 N -0.59 -14.99 2.99 -172.32 -0.52 -15.51 16 9 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 10 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 11 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 12 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 13 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 18 C -0.14 -2.66 5.36 -26.61 -0.14 -2.80 16 19 C -0.07 -0.76 2.05 -90.44 -0.19 -0.94 16 20 C -0.14 -1.53 5.22 -26.60 -0.14 -1.67 16 21 C 0.06 0.59 6.84 37.20 0.25 0.85 16 22 O -0.39 -4.43 10.77 -35.23 -0.38 -4.81 16 23 C 0.06 0.56 6.84 37.21 0.25 0.82 16 24 C -0.15 -1.39 4.97 -26.59 -0.13 -1.52 16 25 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.67 7.42 -51.93 -0.39 0.28 16 27 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 28 H 0.33 4.29 8.07 -39.29 -0.32 3.98 16 29 H 0.03 0.61 7.11 -51.93 -0.37 0.24 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.72 7.41 -51.92 -0.38 0.34 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 37 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.07 7.73 -51.93 -0.40 0.67 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.57 6.62 -51.93 -0.34 0.23 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -29.18 351.42 -9.69 -38.88 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.68 Total: 1.48 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.47 Total: -6.64 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.43 Total: -51.03 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.38 Total: -4.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.18 -9.69 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.025 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds