Wall clock time and date at job start Tue Mar 31 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47568 * 2 1 4 4 N 1.46906 * 109.47141 * 240.00247 * 2 1 3 5 5 C 1.46901 * 111.00097 * 130.04140 * 4 2 1 6 6 C 1.53038 * 109.45787 * 275.02643 * 5 4 2 7 7 C 1.53190 * 109.30911 * 178.60072 * 6 5 4 8 8 N 1.46923 * 108.76634 * 54.65790 * 7 6 5 9 9 C 1.36938 * 120.63138 * 126.36082 * 8 7 6 10 10 H 1.08001 * 120.00016 * 332.63107 * 9 8 7 11 11 C 1.38811 * 120.00305 * 152.63343 * 9 8 7 12 12 N 1.31628 * 119.99755 * 342.71431 * 11 9 8 13 13 Si 1.86793 * 120.00438 * 162.71245 * 11 9 8 14 14 H 1.48497 * 109.47302 * 90.00057 * 13 11 9 15 15 H 1.48498 * 109.47263 * 210.00054 * 13 11 9 16 16 H 1.48502 * 109.46895 * 330.00325 * 13 11 9 17 17 C 1.46927 * 118.74055 * 306.37965 * 8 7 6 18 18 C 1.53042 * 109.45820 * 154.97121 * 5 4 2 19 19 C 1.52997 * 109.46881 * 120.00123 * 2 1 3 20 20 C 1.53175 * 109.54475 * 295.99488 * 19 2 1 21 21 C 1.53095 * 109.21602 * 183.18343 * 20 19 2 22 22 O 1.42903 * 109.41579 * 57.57844 * 21 20 19 23 23 C 1.42903 * 114.09596 * 298.84720 * 22 21 20 24 24 C 1.53086 * 109.41995 * 61.15724 * 23 22 21 25 25 H 1.09006 * 109.46946 * 65.76324 * 1 2 3 26 26 H 1.09000 * 109.47412 * 185.76319 * 1 2 3 27 27 H 1.08993 * 109.47366 * 305.76948 * 1 2 3 28 28 H 1.00893 * 110.99730 * 6.08206 * 4 2 1 29 29 H 1.09002 * 109.45811 * 34.99874 * 5 4 2 30 30 H 1.08997 * 109.50051 * 298.56860 * 6 5 4 31 31 H 1.09000 * 109.49734 * 58.66312 * 6 5 4 32 32 H 1.09003 * 109.60026 * 294.86149 * 7 6 5 33 33 H 1.09001 * 109.70160 * 174.50812 * 7 6 5 34 34 H 0.96996 * 119.99792 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.58521 * 293.82426 * 17 8 7 36 36 H 1.08994 * 109.70804 * 173.46648 * 17 8 7 37 37 H 1.08996 * 109.49719 * 301.33718 * 18 5 4 38 38 H 1.08997 * 109.49366 * 61.40125 * 18 5 4 39 39 H 1.08997 * 109.61619 * 56.22067 * 19 2 1 40 40 H 1.09004 * 109.52097 * 63.24959 * 20 19 2 41 41 H 1.09001 * 109.52732 * 303.12495 * 20 19 2 42 42 H 1.09000 * 109.47972 * 177.56409 * 21 20 19 43 43 H 1.09000 * 109.48094 * 297.59733 * 21 20 19 44 44 H 1.09001 * 109.47714 * 181.13689 * 23 22 21 45 45 H 1.08998 * 109.47937 * 301.15798 * 23 22 21 46 46 H 1.08997 * 109.52605 * 62.29348 * 24 23 22 47 47 H 1.09003 * 109.52444 * 182.42890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 3.0270 0.1157 -1.8996 6 6 2.3272 1.1042 -2.8351 7 6 3.3791 1.9687 -3.5372 8 7 4.3460 1.0871 -4.2053 9 6 4.6229 1.2380 -5.5379 10 1 3.8793 1.6567 -6.1999 11 6 5.8591 0.8526 -6.0380 12 7 6.8720 0.6675 -5.2180 13 14 6.0853 0.5967 -7.8744 14 1 6.5067 1.8738 -8.5040 15 1 7.1267 -0.4364 -8.1057 16 1 4.8023 0.1492 -8.4735 17 6 5.0101 0.0403 -3.4166 18 6 3.9399 -0.8024 -2.7156 19 6 2.0399 -0.7213 1.2492 20 6 1.6142 0.0553 2.4990 21 6 2.1951 -0.6286 3.7394 22 8 3.6176 -0.6970 3.6218 23 6 4.0745 -1.4524 2.4981 24 6 3.5692 -0.8016 1.2079 25 1 -0.3633 0.4219 -0.9371 26 1 -0.3634 -1.0224 0.1032 27 1 -0.3634 0.6006 0.8338 28 1 1.2571 -0.9325 -1.8150 29 1 3.6225 0.6651 -1.1704 30 1 1.7513 0.5549 -3.5800 31 1 1.6593 1.7423 -2.2565 32 1 3.8948 2.5862 -2.8018 33 1 2.8958 2.6077 -4.2762 34 1 7.7360 0.3986 -5.5675 35 1 5.6589 0.5005 -2.6714 36 1 5.6027 -0.5953 -4.0745 37 1 4.4200 -1.5214 -2.0519 38 1 3.3486 -1.3340 -3.4612 39 1 1.6236 -1.7280 1.2861 40 1 0.5263 0.0689 2.5664 41 1 1.9881 1.0774 2.4378 42 1 1.9309 -0.0551 4.6279 43 1 1.7884 -1.6364 3.8228 44 1 5.1643 -1.4724 2.4924 45 1 3.6926 -2.4711 2.5654 46 1 3.9835 0.2027 1.1199 47 1 3.8803 -1.4003 0.3518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:01 Heat of formation + Delta-G solvation = -43.286453 kcal Electronic energy + Delta-G solvation = -23714.877241 eV Core-core repulsion = 20511.166084 eV Total energy + Delta-G solvation = -3203.711157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.72847 -38.14088 -36.19455 -33.67683 -31.90274 -31.22741 -30.45722 -29.65955 -27.98444 -25.33845 -24.47417 -23.40983 -22.14579 -21.58652 -20.91829 -20.08082 -18.99244 -16.78609 -16.30503 -16.05255 -15.39628 -14.99035 -14.77293 -14.52583 -14.14660 -13.92925 -13.63791 -13.45546 -13.31190 -13.02810 -12.76111 -12.61542 -12.20061 -12.00804 -11.72489 -11.45986 -11.38776 -11.32011 -11.03675 -10.90318 -10.70060 -10.66847 -10.48150 -10.27538 -10.19433 -10.15537 -9.95999 -9.70714 -9.52324 -9.37281 -8.46254 -8.01505 -6.65270 -5.76648 -3.18160 3.38400 3.45496 3.47923 3.83628 4.26313 4.51483 4.65162 4.82219 4.88143 4.98747 5.15899 5.22402 5.26310 5.32693 5.37031 5.44780 5.46247 5.53145 5.55016 5.63244 5.69848 5.73474 5.81790 5.88741 5.92571 5.95441 6.04025 6.11786 6.15082 6.30007 6.33608 6.43928 6.52647 6.64396 6.68061 6.72788 6.87560 6.96386 7.15717 7.39639 7.44032 7.69311 7.73651 7.81760 8.47463 9.23965 9.87658 10.44198 11.31852 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.003831 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.540675 B = 7307.595559 C = 7904.345204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 H 0.056 0.944 4 N -0.683 5.683 5 C 0.097 3.903 6 C -0.159 4.159 7 C 0.149 3.851 8 N -0.592 5.592 9 C -0.252 4.252 10 H 0.064 0.936 11 C 0.002 3.998 12 N -0.902 5.902 13 Si 0.901 3.099 14 H -0.287 1.287 15 H -0.289 1.289 16 H -0.280 1.280 17 C 0.170 3.830 18 C -0.124 4.124 19 C -0.072 4.072 20 C -0.154 4.154 21 C 0.063 3.937 22 O -0.388 6.388 23 C 0.060 3.940 24 C -0.143 4.143 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.337 0.663 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.015 0.985 33 H 0.051 0.949 34 H 0.253 0.747 35 H 0.015 0.985 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 -3.600 15.074 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 H 0.074 0.926 4 N -0.313 5.313 5 C -0.012 4.012 6 C -0.200 4.200 7 C 0.022 3.978 8 N -0.315 5.315 9 C -0.382 4.382 10 H 0.082 0.918 11 C -0.196 4.196 12 N -0.547 5.547 13 Si 0.731 3.269 14 H -0.215 1.215 15 H -0.215 1.215 16 H -0.205 1.205 17 C 0.044 3.956 18 C -0.164 4.164 19 C -0.091 4.091 20 C -0.192 4.192 21 C -0.014 4.014 22 O -0.306 6.306 23 C -0.017 4.017 24 C -0.181 4.181 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.806 -3.934 15.492 19.294 hybrid contribution -0.633 0.504 -1.583 1.777 sum -11.439 -3.430 13.909 18.333 Atomic orbital electron populations 1.22230 0.96004 1.02112 1.01843 1.21531 0.93202 0.96343 0.91123 0.92594 1.60699 1.17072 1.44928 1.08582 1.21636 0.92511 0.92774 0.94277 1.22705 0.99132 0.99186 0.98972 1.20807 0.90421 0.91777 0.94800 1.44065 1.47434 1.33135 1.06852 1.19171 0.96365 1.39182 0.83476 0.91847 1.25013 0.94918 1.02090 0.97628 1.70037 1.00413 1.50803 1.33451 0.86320 0.77435 0.77666 0.85493 1.21454 1.21532 1.20546 1.20804 0.91322 0.89903 0.93556 1.22173 0.98310 0.98012 0.97918 1.21173 0.95785 0.99174 0.92982 1.22309 1.00869 1.00571 0.95456 1.22519 0.81551 0.99573 0.97754 1.87911 1.21164 1.74175 1.47396 1.22646 0.99613 0.93815 0.85608 1.22147 0.95475 1.02224 0.98265 0.92682 0.92196 0.92206 0.84450 0.91321 0.92347 0.93801 0.96738 0.93072 0.93663 0.96647 0.89332 0.92877 0.92965 0.91148 0.91094 0.91243 0.89367 0.93529 0.89062 0.93504 0.91761 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.61 37.16 0.32 -1.25 16 2 C 0.09 1.02 2.12 -67.71 -0.14 0.88 16 3 H 0.06 0.73 7.28 -51.93 -0.38 0.35 16 4 N -0.68 -9.18 5.42 -99.70 -0.54 -9.72 16 5 C 0.10 1.60 1.79 -67.67 -0.12 1.48 16 6 C -0.16 -2.73 5.33 -26.61 -0.14 -2.88 16 7 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 8 N -0.59 -14.92 3.00 -172.32 -0.52 -15.44 16 9 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 10 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 11 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 12 N -0.90 -26.34 11.16 55.49 0.62 -25.72 16 13 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.17 4.08 5.31 -3.71 -0.02 4.06 16 18 C -0.12 -2.38 5.69 -26.61 -0.15 -2.53 16 19 C -0.07 -0.78 2.03 -90.43 -0.18 -0.97 16 20 C -0.15 -1.47 5.07 -26.59 -0.13 -1.61 16 21 C 0.06 0.61 6.84 37.21 0.25 0.86 16 22 O -0.39 -4.79 10.77 -35.23 -0.38 -5.17 16 23 C 0.06 0.68 6.84 37.20 0.25 0.93 16 24 C -0.14 -1.76 4.55 -26.59 -0.12 -1.88 16 25 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.51 6.91 -51.93 -0.36 0.15 16 28 H 0.34 4.41 7.83 -39.30 -0.31 4.10 16 29 H 0.07 1.20 7.12 -51.93 -0.37 0.83 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.67 7.97 -51.93 -0.41 0.25 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 2.38 6.01 -51.93 -0.31 2.07 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.57 6.85 -51.93 -0.36 0.22 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.88 8.03 -51.93 -0.42 0.46 16 47 H 0.09 1.21 7.48 -51.93 -0.39 0.82 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -29.12 351.88 -9.74 -38.86 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.76 Total: 2.06 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.44 Total: -6.94 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.44 Total: -50.87 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.12 -9.74 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.428 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds