Wall clock time and date at job start Tue Mar 31 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47130 * 2 1 4 4 N 1.46905 * 109.47312 * 240.00355 * 2 1 3 5 5 C 1.46896 * 111.00214 * 128.63424 * 4 2 1 6 6 C 1.53034 * 109.46478 * 273.74690 * 5 4 2 7 7 C 1.53193 * 109.31557 * 178.61340 * 6 5 4 8 8 N 1.46925 * 108.77177 * 54.63735 * 7 6 5 9 9 C 1.36939 * 120.62875 * 126.37284 * 8 7 6 10 10 H 1.08002 * 119.99258 * 208.39935 * 9 8 7 11 11 C 1.38805 * 120.00120 * 28.39889 * 9 8 7 12 12 N 1.31618 * 119.99975 * 16.84272 * 11 9 8 13 13 Si 1.86801 * 119.99857 * 196.83876 * 11 9 8 14 14 H 1.48502 * 109.47291 * 94.98842 * 13 11 9 15 15 H 1.48502 * 109.46853 * 214.98579 * 13 11 9 16 16 H 1.48497 * 109.47244 * 334.98101 * 13 11 9 17 17 C 1.46924 * 118.73921 * 306.39034 * 8 7 6 18 18 C 1.53046 * 109.45693 * 153.67802 * 5 4 2 19 19 C 1.53001 * 109.47193 * 120.00235 * 2 1 3 20 20 H 1.08995 * 109.52159 * 60.68082 * 19 2 1 21 21 C 1.53178 * 109.57288 * 300.52562 * 19 2 1 22 22 C 1.53171 * 109.03656 * 183.08471 * 21 19 2 23 23 C 1.53087 * 109.16645 * 56.97758 * 22 21 19 24 24 O 1.42901 * 109.41740 * 302.39252 * 23 22 21 25 25 C 1.42908 * 114.09654 * 61.15676 * 24 23 22 26 26 H 1.08998 * 109.47060 * 185.62241 * 1 2 3 27 27 H 1.08999 * 109.47206 * 305.62541 * 1 2 3 28 28 H 1.09002 * 109.47188 * 65.62089 * 1 2 3 29 29 H 1.00905 * 110.99626 * 252.59710 * 4 2 1 30 30 H 1.09002 * 109.46008 * 33.71203 * 5 4 2 31 31 H 1.09002 * 109.49658 * 298.56668 * 6 5 4 32 32 H 1.09004 * 109.49600 * 58.66053 * 6 5 4 33 33 H 1.09000 * 109.58694 * 294.85300 * 7 6 5 34 34 H 1.09001 * 109.58480 * 174.42388 * 7 6 5 35 35 H 0.97009 * 119.99575 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.58814 * 293.82416 * 17 8 7 37 37 H 1.09005 * 109.58666 * 173.39884 * 17 8 7 38 38 H 1.08997 * 109.49614 * 301.33747 * 18 5 4 39 39 H 1.08997 * 109.49484 * 61.40785 * 18 5 4 40 40 H 1.09010 * 109.54093 * 302.95133 * 21 19 2 41 41 H 1.08999 * 109.54476 * 63.21389 * 21 19 2 42 42 H 1.09005 * 109.52237 * 297.07097 * 22 21 19 43 43 H 1.09005 * 109.57541 * 176.91825 * 22 21 19 44 44 H 1.08993 * 109.48293 * 182.40865 * 23 22 21 45 45 H 1.09007 * 109.47721 * 62.37811 * 23 22 21 46 46 H 1.08998 * 109.48541 * 178.85886 * 25 24 23 47 47 H 1.09002 * 109.48130 * 58.82308 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.0025 0.1299 -1.9177 6 6 2.2738 1.0743 -2.8764 7 6 3.2995 1.9540 -3.5982 8 7 4.2941 1.0873 -4.2448 9 6 4.5680 1.2153 -5.5804 10 1 4.9071 0.3603 -6.1464 11 6 4.4097 2.4439 -6.2067 12 7 4.3241 3.5430 -5.4876 13 14 4.3184 2.5375 -8.0701 14 1 2.8960 2.5355 -8.4968 15 1 4.9731 3.7865 -8.5356 16 1 5.0137 1.3650 -8.6593 17 6 4.9890 0.0803 -3.4313 18 6 3.9444 -0.7784 -2.7114 19 6 2.0400 -0.7213 1.2492 20 1 1.6872 -1.7525 1.2439 21 6 1.5199 -0.0088 2.5015 22 6 2.0997 -0.6935 3.7430 23 6 3.6281 -0.6777 3.6581 24 8 4.0439 -1.3287 2.4559 25 6 3.5708 -0.7044 1.2606 26 1 -0.3633 -1.0227 0.1007 27 1 -0.3633 0.5986 0.8353 28 1 -0.3634 0.4242 -0.9360 29 1 2.4059 -1.5944 -0.9639 30 1 3.5798 0.7143 -1.2014 31 1 1.7161 0.4903 -3.6086 32 1 1.5859 1.7049 -2.3131 33 1 3.7950 2.6042 -2.8771 34 1 2.7959 2.5584 -4.3526 35 1 4.2131 4.4015 -5.9253 36 1 5.6223 0.5777 -2.6966 37 1 5.6003 -0.5516 -4.0757 38 1 4.4457 -1.4665 -2.0307 39 1 3.3709 -1.3453 -3.4448 40 1 1.8311 1.0358 2.4823 41 1 0.4318 -0.0660 2.5281 42 1 1.7480 -1.7242 3.7881 43 1 1.7790 -0.1597 4.6377 44 1 4.0454 -1.2014 4.5180 45 1 3.9812 0.3536 3.6539 46 1 3.9468 -1.2473 0.3935 47 1 3.9232 0.3265 1.2250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611559539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:47 Heat of formation + Delta-G solvation = -42.706612 kcal Electronic energy + Delta-G solvation = -23712.666855 eV Core-core repulsion = 20508.980843 eV Total energy + Delta-G solvation = -3203.686013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97124 -38.05166 -36.14516 -33.86125 -32.56378 -31.04161 -29.90184 -29.68019 -28.24314 -25.27874 -24.48428 -23.78834 -22.25484 -21.64482 -20.66990 -20.22582 -18.94195 -16.74582 -16.63844 -16.20272 -15.36024 -15.12895 -14.91019 -14.65785 -14.20823 -13.94341 -13.45799 -13.37673 -13.28341 -13.10712 -12.89142 -12.65692 -12.32461 -11.99486 -11.68096 -11.63026 -11.33816 -11.33115 -11.14944 -11.02324 -10.77551 -10.71827 -10.56730 -10.44789 -10.16835 -10.14592 -9.88490 -9.61306 -9.51320 -9.43054 -8.45298 -8.09050 -6.63383 -5.75462 -3.18004 3.40395 3.47352 3.48705 3.68334 4.26373 4.50825 4.52811 4.60034 4.67238 4.71287 4.95191 5.12585 5.23987 5.36174 5.36953 5.42559 5.44958 5.48788 5.53226 5.55341 5.67009 5.70900 5.74265 5.75252 5.84161 5.91780 5.95316 6.01605 6.12525 6.18855 6.35177 6.37671 6.47881 6.66306 6.69569 6.79452 6.83022 7.00932 7.02353 7.42444 7.44786 7.66264 7.73029 7.83757 8.49253 9.25281 9.88679 10.45673 11.33095 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.003700 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.233769 B = 7564.914511 C = 7887.038709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 H 0.068 0.932 4 N -0.684 5.684 5 C 0.097 3.903 6 C -0.124 4.124 7 C 0.171 3.829 8 N -0.591 5.591 9 C -0.251 4.251 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.148 3.852 18 C -0.135 4.135 19 C -0.141 4.141 20 H 0.081 0.919 21 C -0.115 4.115 22 C -0.156 4.156 23 C 0.058 3.942 24 O -0.382 6.382 25 C 0.063 3.937 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.334 0.666 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.015 0.985 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 -7.650 17.574 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 H 0.086 0.914 4 N -0.315 5.315 5 C -0.012 4.012 6 C -0.163 4.163 7 C 0.045 3.955 8 N -0.314 5.314 9 C -0.381 4.381 10 H 0.083 0.917 11 C -0.196 4.196 12 N -0.548 5.548 13 Si 0.732 3.268 14 H -0.215 1.215 15 H -0.218 1.218 16 H -0.204 1.204 17 C 0.021 3.979 18 C -0.175 4.175 19 C -0.161 4.161 20 H 0.100 0.900 21 C -0.154 4.154 22 C -0.193 4.193 23 C -0.019 4.019 24 O -0.300 6.300 25 C -0.014 4.014 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.136 -7.441 17.093 19.626 hybrid contribution 0.483 0.328 -0.287 0.650 sum -5.653 -7.113 16.806 19.105 Atomic orbital electron populations 1.21806 0.94680 1.01390 1.01465 1.21595 0.95952 0.97308 0.87133 0.91386 1.60719 1.41691 1.05873 1.23188 1.21583 0.91012 0.94023 0.94606 1.22199 0.98815 0.97731 0.97594 1.20792 0.88587 0.90817 0.95343 1.44050 1.42430 1.38974 1.05960 1.19213 1.41358 0.93451 0.84051 0.91716 1.25040 1.01475 0.95184 0.97948 1.70043 1.53666 0.97110 1.33985 0.86273 0.77745 0.77060 0.85710 1.21482 1.21831 1.20388 1.20853 0.92337 0.91168 0.93540 1.22242 0.98225 0.97932 0.99076 1.22417 0.96314 1.01193 0.96170 0.90032 1.21644 1.00958 0.99325 0.93424 1.22194 0.96648 1.01857 0.98635 1.22576 0.93967 0.97555 0.87765 1.87940 1.74007 1.54287 1.13792 1.22709 0.93052 0.98115 0.87551 0.92924 0.93097 0.91925 0.84673 0.94678 0.92166 0.93781 0.96841 0.89502 0.93720 0.96726 0.92706 0.93592 0.91485 0.91772 0.90949 0.91149 0.90998 0.89106 0.93275 0.88913 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.99 37.16 0.33 -1.18 16 2 C 0.09 1.09 2.18 -67.71 -0.15 0.94 16 3 H 0.07 0.91 7.32 -51.93 -0.38 0.53 16 4 N -0.68 -9.50 5.89 -99.69 -0.59 -10.08 16 5 C 0.10 1.61 1.90 -67.67 -0.13 1.49 16 6 C -0.12 -2.43 5.60 -26.61 -0.15 -2.58 16 7 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 8 N -0.59 -14.99 2.99 -172.32 -0.52 -15.51 16 9 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 10 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 11 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 12 N -0.90 -26.48 11.21 55.49 0.62 -25.86 16 13 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 18 C -0.13 -2.34 5.35 -26.61 -0.14 -2.49 16 19 C -0.14 -1.48 1.77 -90.48 -0.16 -1.64 16 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.12 -1.04 4.85 -26.55 -0.13 -1.17 16 22 C -0.16 -1.27 6.14 -26.60 -0.16 -1.43 16 23 C 0.06 0.54 6.84 37.20 0.25 0.79 16 24 O -0.38 -4.66 10.77 -35.23 -0.38 -5.04 16 25 C 0.06 0.73 5.49 37.21 0.20 0.93 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.49 6.82 -51.93 -0.35 0.13 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.33 4.30 6.84 -39.29 -0.27 4.04 16 30 H 0.04 0.61 7.32 -51.93 -0.38 0.23 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 2.36 6.08 -51.93 -0.32 2.05 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.07 0.60 6.75 -51.93 -0.35 0.25 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.09 1.13 6.93 -51.93 -0.36 0.77 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -29.45 351.40 -9.80 -39.25 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.71 Total: 1.30 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.50 Total: -6.26 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.48 Total: -51.45 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.38 Total: -5.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.45 -9.80 -39.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611559539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.461 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds