Wall clock time and date at job start Tue Mar 31 2020 05:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47424 * 2 1 4 4 C 1.53008 * 109.46872 * 240.00095 * 2 1 3 5 5 C 1.50699 * 109.46853 * 65.00053 * 4 2 1 6 6 H 1.07996 * 120.00160 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99840 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99801 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00277 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46926 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47113 * 119.99552 * 9 7 5 12 12 H 1.48492 * 109.47137 * 239.99780 * 9 7 5 13 13 C 1.53002 * 109.47097 * 120.00663 * 2 1 3 14 14 N 1.46906 * 109.46984 * 298.04837 * 13 2 1 15 15 C 1.46853 * 110.99848 * 307.99138 * 14 13 2 16 16 C 1.53028 * 109.52212 * 174.15728 * 15 14 13 17 17 C 1.53119 * 109.27846 * 59.18506 * 16 15 14 18 18 C 1.53130 * 109.15790 * 302.34368 * 17 16 15 19 19 H 1.08994 * 109.53303 * 297.69143 * 18 17 16 20 20 C 1.53002 * 109.50222 * 177.59479 * 18 17 16 21 21 C 1.53001 * 109.47117 * 65.19685 * 20 18 17 22 22 C 1.50702 * 109.47232 * 179.97438 * 21 20 18 23 23 N 1.34773 * 120.00128 * 179.72182 * 22 21 20 24 24 O 1.21282 * 119.99319 * 0.02562 * 22 21 20 25 25 C 1.46841 * 110.99831 * 183.78541 * 14 13 2 26 26 H 1.08997 * 109.47198 * 59.99762 * 1 2 3 27 27 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46812 * 299.99487 * 1 2 3 29 29 H 1.09000 * 109.47088 * 185.00563 * 4 2 1 30 30 H 1.09003 * 109.46974 * 305.00273 * 4 2 1 31 31 H 0.97005 * 119.99574 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47044 * 178.05022 * 13 2 1 33 33 H 1.08997 * 109.47664 * 58.04878 * 13 2 1 34 34 H 1.08998 * 109.46214 * 294.17839 * 15 14 13 35 35 H 1.09005 * 109.45990 * 54.15561 * 15 14 13 36 36 H 1.09007 * 109.50052 * 179.12013 * 16 15 14 37 37 H 1.08998 * 109.51088 * 299.20318 * 16 15 14 38 38 H 1.08998 * 109.52564 * 182.43921 * 17 16 15 39 39 H 1.09000 * 109.52307 * 62.24356 * 17 16 15 40 40 H 1.08992 * 109.47123 * 305.19724 * 20 18 17 41 41 H 1.09002 * 109.46692 * 185.19553 * 20 18 17 42 42 H 1.09001 * 109.47283 * 59.99424 * 21 20 18 43 43 H 1.09005 * 109.46994 * 300.00001 * 21 20 18 44 44 H 0.97002 * 119.99851 * 0.02562 * 23 22 21 45 45 H 0.97000 * 119.99951 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.46796 * 65.82357 * 25 14 13 47 47 H 1.09001 * 109.46448 * 305.84811 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9922 -0.4021 -3.7284 8 7 2.6753 -1.5192 -3.8512 9 14 1.4986 0.5630 -5.2497 10 1 0.7422 1.7746 -4.8434 11 1 2.7169 0.9668 -5.9965 12 1 0.6439 -0.2854 -6.1184 13 6 2.0400 -0.7214 1.2492 14 7 1.5892 -0.0023 2.4483 15 6 1.9368 1.4223 2.3693 16 6 1.3272 2.1642 3.5608 17 6 1.8644 1.5600 4.8612 18 6 1.5314 0.0657 4.8962 19 1 0.4495 -0.0667 4.8914 20 6 2.1168 -0.5585 6.1644 21 6 1.4229 0.0349 7.3921 22 6 1.9991 -0.5804 8.6413 23 7 1.5414 -0.2028 9.8514 24 8 2.8785 -1.4114 8.5578 25 6 2.1350 -0.6154 3.6658 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.1263 -0.7996 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9225 -1.8421 -4.7319 32 1 3.1294 -0.7518 1.2319 33 1 1.6484 -1.7385 1.2668 34 1 3.0210 1.5332 2.3885 35 1 1.5453 1.8408 1.4421 36 1 1.5985 3.2188 3.5103 37 1 0.2420 2.0660 3.5343 38 1 1.3998 2.0567 5.7129 39 1 2.9453 1.6934 4.9056 40 1 3.1850 -0.3476 6.2135 41 1 1.9599 -1.6370 6.1442 42 1 0.3546 -0.1759 7.3431 43 1 1.5798 1.1135 7.4122 44 1 0.8409 0.4648 9.9183 45 1 1.9126 -0.5986 10.6554 46 1 3.2183 -0.4949 3.6789 47 1 1.8875 -1.6768 3.6804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:23 Heat of formation + Delta-G solvation = -99.299191 kcal Electronic energy + Delta-G solvation = -22497.721307 eV Core-core repulsion = 19291.581256 eV Total energy + Delta-G solvation = -3206.140051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73683 -40.09722 -37.50564 -35.37940 -34.59105 -33.99339 -32.80829 -30.58734 -28.84213 -27.43192 -25.86612 -25.14778 -23.56025 -22.58753 -21.13368 -20.57925 -20.16742 -18.53018 -18.15440 -17.59188 -16.89347 -16.55840 -16.35265 -16.01597 -15.84517 -15.12919 -15.00568 -14.91871 -14.59904 -14.32362 -14.16054 -13.78987 -13.43889 -13.33011 -13.03029 -12.88542 -12.75478 -12.67017 -12.53528 -12.20586 -12.08969 -11.96000 -11.78086 -11.61181 -11.39171 -11.22888 -11.13338 -10.97296 -10.93153 -10.71234 -10.59128 -10.53477 -9.19333 -8.17526 -6.26881 1.39981 1.40234 1.53543 1.71936 2.41841 2.67717 3.03286 3.15811 3.77873 3.89980 3.94286 4.10090 4.16812 4.19770 4.32366 4.36375 4.49837 4.52469 4.57836 4.61544 4.71779 4.82528 4.83440 4.88425 4.93823 4.97410 4.99511 5.04648 5.10433 5.21052 5.25737 5.30492 5.34387 5.44335 5.49675 5.51519 5.56374 5.62805 5.81102 5.88289 5.95632 6.15241 6.28400 6.32695 6.54259 6.89276 7.41397 7.43045 8.94904 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.002650 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.434752 B =10564.060095 C =10908.073509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 H 0.057 0.943 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.062 0.938 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.071 3.929 14 N -0.530 5.530 15 C 0.043 3.957 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.071 4.071 19 H 0.088 0.912 20 C -0.094 4.094 21 C -0.133 4.133 22 C 0.508 3.492 23 N -0.841 5.841 24 O -0.603 6.603 25 C 0.056 3.944 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.068 0.932 29 H -0.019 1.019 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.011 0.989 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.419 0.581 45 H 0.403 0.597 46 H 0.018 0.982 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 8.788 27.038 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.006 4.006 5 C -0.563 4.563 6 H 0.081 0.919 7 C -0.203 4.203 8 N -0.578 5.578 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.057 4.057 14 N -0.254 5.254 15 C -0.084 4.084 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.090 4.090 19 H 0.106 0.894 20 C -0.133 4.133 21 C -0.173 4.173 22 C 0.295 3.705 23 N -0.404 5.404 24 O -0.484 6.484 25 C -0.072 4.072 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.000 1.000 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.251 0.749 45 H 0.234 0.766 46 H 0.036 0.964 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.333 8.159 26.708 28.636 hybrid contribution 1.156 -0.129 -0.998 1.532 sum -5.177 8.030 25.710 27.428 Atomic orbital electron populations 1.21464 0.94295 1.00498 1.00543 1.21109 0.97001 0.98441 0.92793 0.92425 1.19025 0.93856 0.94766 0.92943 1.21643 1.34239 1.08511 0.91909 0.91934 1.26000 0.95316 0.96149 1.02801 1.70124 1.40412 1.23044 1.24195 0.85420 0.78031 0.78905 0.78838 1.18366 1.20627 1.20529 1.22031 0.95976 0.97778 0.89916 1.61997 1.59349 1.02679 1.01336 1.22276 0.97288 0.88433 1.00440 1.21564 1.01218 0.98842 0.93079 1.21705 1.00623 0.94563 0.98122 1.21112 1.01081 0.95114 0.91688 0.89358 1.21237 0.99497 0.99788 0.92736 1.21721 1.02668 1.02875 0.90027 1.21283 0.81238 0.80886 0.87098 1.43801 1.43094 1.46001 1.07522 1.90747 1.33580 1.35941 1.88129 1.22181 0.96056 0.98806 0.90154 0.94242 0.94594 0.91313 1.00021 0.99242 0.92982 0.97068 0.91750 0.96539 0.91034 0.90361 0.90719 0.88781 0.93014 0.93069 0.92801 0.86197 0.86067 0.74918 0.76611 0.96392 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 8.79 71.98 0.63 -3.63 16 2 C -0.07 -3.15 1.85 -10.79 -0.02 -3.17 16 3 H 0.06 2.43 6.07 -2.39 -0.01 2.41 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.52 -30.13 8.41 25.60 0.22 -29.92 16 6 H 0.06 3.44 7.06 -2.91 -0.02 3.42 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -58.37 13.29 21.45 0.28 -58.08 16 9 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.07 2.62 4.55 86.30 0.39 3.01 16 14 N -0.53 -15.65 4.08 -896.35 -3.66 -19.31 16 15 C 0.04 1.18 4.97 86.32 0.43 1.60 16 16 C -0.11 -2.06 6.09 30.64 0.19 -1.87 16 17 C -0.11 -1.74 4.98 30.68 0.15 -1.59 16 18 C -0.07 -1.28 2.35 -10.74 -0.03 -1.30 16 19 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 20 C -0.09 -1.64 3.97 30.60 0.12 -1.51 16 21 C -0.13 -1.36 5.46 29.85 0.16 -1.20 16 22 C 0.51 7.86 8.10 87.66 0.71 8.57 16 23 N -0.84 -5.66 8.87 -173.53 -1.54 -7.20 16 24 O -0.60 -16.31 16.82 -3.04 -0.05 -16.36 16 25 C 0.06 1.43 4.74 86.33 0.41 1.84 16 26 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 2.27 7.55 -2.39 -0.02 2.25 16 29 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 2.15 5.70 -2.38 -0.01 2.14 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 0.88 6.70 -2.39 -0.02 0.86 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 41 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 42 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.12 0.65 6.63 -2.38 -0.02 0.64 16 44 H 0.42 -0.24 8.83 -92.71 -0.82 -1.06 16 45 H 0.40 2.51 8.93 -92.71 -0.83 1.68 16 46 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 Total: -1.00 -75.07 362.82 0.32 -74.75 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -0.70 Total: 6.35 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.96 Total: -27.20 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -4.92 Total: -84.59 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.05 Total: -16.36 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.07 0.32 -74.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.550 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds