Wall clock time and date at job start Tue Mar 31 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 N 1.46903 * 109.47078 * 120.00355 * 2 1 3 5 5 C 1.46900 * 110.99520 * 274.99813 * 4 2 1 6 6 C 1.53041 * 109.46215 * 275.06506 * 5 4 2 7 7 C 1.53186 * 109.31497 * 178.61846 * 6 5 4 8 8 N 1.46927 * 108.77146 * 54.63691 * 7 6 5 9 9 C 1.36940 * 120.63040 * 126.37316 * 8 7 6 10 10 H 1.07993 * 120.00132 * 208.02228 * 9 8 7 11 11 C 1.38821 * 119.99854 * 28.01622 * 9 8 7 12 12 N 1.31616 * 119.99957 * 17.52943 * 11 9 8 13 13 Si 1.86798 * 120.00056 * 197.52927 * 11 9 8 14 14 H 1.48494 * 109.47401 * 94.06369 * 13 11 9 15 15 H 1.48496 * 109.47196 * 214.07053 * 13 11 9 16 16 H 1.48508 * 109.47012 * 334.06509 * 13 11 9 17 17 C 1.46924 * 118.74278 * 306.38895 * 8 7 6 18 18 C 1.53043 * 109.45605 * 155.00207 * 5 4 2 19 19 C 1.52995 * 109.46958 * 240.00551 * 2 1 3 20 20 H 1.09000 * 109.52137 * 299.99812 * 19 2 1 21 21 C 1.53181 * 109.52602 * 60.12508 * 19 2 1 22 22 C 1.53174 * 109.03505 * 176.88932 * 21 19 2 23 23 C 1.53089 * 109.16321 * 303.01513 * 22 21 19 24 24 O 1.42906 * 109.41610 * 57.61655 * 23 22 21 25 25 C 1.42912 * 114.14704 * 298.87609 * 24 23 22 26 26 H 1.09008 * 109.46957 * 299.99961 * 1 2 3 27 27 H 1.08993 * 109.47581 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47056 * 59.99577 * 1 2 3 29 29 H 1.00899 * 111.00085 * 38.95225 * 4 2 1 30 30 H 1.09000 * 109.46436 * 35.03231 * 5 4 2 31 31 H 1.09001 * 109.50029 * 298.57274 * 6 5 4 32 32 H 1.09001 * 109.49031 * 58.66669 * 6 5 4 33 33 H 1.08997 * 109.58721 * 294.85409 * 7 6 5 34 34 H 1.09000 * 109.70813 * 174.49474 * 7 6 5 35 35 H 0.96994 * 120.00118 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.58679 * 293.82732 * 17 8 7 37 37 H 1.08999 * 109.70129 * 173.46650 * 17 8 7 38 38 H 1.09000 * 109.49363 * 301.33789 * 18 5 4 39 39 H 1.09002 * 109.49837 * 61.39634 * 18 5 4 40 40 H 1.09001 * 109.53942 * 296.75648 * 21 19 2 41 41 H 1.08998 * 109.54483 * 56.93083 * 21 19 2 42 42 H 1.08993 * 109.52748 * 62.92669 * 22 21 19 43 43 H 1.09007 * 109.52144 * 183.11475 * 22 21 19 44 44 H 1.09004 * 109.48272 * 177.59788 * 23 22 21 45 45 H 1.09001 * 109.48277 * 297.62854 * 23 22 21 46 46 H 1.09009 * 109.42869 * 301.10467 * 25 24 23 47 47 H 1.08997 * 109.53484 * 181.07659 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 6 3.4109 0.9821 2.3212 7 6 3.4582 1.9600 3.4993 8 7 3.2127 1.2155 4.7420 9 6 4.0901 1.2985 5.7900 10 1 4.1868 0.4734 6.4800 11 6 4.8555 2.4434 5.9654 12 7 4.5129 3.5626 5.3636 13 14 6.3715 2.3954 7.0557 14 1 7.5713 2.1251 6.2235 15 1 6.5293 3.7027 7.7420 16 1 6.2191 1.3199 8.0684 17 6 2.0080 0.3799 4.8387 18 6 1.9770 -0.5803 3.6455 19 6 2.0400 -0.7211 -1.2493 20 1 1.6771 -1.7489 -1.2502 21 6 1.5326 0.0020 -2.5008 22 6 2.1125 -0.6821 -3.7425 23 6 3.6406 -0.6801 -3.6499 24 8 4.0445 -1.3406 -2.4487 25 6 3.5708 -0.7191 -1.2521 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 1.4496 -1.4980 1.4100 30 1 1.2573 0.9325 2.2908 31 1 4.2361 0.2746 2.4023 32 1 3.4956 1.5350 1.3857 33 1 2.6897 2.7225 3.3724 34 1 4.4388 2.4336 3.5448 35 1 5.0478 4.3624 5.4858 36 1 1.1214 1.0136 4.8209 37 1 2.0305 -0.1912 5.7669 38 1 1.0413 -1.1393 3.6526 39 1 2.8154 -1.2735 3.7138 40 1 0.4441 -0.0455 -2.5331 41 1 1.8515 1.0439 -2.4744 42 1 1.7520 -1.7093 -3.7944 43 1 1.8011 -0.1403 -4.6357 44 1 4.0577 -1.2035 -4.5103 45 1 4.0028 0.3479 -3.6389 46 1 3.9331 0.3081 -1.2092 47 1 3.9367 -1.2702 -0.3858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611559538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:44 Heat of formation + Delta-G solvation = -44.078006 kcal Electronic energy + Delta-G solvation = -23590.009552 eV Core-core repulsion = 20386.264071 eV Total energy + Delta-G solvation = -3203.745481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.71672 -38.10596 -36.12532 -33.82012 -32.52688 -31.09206 -29.97675 -29.50459 -28.04848 -25.28643 -24.43175 -23.74876 -22.30754 -21.65390 -20.62255 -20.01672 -19.01647 -16.77020 -16.31935 -15.99242 -15.37040 -15.03188 -14.79932 -14.55914 -14.35669 -13.94229 -13.46798 -13.37753 -13.20621 -13.18091 -12.88301 -12.52029 -12.30408 -12.13867 -11.75937 -11.56683 -11.39676 -11.24648 -11.03309 -10.91338 -10.81138 -10.70693 -10.51701 -10.30379 -10.17389 -10.13841 -9.88454 -9.54183 -9.46198 -9.42658 -8.45207 -8.08865 -6.64627 -5.76037 -3.17940 3.40507 3.47560 3.48676 3.89745 4.23810 4.52701 4.62267 4.72549 4.79452 4.91144 5.08057 5.22777 5.25440 5.34557 5.38119 5.43509 5.46637 5.52140 5.53607 5.67738 5.70468 5.74968 5.76727 5.80523 5.87220 5.91817 5.96986 6.11531 6.18149 6.24723 6.30658 6.36465 6.47357 6.64411 6.68198 6.78445 6.81047 7.01767 7.23717 7.40939 7.43426 7.65522 7.72269 7.83422 8.48442 9.24646 9.88238 10.45051 11.32583 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.003833 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.961827 B = 7302.768876 C = 7895.194477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.089 3.911 3 H 0.078 0.922 4 N -0.683 5.683 5 C 0.097 3.903 6 C -0.124 4.124 7 C 0.171 3.829 8 N -0.591 5.591 9 C -0.251 4.251 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.148 3.852 18 C -0.133 4.133 19 C -0.106 4.106 20 H 0.075 0.925 21 C -0.120 4.120 22 C -0.154 4.154 23 C 0.058 3.942 24 O -0.387 6.387 25 C 0.074 3.926 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.334 0.666 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.013 0.987 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.014 0.986 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -7.650 -16.462 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.021 4.021 3 H 0.097 0.903 4 N -0.313 5.313 5 C -0.012 4.012 6 C -0.163 4.163 7 C 0.044 3.956 8 N -0.314 5.314 9 C -0.381 4.381 10 H 0.083 0.917 11 C -0.196 4.196 12 N -0.548 5.548 13 Si 0.732 3.268 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.204 1.204 17 C 0.021 3.979 18 C -0.172 4.172 19 C -0.125 4.125 20 H 0.093 0.907 21 C -0.158 4.158 22 C -0.192 4.192 23 C -0.019 4.019 24 O -0.305 6.305 25 C -0.002 4.002 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.454 -7.567 -16.572 19.327 hybrid contribution -0.509 0.485 0.684 0.981 sum -6.963 -7.082 -15.887 18.736 Atomic orbital electron populations 1.22527 0.97526 1.01829 1.02138 1.21520 0.92246 0.98182 0.90187 0.90333 1.60708 1.56686 1.09839 1.04048 1.21468 0.97854 0.93218 0.88616 1.22197 0.96060 0.99039 0.99041 1.20786 1.01553 0.90711 0.82507 1.44054 1.21671 1.53157 1.12533 1.19214 1.15112 0.98114 1.05666 0.91699 1.25029 1.00688 0.94652 0.99268 1.70041 1.38450 0.99425 1.46862 0.86282 0.83557 0.76879 0.80111 1.21446 1.21840 1.20398 1.20843 0.89907 0.92146 0.94990 1.22203 1.00249 0.98856 0.95931 1.21717 0.97039 1.00132 0.93628 0.90685 1.21708 1.00617 0.99476 0.94041 1.22172 0.96923 1.01671 0.98402 1.22533 0.93792 0.97366 0.88165 1.87942 1.74566 1.54021 1.14019 1.22602 0.92480 0.98167 0.86991 0.92546 0.92670 0.92155 0.84747 0.94676 0.92101 0.93895 0.96863 0.89475 0.93709 0.96813 0.92748 0.93623 0.91508 0.91450 0.91837 0.91261 0.91238 0.89422 0.93448 0.93627 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 8.80 37.16 0.33 -1.56 16 2 C 0.09 1.05 1.98 -67.71 -0.13 0.92 16 3 H 0.08 1.05 7.10 -51.93 -0.37 0.68 16 4 N -0.68 -9.21 5.35 -99.69 -0.53 -9.74 16 5 C 0.10 1.61 2.27 -67.67 -0.15 1.45 16 6 C -0.12 -2.39 5.57 -26.61 -0.15 -2.54 16 7 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 8 N -0.59 -14.94 2.99 -172.33 -0.52 -15.46 16 9 C -0.25 -6.97 9.58 -15.05 -0.14 -7.12 16 10 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 11 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 12 N -0.90 -26.43 11.22 55.49 0.62 -25.81 16 13 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.15 3.12 6.51 -3.71 -0.02 3.09 16 18 C -0.13 -2.28 5.36 -26.61 -0.14 -2.42 16 19 C -0.11 -1.16 2.16 -90.48 -0.20 -1.35 16 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.12 -1.13 4.86 -26.55 -0.13 -1.26 16 22 C -0.15 -1.33 6.14 -26.60 -0.16 -1.49 16 23 C 0.06 0.58 6.84 37.20 0.25 0.83 16 24 O -0.39 -5.05 10.76 -35.23 -0.38 -5.43 16 25 C 0.07 0.94 5.94 37.20 0.22 1.16 16 26 H 0.06 0.65 7.43 -51.92 -0.39 0.26 16 27 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 29 H 0.33 4.16 8.07 -39.29 -0.32 3.84 16 30 H 0.04 0.61 7.11 -51.93 -0.37 0.24 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.77 7.41 -51.93 -0.38 0.39 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 38 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 0.57 6.62 -51.93 -0.34 0.23 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 47 H 0.11 1.53 7.69 -51.93 -0.40 1.13 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -29.20 351.39 -9.75 -38.95 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.68 Total: 1.53 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.54 Total: -6.23 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.43 Total: -51.00 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.20 -9.75 -38.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611559538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.124 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds