Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 120.00264 * 2 1 4 4 N 1.34777 * 119.99422 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99753 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47274 * 179.97438 * 5 4 2 7 7 H 1.09008 * 109.50234 * 54.92043 * 6 5 4 8 8 C 1.53110 * 109.50605 * 294.80109 * 6 5 4 9 9 C 1.53123 * 109.16383 * 182.40328 * 8 6 5 10 10 C 1.53033 * 109.27538 * 57.65499 * 9 8 6 11 11 N 1.46845 * 109.52570 * 300.82074 * 10 9 8 12 12 C 1.46902 * 111.00331 * 185.84195 * 11 10 9 13 13 C 1.53000 * 109.46998 * 52.00789 * 12 11 10 14 14 H 1.09004 * 109.47197 * 301.94731 * 13 12 11 15 15 C 1.53002 * 109.46953 * 61.94866 * 13 12 11 16 16 C 1.52993 * 109.47098 * 181.94926 * 13 12 11 17 17 C 1.50701 * 109.47365 * 175.00252 * 16 13 12 18 18 H 1.07996 * 119.99842 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00289 * 179.72633 * 17 16 13 20 20 N 1.31518 * 119.99890 * 0.26905 * 19 17 16 21 21 Si 1.86797 * 120.00299 * 180.27489 * 19 17 16 22 22 H 1.48497 * 109.47345 * 89.99421 * 21 19 17 23 23 H 1.48497 * 109.47104 * 209.99950 * 21 19 17 24 24 H 1.48502 * 109.46810 * 329.99402 * 21 19 17 25 25 C 1.46852 * 111.19704 * 61.74304 * 11 10 9 26 26 H 1.08995 * 109.47312 * 269.99791 * 1 2 3 27 27 H 1.09001 * 109.47025 * 29.99990 * 1 2 3 28 28 H 1.09002 * 109.47475 * 149.99590 * 1 2 3 29 29 H 0.97000 * 120.00500 * 359.97438 * 4 2 1 30 30 H 1.09003 * 109.47476 * 59.99061 * 5 4 2 31 31 H 1.09004 * 109.46866 * 299.99969 * 5 4 2 32 32 H 1.09006 * 109.52314 * 302.30810 * 8 6 5 33 33 H 1.09003 * 109.52345 * 62.50004 * 8 6 5 34 34 H 1.09009 * 109.50323 * 177.59329 * 9 8 6 35 35 H 1.08996 * 109.50418 * 297.67120 * 9 8 6 36 36 H 1.09001 * 109.46289 * 180.80336 * 10 9 8 37 37 H 1.09001 * 109.46449 * 60.84030 * 10 9 8 38 38 H 1.09002 * 109.47148 * 292.01039 * 12 11 10 39 39 H 1.08991 * 109.47263 * 172.00824 * 12 11 10 40 40 H 1.08998 * 109.46986 * 299.99285 * 15 13 12 41 41 H 1.08990 * 109.47314 * 59.99829 * 15 13 12 42 42 H 1.09006 * 109.46473 * 180.02562 * 15 13 12 43 43 H 1.08996 * 109.47684 * 54.99925 * 16 13 12 44 44 H 1.09004 * 109.47414 * 294.99881 * 16 13 12 45 45 H 0.97002 * 120.00208 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.46299 * 58.27614 * 25 11 10 47 47 H 1.08999 * 109.45952 * 178.25538 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1674 0.0000 6 6 4.1558 -2.6098 -0.0001 7 1 3.7206 -3.1495 -0.8413 8 6 3.7549 -3.2939 1.3097 9 6 4.3202 -4.7168 1.3272 10 6 5.8406 -4.6584 1.1635 11 7 6.1727 -3.9961 -0.1043 12 6 7.6183 -4.0450 -0.3611 13 6 8.1094 -5.4888 -0.2383 14 1 7.8753 -5.8690 0.7561 15 6 7.4158 -6.3548 -1.2918 16 6 9.6229 -5.5330 -0.4578 17 6 10.1249 -6.9333 -0.2163 18 1 9.4336 -7.7135 0.0660 19 6 11.4659 -7.2195 -0.3606 20 7 12.3078 -6.2692 -0.7040 21 14 12.0869 -8.9568 -0.0687 22 1 12.0415 -9.7193 -1.3422 23 1 13.4854 -8.9057 0.4281 24 1 11.2275 -9.6267 0.9402 25 6 5.6810 -2.6125 -0.1253 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6958 -2.0073 -0.0005 30 1 4.0089 -0.6540 0.8904 31 1 4.0095 -0.6529 -0.8895 32 1 4.1574 -2.7317 2.1524 33 1 2.6680 -3.3329 1.3825 34 1 4.0743 -5.1945 2.2757 35 1 3.8871 -5.2905 0.5078 36 1 6.2448 -5.6707 1.1612 37 1 6.2737 -4.0966 1.9911 38 1 8.1379 -3.4214 0.3664 39 1 7.8214 -3.6764 -1.3665 40 1 6.3375 -6.3234 -1.1353 41 1 7.6499 -5.9747 -2.2861 42 1 7.7654 -7.3835 -1.2040 43 1 10.1108 -4.8476 0.2351 44 1 9.8504 -5.2372 -1.4820 45 1 13.2512 -6.4706 -0.8059 46 1 6.1148 -2.0602 0.7083 47 1 5.9691 -2.1389 -1.0638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = -65.842749 kcal Electronic energy + Delta-G solvation = -22528.827666 eV Core-core repulsion = 19324.138395 eV Total energy + Delta-G solvation = -3204.689271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06099 -39.09288 -36.30406 -34.66140 -32.90795 -31.70607 -31.54217 -29.84725 -26.95400 -26.14503 -25.68125 -23.63900 -22.51781 -21.54431 -20.87272 -19.75319 -18.64986 -17.14755 -16.49871 -16.33517 -15.85458 -15.52307 -14.87093 -14.59568 -14.39328 -14.28350 -14.07848 -13.63235 -13.45139 -13.00525 -12.94983 -12.86447 -12.48825 -12.18189 -12.14455 -11.95171 -11.48546 -11.38070 -11.16606 -10.90585 -10.82567 -10.70207 -10.61662 -10.40868 -10.28877 -10.21116 -10.09186 -9.55736 -9.34865 -9.14887 -8.93340 -8.32722 -8.01653 -5.97600 -3.98802 2.36689 2.93842 3.32647 3.39022 3.41841 4.07425 4.46607 4.48577 4.57314 4.64888 4.74237 4.85427 5.01067 5.10707 5.24540 5.32524 5.36758 5.38168 5.43582 5.48203 5.61098 5.63398 5.67453 5.77456 5.85559 5.86376 6.01335 6.02983 6.10510 6.15887 6.21154 6.31204 6.43297 6.53810 6.66026 7.01044 7.13577 7.19866 7.20367 7.39631 7.43482 7.69307 7.85152 7.93864 8.02465 8.46215 9.07508 9.64497 11.13897 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045255 B = 0.002664 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.566855 B =10507.055604 C =10829.485611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.549 6.549 4 N -0.728 5.728 5 C 0.122 3.878 6 C -0.095 4.095 7 H 0.086 0.914 8 C -0.114 4.114 9 C -0.116 4.116 10 C 0.047 3.953 11 N -0.533 5.533 12 C 0.061 3.939 13 C -0.086 4.086 14 H 0.057 0.943 15 C -0.123 4.123 16 C 0.027 3.973 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.063 3.937 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.401 0.599 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.032 0.968 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.293 7.644 2.616 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.427 6.427 4 N -0.380 5.380 5 C -0.002 4.002 6 C -0.114 4.114 7 H 0.104 0.896 8 C -0.152 4.152 9 C -0.153 4.153 10 C -0.081 4.081 11 N -0.257 5.257 12 C -0.066 4.066 13 C -0.104 4.104 14 H 0.076 0.924 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.066 4.066 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.887 8.184 2.204 24.407 hybrid contribution 0.745 -0.884 0.788 1.399 sum -22.143 7.301 2.993 23.507 Atomic orbital electron populations 1.21882 0.91762 1.04869 1.04729 1.20824 0.90621 0.83512 0.75642 1.90737 1.70876 1.31483 1.49614 1.46115 1.07666 1.08725 1.75525 1.21390 0.79339 0.96974 1.02474 1.21409 0.96573 0.94156 0.99233 0.89596 1.21646 0.99961 0.96642 0.96934 1.21585 0.95759 0.96244 1.01750 1.22205 0.95158 1.00693 0.90003 1.61958 1.15913 1.14755 1.33060 1.22302 0.84801 0.99033 1.00440 1.21315 0.98781 0.91656 0.98680 0.92429 1.21589 0.98240 0.99980 0.98189 1.19120 0.87953 0.96962 0.97015 1.21217 0.92638 0.95139 1.46019 0.92620 1.25027 0.97145 0.96899 0.95536 1.69968 1.03148 1.32169 1.48337 0.86631 0.78054 0.85118 0.78413 1.20717 1.21335 1.19946 1.21954 0.93156 0.90379 1.01112 0.88911 0.88926 0.90186 0.76434 0.91512 0.91259 0.92149 0.92272 0.91761 0.91139 0.89330 0.95341 0.95457 0.91106 0.93995 0.94037 0.92819 0.96960 0.96540 0.93100 0.94941 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.30 36.01 0.37 -0.49 16 2 C 0.51 4.75 7.94 -10.99 -0.09 4.66 16 3 O -0.55 -7.88 17.10 5.56 0.09 -7.78 16 4 N -0.73 -5.58 5.31 -60.29 -0.32 -5.90 16 5 C 0.12 1.13 5.07 -4.04 -0.02 1.11 16 6 C -0.09 -0.87 2.39 -90.55 -0.22 -1.08 16 7 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 8 C -0.11 -0.99 5.13 -26.61 -0.14 -1.12 16 9 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 10 C 0.05 0.62 4.97 -3.84 -0.02 0.60 16 11 N -0.53 -7.50 4.08 -234.67 -0.96 -8.46 16 12 C 0.06 1.05 4.55 -3.82 -0.02 1.03 16 13 C -0.09 -1.71 1.85 -90.62 -0.17 -1.88 16 14 H 0.06 1.16 6.07 -51.93 -0.32 0.85 16 15 C -0.12 -2.32 8.79 37.16 0.33 -1.99 16 16 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 17 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 18 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.06 0.74 4.74 -3.83 -0.02 0.72 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.40 2.01 7.68 -40.82 -0.31 1.70 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.40 7.27 -51.93 -0.38 0.02 16 34 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.30 5.70 -51.93 -0.30 1.01 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.04 0.70 7.54 -51.93 -0.39 0.31 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -32.48 365.73 -9.36 -41.84 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.75 Total: -3.34 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.66 Total: -12.26 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.54 Total: -40.59 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.48 -9.36 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.003 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds