Wall clock time and date at job start Tue Mar 31 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47599 * 2 1 4 4 C 1.53000 * 109.46890 * 119.99866 * 2 1 3 5 5 C 1.53004 * 109.47393 * 64.99775 * 4 2 1 6 6 H 1.09006 * 109.47129 * 305.00312 * 5 4 2 7 7 C 1.53001 * 109.47160 * 64.99747 * 5 4 2 8 8 C 1.50698 * 109.47402 * 185.00098 * 5 4 2 9 9 O 1.21278 * 119.99724 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99701 * 180.02562 * 8 5 4 11 11 C 1.46505 * 119.99485 * 179.97438 * 10 8 5 12 12 C 1.53076 * 109.45150 * 84.78885 * 11 10 8 13 13 C 1.53183 * 109.29478 * 181.24130 * 12 11 10 14 14 N 1.46930 * 108.89468 * 305.57480 * 13 12 11 15 15 C 1.36937 * 120.63259 * 233.51494 * 14 13 12 16 16 H 1.08000 * 119.99761 * 151.83401 * 15 14 13 17 17 C 1.38806 * 120.00219 * 331.83653 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.07619 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.07294 * 17 15 14 20 20 H 1.48506 * 109.46812 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47258 * 119.99807 * 19 17 15 22 22 H 1.48499 * 109.47344 * 240.00342 * 19 17 15 23 23 C 1.46925 * 118.73328 * 53.53726 * 14 13 12 24 24 C 1.53033 * 109.45770 * 204.99541 * 11 10 8 25 25 H 1.08996 * 109.47235 * 300.00574 * 1 2 3 26 26 H 1.09001 * 109.46763 * 60.00246 * 1 2 3 27 27 H 1.08996 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47235 * 239.99426 * 2 1 3 29 29 H 1.08995 * 109.47344 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46862 * 299.99693 * 3 2 1 31 31 H 1.08996 * 109.47295 * 59.99463 * 3 2 1 32 32 H 1.08997 * 109.47435 * 305.00184 * 4 2 1 33 33 H 1.08996 * 109.47200 * 184.99678 * 4 2 1 34 34 H 1.09006 * 109.46638 * 60.00265 * 7 5 4 35 35 H 1.08996 * 109.47585 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.47490 * 300.00617 * 7 5 4 37 37 H 0.96997 * 120.00409 * 359.97438 * 10 8 5 38 38 H 1.08990 * 109.46254 * 324.97445 * 11 10 8 39 39 H 1.09005 * 109.39190 * 61.36037 * 12 11 10 40 40 H 1.09004 * 109.62337 * 301.25830 * 12 11 10 41 41 H 1.09005 * 109.58619 * 185.72200 * 13 12 11 42 42 H 1.08998 * 109.58733 * 65.43770 * 13 12 11 43 43 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.58688 * 66.18006 * 23 14 13 45 45 H 1.08996 * 109.58570 * 186.45714 * 23 14 13 46 46 H 1.09003 * 109.49897 * 58.66679 * 24 11 10 47 47 H 1.09004 * 109.50093 * 298.57148 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1881 6 1 0.5561 -2.2707 1.0528 7 6 2.3447 -2.8709 0.0128 8 6 2.0292 -2.8784 2.4724 9 8 2.5800 -2.2481 3.3500 10 7 1.7703 -4.1897 2.6452 11 6 2.1539 -4.8537 3.8936 12 6 1.0567 -4.6444 4.9402 13 6 1.4753 -5.3135 6.2531 14 7 1.7988 -6.7219 5.9873 15 6 1.2002 -7.7227 6.7052 16 1 1.0629 -8.6977 6.2614 17 6 0.7700 -7.4841 8.0031 18 7 1.2175 -6.4367 8.6628 19 14 -0.4444 -8.6493 8.8137 20 1 -0.7901 -9.7407 7.8677 21 1 0.1671 -9.2298 10.0361 22 1 -1.6751 -7.9043 9.1817 23 6 2.7770 -7.0360 4.9370 24 6 2.3425 -6.3507 3.6377 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6769 1.9562 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6053 -0.2618 2.1370 33 1 3.1262 -0.6444 1.2952 34 1 3.4237 -2.7957 0.1481 35 1 2.0567 -3.9212 -0.0305 36 1 2.0598 -2.3769 -0.9162 37 1 1.3301 -4.6939 1.9431 38 1 3.0878 -4.4273 4.2596 39 1 0.1276 -5.0901 4.5848 40 1 0.9084 -3.5774 5.1068 41 1 0.6563 -5.2558 6.9701 42 1 2.3517 -4.8074 6.6579 43 1 0.9172 -6.2702 9.5699 44 1 3.7603 -6.6697 5.2322 45 1 2.8188 -8.1148 4.7874 46 1 3.1086 -6.4959 2.8760 47 1 1.4020 -6.7826 3.2954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613184255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:35 Heat of formation + Delta-G solvation = -69.398107 kcal Electronic energy + Delta-G solvation = -23030.271011 eV Core-core repulsion = 19825.427569 eV Total energy + Delta-G solvation = -3204.843443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19641 -39.19159 -37.74032 -35.99673 -34.19221 -33.33533 -31.72831 -31.07497 -27.98342 -27.53825 -27.05630 -24.94398 -23.92695 -23.23001 -21.36691 -20.91764 -20.16066 -18.83165 -17.93881 -17.30647 -16.73621 -16.53272 -15.89612 -15.51408 -15.38016 -15.27555 -14.84733 -14.69613 -14.49047 -14.07721 -14.05639 -13.99477 -13.22565 -13.20186 -13.13170 -13.03857 -12.76088 -12.67447 -12.58975 -12.31728 -12.14767 -12.12100 -12.01471 -11.86866 -11.59409 -11.55085 -11.43940 -11.36182 -11.32095 -10.62391 -10.60475 -9.97104 -8.73096 -7.88718 -5.35637 1.46385 1.47812 1.58894 1.71102 2.24406 2.50570 3.27223 3.61954 3.71580 3.79627 3.88147 3.94982 4.06956 4.18734 4.29228 4.32359 4.42203 4.45476 4.48748 4.64855 4.74776 4.78586 4.82185 4.86191 4.90306 4.95910 5.02573 5.06054 5.06872 5.08276 5.11834 5.14994 5.24845 5.29779 5.30364 5.36443 5.44205 5.51006 5.59012 5.60825 5.62976 5.67571 6.37179 6.65871 7.11671 7.35817 7.82506 8.35630 9.18535 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033380 B = 0.003202 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.630985 B = 8742.647491 C = 9017.082929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.093 4.093 5 C -0.103 4.103 6 H 0.117 0.883 7 C -0.140 4.140 8 C 0.506 3.494 9 O -0.592 6.592 10 N -0.710 5.710 11 C 0.161 3.839 12 C -0.130 4.130 13 C 0.183 3.817 14 N -0.610 5.610 15 C -0.260 4.260 16 H 0.075 0.925 17 C -0.056 4.056 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.261 1.261 21 H -0.294 1.294 22 H -0.292 1.292 23 C 0.140 3.860 24 C -0.120 4.120 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.414 0.586 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.054 0.946 42 H -0.014 1.014 43 H 0.249 0.751 44 H 0.009 0.991 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 8.689 -23.269 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.132 4.132 5 C -0.124 4.124 6 H 0.135 0.865 7 C -0.198 4.198 8 C 0.295 3.705 9 O -0.472 6.472 10 N -0.362 5.362 11 C 0.056 3.944 12 C -0.170 4.170 13 C 0.057 3.943 14 N -0.333 5.333 15 C -0.391 4.391 16 H 0.092 0.908 17 C -0.251 4.251 18 N -0.586 5.586 19 Si 0.798 3.202 20 H -0.185 1.185 21 H -0.221 1.221 22 H -0.219 1.219 23 C 0.015 3.985 24 C -0.160 4.160 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.251 0.749 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.004 0.996 43 H 0.058 0.942 44 H 0.027 0.973 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.864 9.142 -22.510 24.311 hybrid contribution -0.516 -0.437 1.273 1.442 sum -1.380 8.705 -21.237 22.993 Atomic orbital electron populations 1.21927 0.94776 1.02303 1.01828 1.21170 0.96252 0.96131 0.97526 1.21844 1.00937 0.95959 1.01875 1.21425 1.00601 0.92859 0.98266 1.21418 1.03522 0.95844 0.91655 0.86512 1.21842 1.00014 1.01232 0.96687 1.21509 0.77394 0.82003 0.89631 1.90689 1.44518 1.65598 1.46405 1.46072 1.61343 1.09963 1.18789 1.20627 0.96499 0.93313 0.84010 1.22298 0.98917 0.98696 0.97071 1.20442 0.97081 0.83427 0.93384 1.44358 1.46684 1.01975 1.40294 1.19611 1.31821 0.93878 0.93745 0.90757 1.25908 1.02689 0.99890 0.96614 1.70221 1.45628 1.31792 1.10930 0.85162 0.78389 0.78570 0.78052 1.18502 1.22068 1.21884 1.21052 0.90733 0.98714 0.88040 1.22117 1.02903 0.92473 0.98460 0.93753 0.91558 0.91784 0.89257 0.92895 0.91416 0.93623 0.93647 0.92841 0.93128 0.90684 0.89043 0.74898 0.92990 0.91942 0.93911 0.92735 0.99585 0.94191 0.97280 0.91302 0.89017 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.96 71.98 0.64 -1.26 16 2 C -0.09 -1.28 2.78 -10.79 -0.03 -1.31 16 3 C -0.15 -2.07 9.19 71.98 0.66 -1.41 16 4 C -0.09 -1.89 3.50 30.60 0.11 -1.78 16 5 C -0.10 -1.90 2.59 -11.54 -0.03 -1.93 16 6 H 0.12 1.72 6.34 -2.38 -0.02 1.71 16 7 C -0.14 -1.77 8.85 71.98 0.64 -1.14 16 8 C 0.51 14.43 7.12 87.66 0.62 15.05 16 9 O -0.59 -23.28 15.58 -3.02 -0.05 -23.32 16 10 N -0.71 -18.48 4.97 -442.36 -2.20 -20.68 16 11 C 0.16 5.54 2.41 45.03 0.11 5.64 16 12 C -0.13 -5.33 5.66 30.68 0.17 -5.16 16 13 C 0.18 9.46 5.30 86.36 0.46 9.92 16 14 N -0.61 -31.09 3.00 -699.11 -2.09 -33.18 16 15 C -0.26 -14.34 9.58 84.03 0.81 -13.54 16 16 H 0.07 3.90 7.89 -2.91 -0.02 3.87 16 17 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 18 N -0.94 -57.46 11.20 21.65 0.24 -57.21 16 19 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 C 0.14 5.71 6.52 86.36 0.56 6.27 16 24 C -0.12 -3.70 5.55 30.67 0.17 -3.53 16 25 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.71 6.46 -2.39 -0.02 0.70 16 28 H 0.09 0.96 6.34 -2.39 -0.02 0.95 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.04 1.14 7.95 -2.39 -0.02 1.12 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 0.74 7.56 -2.39 -0.02 0.72 16 36 H 0.09 0.77 6.46 -2.39 -0.02 0.75 16 37 H 0.41 7.56 8.02 -92.71 -0.74 6.81 16 38 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 39 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.05 3.16 6.06 -2.38 -0.01 3.15 16 42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -72.03 361.33 3.42 -68.61 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.18 Total: 15.50 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.31 Total: 3.06 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.05 Total: -111.08 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.03 3.42 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613184255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.788 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds