Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47153 * 2 1 4 4 N 1.46904 * 109.46836 * 119.99638 * 2 1 3 5 5 C 1.46893 * 111.00175 * 275.00133 * 4 2 1 6 6 C 1.53046 * 109.45961 * 275.02916 * 5 4 2 7 7 C 1.53195 * 109.31358 * 178.60031 * 6 5 4 8 8 N 1.46933 * 108.76452 * 54.65294 * 7 6 5 9 9 C 1.36937 * 120.63107 * 126.40172 * 8 7 6 10 10 H 1.08003 * 120.00028 * 332.61512 * 9 8 7 11 11 C 1.38811 * 119.99985 * 152.60185 * 9 8 7 12 12 N 1.31616 * 119.99763 * 159.36441 * 11 9 8 13 13 Si 1.86800 * 119.99951 * 339.37465 * 11 9 8 14 14 H 1.48500 * 109.47317 * 92.90593 * 13 11 9 15 15 H 1.48503 * 109.46930 * 212.90437 * 13 11 9 16 16 H 1.48500 * 109.47272 * 332.90265 * 13 11 9 17 17 C 1.46929 * 118.73979 * 306.38843 * 8 7 6 18 18 C 1.53037 * 109.46160 * 154.97619 * 5 4 2 19 19 C 1.52996 * 109.47382 * 239.99865 * 2 1 3 20 20 H 1.08999 * 109.57855 * 185.16074 * 19 2 1 21 21 C 1.53171 * 109.52534 * 64.99807 * 19 2 1 22 22 C 1.53177 * 109.11333 * 183.06924 * 21 19 2 23 23 C 1.53284 * 109.06081 * 56.94310 * 22 21 19 24 24 O 1.42897 * 109.46176 * 302.44312 * 23 22 21 25 25 C 1.42912 * 114.09594 * 61.16170 * 24 23 22 26 26 H 1.08997 * 109.46631 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47138 * 300.00299 * 1 2 3 28 28 H 1.09000 * 109.46562 * 60.00631 * 1 2 3 29 29 H 1.00907 * 110.99517 * 151.04709 * 4 2 1 30 30 H 1.09003 * 109.46408 * 34.99832 * 5 4 2 31 31 H 1.08998 * 109.49357 * 298.56399 * 6 5 4 32 32 H 1.08993 * 109.49968 * 58.66406 * 6 5 4 33 33 H 1.09001 * 109.59702 * 294.87007 * 7 6 5 34 34 H 1.08995 * 109.58970 * 174.43451 * 7 6 5 35 35 H 0.97000 * 119.99885 * 180.02562 * 12 11 9 36 36 H 1.08998 * 109.58269 * 293.81958 * 17 8 7 37 37 H 1.09002 * 109.58590 * 173.39471 * 17 8 7 38 38 H 1.09000 * 109.49909 * 301.33579 * 18 5 4 39 39 H 1.09001 * 109.49923 * 61.43453 * 18 5 4 40 40 H 1.08999 * 109.54747 * 302.98641 * 21 19 2 41 41 H 1.09004 * 109.54010 * 63.16012 * 21 19 2 42 42 H 1.09003 * 109.52404 * 176.93190 * 22 21 19 43 43 H 1.08997 * 109.52482 * 297.12230 * 22 21 19 44 44 H 1.09003 * 109.45317 * 182.44770 * 23 22 21 45 45 H 1.09001 * 109.46644 * 62.45127 * 23 22 21 46 46 H 1.08996 * 109.47845 * 178.86051 * 25 24 23 47 47 H 1.08996 * 109.47878 * 58.82165 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2226 2.3469 6 6 3.4112 0.9815 2.3217 7 6 3.4583 1.9599 3.4997 8 7 3.2121 1.2156 4.7424 9 6 4.0888 1.2990 5.7910 10 1 5.1309 1.5159 5.6077 11 6 3.6382 1.1052 7.0895 12 7 4.4892 0.7812 8.0399 13 14 1.8241 1.3038 7.4881 14 1 1.1478 -0.0144 7.3869 15 1 1.6754 1.8317 8.8681 16 1 1.2068 2.2519 6.5262 17 6 2.0072 0.3803 4.8387 18 6 1.9762 -0.5800 3.6456 19 6 2.0401 -0.7212 -1.2492 20 1 3.1261 -0.8029 -1.2059 21 6 1.6355 0.0688 -2.4975 22 6 2.0834 -0.6998 -3.7445 23 6 1.4656 -2.1024 -3.7168 24 8 1.8565 -2.7712 -2.5160 25 6 1.4242 -2.1212 -1.3189 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8901 29 1 2.9173 -1.1205 1.0288 30 1 1.2575 0.9329 2.2905 31 1 4.2360 0.2736 2.4033 32 1 3.4968 1.5344 1.3863 33 1 2.6902 2.7226 3.3723 34 1 4.4402 2.4310 3.5444 35 1 4.1743 0.6454 8.9472 36 1 1.1207 1.0144 4.8206 37 1 2.0316 -0.1906 5.7669 38 1 1.0403 -1.1387 3.6525 39 1 2.8147 -1.2730 3.7146 40 1 0.5528 0.1933 -2.5153 41 1 2.1149 1.0476 -2.4808 42 1 1.7510 -0.1706 -4.6376 43 1 3.1703 -0.7810 -3.7515 44 1 1.8150 -2.6701 -4.5793 45 1 0.3792 -2.0215 -3.7507 46 1 1.7438 -2.7024 -0.4540 47 1 0.3372 -2.0404 -1.3214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611559537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -35.923837 kcal Electronic energy + Delta-G solvation = -23538.642332 eV Core-core repulsion = 20335.250443 eV Total energy + Delta-G solvation = -3203.391890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01352 -38.36549 -36.32386 -33.95681 -32.67323 -31.41512 -30.35420 -29.49457 -28.34013 -25.32360 -24.93918 -23.97562 -22.77812 -21.67245 -20.99807 -19.73756 -19.30498 -16.93272 -16.45054 -16.34067 -15.50266 -15.44214 -15.07449 -14.81602 -14.27392 -14.13972 -13.80745 -13.68722 -13.32591 -13.02037 -12.86365 -12.75390 -12.49134 -12.34982 -12.13990 -11.83270 -11.71460 -11.55939 -11.19482 -11.06042 -10.81549 -10.77248 -10.60616 -10.53164 -10.43864 -10.15239 -10.02533 -9.63937 -9.57662 -9.42217 -8.60648 -8.19728 -6.95561 -5.93078 -3.28514 3.34432 3.49878 3.53141 3.70008 4.11265 4.48567 4.52869 4.55161 4.64572 4.73718 4.88514 4.99209 5.05498 5.20998 5.23735 5.27966 5.31455 5.34229 5.36684 5.50949 5.52695 5.60149 5.67874 5.70790 5.72527 5.76478 5.85978 5.93057 5.97197 6.02120 6.10629 6.19614 6.24288 6.33173 6.39080 6.52792 6.63996 6.68392 6.74679 6.95487 7.01973 7.27294 7.54598 7.98860 8.34571 8.96550 9.74407 10.12599 11.23074 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038132 B = 0.003498 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.123946 B = 8003.728705 C = 8113.616556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.046 0.954 4 N -0.683 5.683 5 C 0.096 3.904 6 C -0.161 4.161 7 C 0.153 3.847 8 N -0.606 5.606 9 C -0.260 4.260 10 H 0.084 0.916 11 C 0.023 3.977 12 N -0.909 5.909 13 Si 0.884 3.116 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.272 1.272 17 C 0.126 3.874 18 C -0.118 4.118 19 C -0.121 4.121 20 H 0.077 0.923 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.059 3.941 24 O -0.386 6.386 25 C 0.068 3.932 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.339 0.661 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.102 0.898 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -2.831 -23.110 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.064 0.936 4 N -0.314 5.314 5 C -0.013 4.013 6 C -0.202 4.202 7 C 0.026 3.974 8 N -0.330 5.330 9 C -0.388 4.388 10 H 0.102 0.898 11 C -0.176 4.176 12 N -0.553 5.553 13 Si 0.715 3.285 14 H -0.215 1.215 15 H -0.232 1.232 16 H -0.197 1.197 17 C 0.000 4.000 18 C -0.158 4.158 19 C -0.141 4.141 20 H 0.095 0.905 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.018 4.018 24 O -0.304 6.304 25 C -0.008 4.008 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.121 0.879 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.566 -3.273 -22.757 24.535 hybrid contribution -0.305 1.013 0.126 1.065 sum -8.872 -2.261 -22.631 24.412 Atomic orbital electron populations 1.21931 0.94874 1.02289 1.01136 1.21435 0.95813 0.96044 0.88742 0.93569 1.60764 1.33309 1.33287 1.03996 1.21517 0.96554 0.92961 0.90307 1.22695 0.98406 1.00217 0.98877 1.20827 0.99189 0.91963 0.85406 1.44370 1.24984 1.50332 1.13320 1.18920 0.90518 1.45168 0.84174 0.89828 1.25276 0.97245 0.99598 0.95498 1.69839 1.34374 1.49106 1.01939 0.86929 0.87152 0.77957 0.76511 1.21540 1.23225 1.19663 1.21355 0.89226 0.92279 0.97177 1.21979 1.01392 0.98450 0.93969 1.21940 1.01088 0.96379 0.94649 0.90502 1.21676 1.01534 0.98750 0.93665 1.22220 1.01864 0.96766 0.98468 1.22576 0.98268 0.92912 0.88000 1.87949 1.78528 1.50013 1.13931 1.22729 0.98252 0.92585 0.87231 0.91808 0.92569 0.92822 0.84200 0.91232 0.91783 0.93298 0.96230 0.92055 0.92789 0.95958 0.90882 0.92283 0.91833 0.91370 0.91542 0.91012 0.91126 0.89237 0.93417 0.87949 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.67 37.16 0.32 -1.14 16 2 C 0.09 0.96 2.20 -67.71 -0.15 0.81 16 3 H 0.05 0.53 7.10 -51.93 -0.37 0.16 16 4 N -0.68 -8.60 5.57 -99.70 -0.56 -9.15 16 5 C 0.10 1.47 2.24 -67.67 -0.15 1.32 16 6 C -0.16 -2.60 5.31 -26.61 -0.14 -2.74 16 7 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 8 N -0.61 -14.52 2.77 -172.31 -0.48 -15.00 16 9 C -0.26 -7.34 10.04 -15.06 -0.15 -7.49 16 10 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 11 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 12 N -0.91 -28.19 13.97 55.49 0.78 -27.41 16 13 Si 0.88 22.68 24.34 -169.99 -4.14 18.54 16 14 H -0.29 -7.12 6.62 56.52 0.37 -6.75 16 15 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 16 H -0.27 -6.85 6.64 56.52 0.38 -6.48 16 17 C 0.13 2.77 4.20 -3.71 -0.02 2.75 16 18 C -0.12 -2.12 5.69 -26.61 -0.15 -2.28 16 19 C -0.12 -1.15 2.09 -90.48 -0.19 -1.34 16 20 H 0.08 0.79 8.02 -51.93 -0.42 0.38 16 21 C -0.12 -0.96 5.12 -26.55 -0.14 -1.10 16 22 C -0.16 -1.16 6.15 -26.49 -0.16 -1.32 16 23 C 0.06 0.48 6.85 37.30 0.26 0.74 16 24 O -0.39 -4.26 10.77 -35.23 -0.38 -4.64 16 25 C 0.07 0.69 5.57 37.21 0.21 0.90 16 26 H 0.06 0.65 6.29 -51.93 -0.33 0.32 16 27 H 0.06 0.63 7.43 -51.93 -0.39 0.25 16 28 H 0.05 0.46 6.51 -51.93 -0.34 0.12 16 29 H 0.34 4.21 8.03 -39.29 -0.32 3.90 16 30 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.69 7.41 -51.93 -0.38 0.30 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 37 H 0.07 1.78 4.50 -51.93 -0.23 1.54 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 1.11 7.84 -51.93 -0.41 0.70 16 47 H 0.05 0.53 6.20 -51.93 -0.32 0.20 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -30.43 341.19 -8.61 -39.04 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.40 Total: 0.80 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.58 Total: -7.32 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.26 Total: -51.56 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.38 Total: -4.64 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.43 -8.61 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611559537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.113 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds