Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47191 * 2 1 4 4 C 1.53003 * 109.47046 * 119.99937 * 2 1 3 5 5 C 1.53006 * 109.46879 * 175.00347 * 4 2 1 6 6 H 1.08994 * 109.47298 * 54.99600 * 5 4 2 7 7 C 1.52998 * 109.46916 * 294.99935 * 5 4 2 8 8 C 1.50701 * 109.46884 * 175.00187 * 5 4 2 9 9 O 1.21287 * 120.00036 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99872 * 180.02562 * 8 5 4 11 11 C 1.46507 * 119.99847 * 180.02562 * 10 8 5 12 12 C 1.53041 * 109.45666 * 275.06482 * 11 10 8 13 13 C 1.53190 * 109.31249 * 178.61806 * 12 11 10 14 14 N 1.46919 * 108.77563 * 54.62884 * 13 12 11 15 15 C 1.36946 * 120.62791 * 126.41749 * 14 13 12 16 16 H 1.08001 * 119.99718 * 331.82372 * 15 14 13 17 17 C 1.38810 * 120.00117 * 151.82357 * 15 14 13 18 18 N 1.31622 * 119.99791 * 343.08068 * 17 15 14 19 19 Si 1.86800 * 120.00151 * 163.07926 * 17 15 14 20 20 H 1.48499 * 109.47015 * 60.00031 * 19 17 15 21 21 H 1.48501 * 109.47145 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47060 * 299.99871 * 19 17 15 23 23 C 1.46921 * 118.74373 * 306.39445 * 14 13 12 24 24 C 1.53042 * 109.46005 * 154.99640 * 11 10 8 25 25 H 1.08998 * 109.47255 * 299.99859 * 1 2 3 26 26 H 1.09005 * 109.47344 * 60.00135 * 1 2 3 27 27 H 1.09001 * 109.47095 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47255 * 240.00141 * 2 1 3 29 29 H 1.08998 * 109.46906 * 59.99927 * 3 2 1 30 30 H 1.09001 * 109.47119 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46866 * 300.00158 * 3 2 1 32 32 H 1.08992 * 109.47094 * 55.00398 * 4 2 1 33 33 H 1.09002 * 109.46676 * 294.99724 * 4 2 1 34 34 H 1.09000 * 109.47614 * 60.00267 * 7 5 4 35 35 H 1.08999 * 109.47297 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47021 * 300.00219 * 7 5 4 37 37 H 0.96996 * 120.00437 * 359.97438 * 10 8 5 38 38 H 1.08996 * 109.44674 * 35.03059 * 11 10 8 39 39 H 1.09000 * 109.49517 * 298.56341 * 12 11 10 40 40 H 1.08996 * 109.49647 * 58.66163 * 12 11 10 41 41 H 1.08998 * 109.58321 * 294.84560 * 13 12 11 42 42 H 1.08995 * 109.70564 * 174.49135 * 13 12 11 43 43 H 0.96999 * 119.99934 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.58471 * 293.82056 * 23 14 13 45 45 H 1.09004 * 109.70588 * 173.46375 * 23 14 13 46 46 H 1.09005 * 109.49601 * 301.33748 * 24 11 10 47 47 H 1.09001 * 109.49579 * 61.42896 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9953 0.1612 1.0527 7 6 3.9649 -1.7250 0.0127 8 6 4.0773 -1.4302 2.4723 9 8 3.2995 -1.7387 3.3503 10 7 5.4000 -1.6224 2.6455 11 6 5.8981 -2.2054 3.8938 12 6 6.0688 -1.1013 4.9397 13 6 6.5568 -1.7193 6.2538 14 7 7.7773 -2.4928 5.9881 15 6 8.9201 -2.2615 6.7064 16 1 9.1081 -1.2824 7.1215 17 6 9.8367 -3.2856 6.9010 18 7 9.4789 -4.5362 6.6995 19 14 11.5780 -2.8890 7.4488 20 1 11.5378 -2.1899 8.7583 21 1 12.3537 -4.1482 7.5829 22 1 12.2270 -2.0136 6.4399 23 6 7.7484 -3.5194 4.9375 24 6 7.2472 -2.8813 3.6382 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.5943 -1.2917 -0.9162 35 1 5.0512 -1.8036 -0.0307 36 1 3.5344 -2.7172 0.1480 37 1 6.0221 -1.3753 1.9435 38 1 5.1851 -2.9445 4.2590 39 1 6.8003 -0.3748 4.5857 40 1 5.1125 -0.6049 5.1041 41 1 5.7870 -2.3780 6.6558 42 1 6.7739 -0.9296 6.9730 43 1 10.1194 -5.2518 6.8359 44 1 7.0758 -4.3249 5.2322 45 1 8.7515 -3.9181 4.7855 46 1 7.1295 -3.6518 2.8761 47 1 7.9675 -2.1380 3.2964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613184266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = -50.523446 kcal Electronic energy + Delta-G solvation = -22995.924174 eV Core-core repulsion = 19791.899198 eV Total energy + Delta-G solvation = -3204.024976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99627 -37.74298 -36.72320 -34.38613 -33.01251 -31.84965 -30.08397 -29.29908 -27.41441 -26.81255 -25.27328 -23.70215 -22.22646 -21.69626 -20.20468 -19.62342 -19.03191 -17.16897 -16.55989 -15.98808 -15.60409 -14.94888 -14.66297 -14.29096 -13.99366 -13.84893 -13.56817 -13.41453 -13.26578 -12.95734 -12.68540 -12.49137 -12.41030 -12.36151 -12.06933 -11.67121 -11.45470 -11.41809 -11.12108 -10.88931 -10.83584 -10.71544 -10.69590 -10.65641 -10.47396 -10.27081 -10.02969 -9.82500 -9.63905 -9.34081 -8.66160 -8.44498 -6.67808 -5.79230 -3.21545 2.85974 3.37581 3.42542 3.44035 3.45195 4.49666 4.52798 4.57017 4.67607 4.87105 4.98212 5.07328 5.21940 5.34650 5.36505 5.40457 5.44579 5.50850 5.55811 5.57816 5.62059 5.68766 5.71636 5.80614 5.88259 5.89775 5.91825 6.01396 6.09260 6.19378 6.26414 6.29637 6.37477 6.54538 6.58082 6.61675 6.81104 6.96031 7.00659 7.32307 7.60663 7.77219 7.81572 8.44930 8.47961 9.21118 9.84334 10.41615 11.29728 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043286 B = 0.003043 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.709413 B = 9200.103040 C = 9281.594936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.114 4.114 6 H 0.096 0.904 7 C -0.145 4.145 8 C 0.512 3.488 9 O -0.543 6.543 10 N -0.724 5.724 11 C 0.150 3.850 12 C -0.138 4.138 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.175 3.825 24 C -0.146 4.146 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.394 0.606 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.345 8.326 -16.170 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.208 4.208 4 C -0.132 4.132 5 C -0.135 4.135 6 H 0.114 0.886 7 C -0.202 4.202 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.374 5.374 11 C 0.047 3.953 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.794 7.935 -15.475 21.590 hybrid contribution 1.272 0.280 -0.061 1.304 sum -11.522 8.214 -15.536 21.014 Atomic orbital electron populations 1.21825 0.95227 1.01755 1.01616 1.21203 0.95765 0.96319 0.98527 1.21917 1.01116 0.96060 1.01679 1.21450 0.92524 1.01441 0.97824 1.21396 0.98017 1.00650 0.93458 0.88606 1.21823 1.01596 0.99728 0.97075 1.20631 0.82494 0.78364 0.88711 1.90690 1.55966 1.51042 1.44363 1.46371 1.07101 1.64199 1.19762 1.21025 0.96030 0.95271 0.82990 1.22362 0.99970 0.97842 0.97682 1.20868 0.89290 0.94598 0.93183 1.44083 1.07442 1.41690 1.38331 1.19156 0.96078 0.94387 1.28621 0.91701 1.25058 0.99608 0.94938 1.00065 1.70018 1.33792 0.97992 1.53011 0.86359 0.84691 0.76998 0.78645 1.20864 1.21636 1.21068 1.20730 1.01344 0.89467 0.83643 1.22528 0.94876 0.99710 1.01495 0.92641 0.92886 0.92684 0.90966 0.92618 0.92495 0.92907 0.91330 0.91079 0.91420 0.92182 0.92079 0.77222 0.90176 0.92411 0.92809 0.96234 0.92599 0.93547 0.96169 0.89070 0.92813 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.15 0.34 -0.75 16 2 C -0.10 -0.78 2.78 -90.62 -0.25 -1.03 16 3 C -0.15 -1.10 8.96 37.16 0.33 -0.76 16 4 C -0.09 -0.96 3.50 -26.73 -0.09 -1.06 16 5 C -0.11 -1.16 2.59 -91.77 -0.24 -1.40 16 6 H 0.10 0.85 6.34 -51.93 -0.33 0.52 16 7 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 8 C 0.51 7.42 7.12 -10.99 -0.08 7.34 16 9 O -0.54 -10.15 15.58 5.55 0.09 -10.06 16 10 N -0.72 -10.22 4.97 -53.76 -0.27 -10.49 16 11 C 0.15 2.66 2.41 -67.88 -0.16 2.50 16 12 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 13 C 0.15 3.23 6.52 -3.72 -0.02 3.21 16 14 N -0.59 -14.96 2.99 -172.33 -0.52 -15.48 16 15 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 19 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.17 4.13 5.30 -3.72 -0.02 4.11 16 24 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.40 6.46 -51.93 -0.34 0.06 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.84 7.95 -51.93 -0.41 0.42 16 34 H 0.07 0.45 6.46 -51.93 -0.34 0.12 16 35 H 0.06 0.46 7.56 -51.93 -0.39 0.06 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.39 4.49 8.02 -40.82 -0.33 4.16 16 38 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -31.00 361.34 -8.68 -39.68 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.63 Total: 1.31 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.39 Total: -1.42 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.16 Total: -51.54 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.00 -8.68 -39.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613184266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.840 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds