Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 120.00290 * 2 1 4 4 N 1.34781 * 120.00027 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00046 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46916 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.50123 * 54.92861 * 6 5 4 8 8 C 1.53117 * 109.50617 * 294.80468 * 6 5 4 9 9 C 1.53113 * 109.16139 * 182.40835 * 8 6 5 10 10 C 1.53032 * 109.28276 * 57.65292 * 9 8 6 11 11 N 1.46847 * 109.52195 * 300.82240 * 10 9 8 12 12 C 1.46900 * 110.99892 * 185.83875 * 11 10 9 13 13 C 1.52997 * 109.47109 * 169.73199 * 12 11 10 14 14 H 1.09007 * 109.47482 * 57.31114 * 13 12 11 15 15 C 1.53007 * 109.47170 * 297.31432 * 13 12 11 16 16 C 1.52997 * 109.47239 * 177.31172 * 13 12 11 17 17 C 1.50706 * 109.47394 * 184.99709 * 16 13 12 18 18 H 1.08006 * 119.99948 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00153 * 180.02562 * 17 16 13 20 20 N 1.31509 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47214 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.46888 * 300.00148 * 21 19 17 24 24 H 1.48502 * 109.47380 * 59.99829 * 21 19 17 25 25 C 1.46852 * 111.19774 * 61.73958 * 11 10 9 26 26 H 1.08998 * 109.47077 * 269.99673 * 1 2 3 27 27 H 1.08991 * 109.47145 * 29.99895 * 1 2 3 28 28 H 1.08996 * 109.46815 * 150.00310 * 1 2 3 29 29 H 0.96999 * 119.99821 * 359.97438 * 4 2 1 30 30 H 1.09003 * 109.46630 * 60.00065 * 5 4 2 31 31 H 1.08993 * 109.47217 * 300.00061 * 5 4 2 32 32 H 1.09001 * 109.52105 * 302.31236 * 8 6 5 33 33 H 1.09003 * 109.52561 * 62.49847 * 8 6 5 34 34 H 1.09005 * 109.50591 * 177.59982 * 9 8 6 35 35 H 1.09003 * 109.50297 * 297.70882 * 9 8 6 36 36 H 1.09001 * 109.46760 * 180.80803 * 10 9 8 37 37 H 1.09000 * 109.46243 * 60.83525 * 10 9 8 38 38 H 1.08998 * 109.47482 * 49.73133 * 12 11 10 39 39 H 1.09001 * 109.46884 * 289.72373 * 12 11 10 40 40 H 1.08993 * 109.46819 * 54.71148 * 15 13 12 41 41 H 1.08999 * 109.47026 * 174.70827 * 15 13 12 42 42 H 1.08995 * 109.46938 * 294.70877 * 15 13 12 43 43 H 1.09005 * 109.47258 * 65.00244 * 16 13 12 44 44 H 1.08995 * 109.47922 * 304.99879 * 16 13 12 45 45 H 0.97000 * 119.99824 * 0.02562 * 20 19 17 46 46 H 1.09000 * 109.45757 * 58.27742 * 25 11 10 47 47 H 1.09005 * 109.46006 * 178.25171 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1559 -2.6098 -0.0010 7 1 3.7202 -3.1498 -0.8416 8 6 3.7559 -3.2933 1.3095 9 6 4.3213 -4.7161 1.3271 10 6 5.8416 -4.6578 1.1623 11 7 6.1727 -3.9960 -0.1061 12 6 7.6181 -4.0451 -0.3638 13 6 7.8969 -3.5819 -1.7951 14 1 7.4971 -2.5777 -1.9365 15 6 7.2270 -4.5410 -2.7812 16 6 9.4068 -3.5690 -2.0420 17 6 9.6877 -2.9971 -3.4077 18 1 8.8709 -2.6747 -4.0366 19 6 10.9873 -2.8855 -3.8544 20 7 11.9819 -3.2776 -3.0886 21 14 11.3355 -2.1760 -5.5470 22 1 12.8008 -2.1648 -5.7872 23 1 10.6715 -3.0111 -6.5799 24 1 10.8107 -0.7887 -5.6198 25 6 5.6810 -2.6124 -0.1273 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6959 -2.0073 -0.0005 30 1 4.0095 -0.6536 0.8889 31 1 4.0089 -0.6532 -0.8910 32 1 4.1590 -2.7307 2.1516 33 1 2.6691 -3.3323 1.3831 34 1 4.0761 -5.1935 2.2759 35 1 3.8882 -5.2900 0.5078 36 1 6.2459 -5.6701 1.1601 37 1 6.2753 -4.0956 1.9893 38 1 7.9755 -5.0669 -0.2365 39 1 8.1346 -3.3895 0.3373 40 1 6.1660 -4.6220 -2.5452 41 1 7.3456 -4.1604 -3.7956 42 1 7.6923 -5.5237 -2.7051 43 1 9.7925 -4.5871 -1.9881 44 1 9.8938 -2.9554 -1.2841 45 1 11.8011 -3.6457 -2.2095 46 1 6.1155 -2.0599 0.7058 47 1 5.9684 -2.1392 -1.0662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -71.371492 kcal Electronic energy + Delta-G solvation = -22750.771076 eV Core-core repulsion = 19545.842061 eV Total energy + Delta-G solvation = -3204.929015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03824 -39.09028 -36.24034 -34.86967 -33.07611 -31.94436 -31.24684 -29.88509 -26.54529 -26.09850 -25.77147 -23.71123 -22.42098 -21.53978 -20.84882 -19.79396 -19.01394 -17.16276 -16.72365 -16.34782 -15.84160 -15.52325 -14.94653 -14.63728 -14.39905 -14.10083 -13.70409 -13.62858 -13.52474 -13.20697 -13.01067 -12.86381 -12.77437 -12.26987 -12.02232 -11.77024 -11.70675 -11.34128 -11.20946 -10.98954 -10.90609 -10.67594 -10.58927 -10.52185 -10.17000 -10.09410 -10.06238 -9.65382 -9.40261 -9.29881 -8.44970 -8.27262 -8.09461 -6.30044 -3.97978 2.41675 2.97859 3.47198 3.49152 3.67572 4.00776 4.48245 4.57631 4.59093 4.63100 4.71327 4.87887 5.02652 5.04295 5.18241 5.29776 5.38236 5.41986 5.46354 5.46686 5.53858 5.58313 5.63243 5.72572 5.79460 5.80908 5.96422 5.97796 6.03907 6.08721 6.16943 6.26636 6.31790 6.45197 6.61202 6.91209 7.05909 7.12352 7.24286 7.31010 7.33040 7.44911 7.62066 7.98946 8.29559 8.52963 8.95193 9.73430 11.10429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017102 B = 0.003488 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.826207 B = 8024.842692 C = 9247.701356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.548 6.548 4 N -0.728 5.728 5 C 0.122 3.878 6 C -0.095 4.095 7 H 0.086 0.914 8 C -0.114 4.114 9 C -0.115 4.115 10 C 0.053 3.947 11 N -0.532 5.532 12 C 0.061 3.939 13 C -0.074 4.074 14 H 0.057 0.943 15 C -0.120 4.120 16 C 0.014 3.986 17 C -0.593 4.593 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 1.067 2.933 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.061 3.939 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.400 0.600 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.027 0.973 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.038 0.962 43 H 0.006 0.994 44 H 0.002 0.998 45 H 0.267 0.733 46 H 0.032 0.968 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.906 -1.379 9.900 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.293 3.707 3 O -0.425 6.425 4 N -0.381 5.381 5 C -0.002 4.002 6 C -0.114 4.114 7 H 0.105 0.895 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.075 4.075 11 N -0.256 5.256 12 C -0.066 4.066 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.178 4.178 16 C -0.024 4.024 17 C -0.631 4.631 18 H 0.068 0.932 19 C -0.191 4.191 20 N -0.553 5.553 21 Si 0.895 3.105 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.068 4.068 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.235 0.765 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.466 -0.500 8.472 23.083 hybrid contribution -0.982 -0.407 1.793 2.084 sum -22.448 -0.907 10.264 24.700 Atomic orbital electron populations 1.21879 0.91781 1.04886 1.04660 1.20824 0.90606 0.83531 0.75707 1.90746 1.70849 1.31464 1.49463 1.46106 1.07650 1.08684 1.75613 1.21390 0.79284 0.96891 1.02677 1.21413 0.96643 0.94312 0.99000 0.89546 1.21643 1.00048 0.96361 0.97139 1.21563 0.95410 0.96595 1.01674 1.22083 0.95707 0.99269 0.90476 1.61909 1.15832 1.15782 1.32094 1.22305 0.85226 1.00800 0.98307 1.21089 0.98590 0.98259 0.91347 0.92497 1.21550 0.98626 0.98417 0.99177 1.19259 0.89904 0.96080 0.97114 1.22026 0.94608 1.44897 1.01564 0.93250 1.25814 0.92633 0.95906 1.04723 1.70780 1.33684 1.39700 1.11135 0.83577 0.76055 0.76132 0.74725 1.20872 1.21484 1.21504 1.22028 0.92882 0.89927 1.01939 0.88963 0.88901 0.90210 0.76527 0.91508 0.91016 0.92141 0.92159 0.91801 0.91065 0.90906 0.95359 0.91275 0.95466 0.93598 0.92983 0.94266 0.97545 0.97948 0.92216 0.94963 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.30 36.01 0.37 -0.60 16 2 C 0.51 5.17 7.94 -10.98 -0.09 5.09 16 3 O -0.55 -8.42 17.10 5.56 0.10 -8.32 16 4 N -0.73 -6.17 5.31 -60.29 -0.32 -6.49 16 5 C 0.12 1.27 5.07 -4.04 -0.02 1.25 16 6 C -0.09 -0.94 2.39 -90.54 -0.22 -1.16 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 8 C -0.11 -0.97 5.13 -26.61 -0.14 -1.11 16 9 C -0.11 -1.04 6.09 -26.66 -0.16 -1.20 16 10 C 0.05 0.61 5.46 -3.84 -0.02 0.59 16 11 N -0.53 -7.47 3.92 -234.67 -0.92 -8.39 16 12 C 0.06 1.04 4.37 -3.83 -0.02 1.02 16 13 C -0.07 -1.51 2.23 -90.62 -0.20 -1.72 16 14 H 0.06 1.20 6.32 -51.92 -0.33 0.87 16 15 C -0.12 -2.34 8.85 37.16 0.33 -2.01 16 16 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 17 C -0.59 -16.91 8.47 -34.44 -0.29 -17.20 16 18 H 0.05 1.39 7.06 -52.48 -0.37 1.02 16 19 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 20 N -0.92 -28.49 13.65 55.43 0.76 -27.74 16 21 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.06 0.80 4.58 -3.83 -0.02 0.78 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.40 2.24 7.68 -40.82 -0.31 1.92 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.40 7.27 -51.93 -0.38 0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 1.18 7.98 -51.93 -0.41 0.76 16 39 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.04 0.79 7.53 -51.93 -0.39 0.40 16 41 H 0.05 1.09 7.11 -51.93 -0.37 0.72 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 44 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 45 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 46 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 1.27 6.17 -51.93 -0.32 0.95 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -33.69 365.51 -9.36 -43.05 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -8.72 Total: -2.52 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.67 Total: -15.76 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.48 Total: -42.62 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.10 Total: -8.32 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.69 -9.36 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.325 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds