Wall clock time and date at job start Tue Mar 31 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46560 * 2 1 4 4 C 1.52994 * 109.47548 * 239.99935 * 2 1 3 5 5 C 1.50703 * 109.47422 * 64.99701 * 4 2 1 6 6 H 1.08006 * 119.99286 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00592 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99760 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46988 * 60.00400 * 9 7 5 11 11 H 1.48507 * 109.46755 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47397 * 299.99961 * 9 7 5 13 13 C 1.53003 * 109.46741 * 119.99733 * 2 1 3 14 14 N 1.46905 * 109.46861 * 183.78583 * 13 2 1 15 15 C 1.46842 * 110.99986 * 75.79516 * 14 13 2 16 16 C 1.53041 * 109.52496 * 185.83792 * 15 14 13 17 17 C 1.53118 * 109.27875 * 300.82632 * 16 15 14 18 18 C 1.53115 * 109.21433 * 57.61839 * 17 16 15 19 19 H 1.09005 * 109.50166 * 62.31771 * 18 17 16 20 20 C 1.53002 * 109.50450 * 182.43902 * 18 17 16 21 21 C 1.53000 * 109.46584 * 294.99990 * 20 18 17 22 22 C 1.50704 * 109.46736 * 180.02562 * 21 20 18 23 23 N 1.34773 * 119.99791 * 180.02562 * 22 21 20 24 24 O 1.21281 * 120.00120 * 359.97438 * 22 21 20 25 25 C 1.46842 * 110.99827 * 200.00759 * 14 13 2 26 26 H 1.08998 * 109.47262 * 54.56719 * 1 2 3 27 27 H 1.09012 * 109.46923 * 174.56000 * 1 2 3 28 28 H 1.08993 * 109.47935 * 294.55935 * 1 2 3 29 29 H 1.08996 * 109.47654 * 185.00101 * 4 2 1 30 30 H 1.09003 * 109.46898 * 305.00326 * 4 2 1 31 31 H 0.96991 * 119.99857 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47165 * 63.78712 * 13 2 1 33 33 H 1.08996 * 109.47372 * 303.78702 * 13 2 1 34 34 H 1.08997 * 109.46476 * 65.82411 * 15 14 13 35 35 H 1.08999 * 109.46674 * 305.85892 * 15 14 13 36 36 H 1.09003 * 109.50253 * 180.87975 * 16 15 14 37 37 H 1.09000 * 109.49758 * 60.76457 * 16 15 14 38 38 H 1.08997 * 109.52254 * 177.56031 * 17 16 15 39 39 H 1.09007 * 109.52035 * 297.68281 * 17 16 15 40 40 H 1.08995 * 109.47059 * 54.99777 * 20 18 17 41 41 H 1.08998 * 109.47141 * 175.00487 * 20 18 17 42 42 H 1.08997 * 109.47758 * 299.99732 * 21 20 18 43 43 H 1.09003 * 109.47438 * 60.00420 * 21 20 18 44 44 H 0.96998 * 120.00823 * 359.97438 * 23 22 21 45 45 H 0.97006 * 119.99872 * 179.97438 * 23 22 21 46 46 H 1.08994 * 109.46210 * 294.17268 * 25 14 13 47 47 H 1.09000 * 109.46631 * 54.15830 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9925 -0.4023 -3.7283 8 7 2.6749 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 2.0920 1.9227 -5.1871 11 1 1.9939 -0.1374 -6.4621 12 1 0.0191 0.6704 -5.3091 13 6 2.0399 -0.7212 1.2493 14 7 3.5061 -0.6425 1.2959 15 6 3.9484 0.6940 1.7134 16 6 5.4727 0.7836 1.6108 17 6 6.1035 -0.2861 2.5065 18 6 5.5892 -1.6649 2.0834 19 1 5.8965 -1.8688 1.0576 20 6 6.1681 -2.7333 3.0130 21 6 7.6864 -2.7958 2.8348 22 6 8.2566 -3.8487 3.7500 23 7 9.5840 -4.0814 3.7649 24 8 7.5211 -4.4859 4.4738 25 6 4.0613 -1.6830 2.1709 26 1 -0.3634 0.5958 -0.8373 27 1 -0.3633 -1.0232 -0.0974 28 1 -0.3635 0.4271 0.9346 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9215 -1.8431 -4.7317 32 1 1.7330 -1.7666 1.2161 33 1 1.6222 -0.2481 2.1380 34 1 3.6428 0.8722 2.7444 35 1 3.4960 1.4451 1.0658 36 1 5.8019 1.7707 1.9355 37 1 5.7781 0.6193 0.5774 38 1 7.1881 -0.2544 2.4033 39 1 5.8308 -0.0986 3.5451 40 1 5.9337 -2.4809 4.0470 41 1 5.7334 -3.7024 2.7679 42 1 7.9210 -3.0482 1.8008 43 1 8.1213 -1.8268 3.0799 44 1 10.1724 -3.5716 3.1864 45 1 9.9511 -4.7589 4.3543 46 1 3.7552 -1.4937 3.1997 47 1 3.6912 -2.6585 1.8554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:26 Heat of formation + Delta-G solvation = -76.436220 kcal Electronic energy + Delta-G solvation = -22790.016504 eV Core-core repulsion = 19584.867866 eV Total energy + Delta-G solvation = -3205.148638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83021 -38.91046 -35.94787 -33.96773 -33.78224 -32.31658 -31.40160 -29.62479 -26.94892 -25.84418 -24.82737 -23.11892 -22.36176 -21.42679 -20.30226 -19.49008 -18.64895 -17.53533 -16.85711 -16.22349 -15.75992 -15.53031 -14.81922 -14.42060 -14.21239 -14.11624 -14.02308 -13.70143 -13.16822 -13.00807 -12.62530 -12.47550 -12.05188 -11.87941 -11.77471 -11.44679 -11.18747 -11.12828 -10.85295 -10.80465 -10.77437 -10.49996 -10.44746 -10.27442 -10.16824 -10.02755 -9.94185 -9.82742 -9.54510 -8.98816 -8.79739 -8.19343 -7.69912 -5.84360 -3.84411 2.44862 3.30465 3.40072 3.44428 3.46830 4.27608 4.57051 4.62090 4.77229 4.87295 5.04899 5.09918 5.18238 5.40902 5.50847 5.51655 5.61920 5.67618 5.74979 5.75996 5.82459 5.85494 5.95826 6.02508 6.08403 6.14732 6.16546 6.27664 6.33610 6.39235 6.41743 6.47449 6.50731 6.60105 6.64810 7.04870 7.05912 7.11341 7.37641 7.62477 7.66738 7.90267 8.03821 8.13564 8.27305 8.62562 9.23540 9.77269 11.26727 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.003447 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.604739 B = 8120.096337 C = 8728.329451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.050 0.950 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.065 3.935 14 N -0.525 5.525 15 C 0.058 3.942 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.086 4.086 19 H 0.084 0.916 20 C -0.097 4.097 21 C -0.143 4.143 22 C 0.515 3.485 23 N -0.861 5.861 24 O -0.545 6.545 25 C 0.065 3.935 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.007 0.993 31 H 0.257 0.743 32 H 0.066 0.934 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.401 0.599 45 H 0.398 0.602 46 H 0.024 0.976 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.253 0.035 15.168 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.072 0.928 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.068 0.932 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.062 4.062 14 N -0.248 5.248 15 C -0.070 4.070 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.105 4.105 19 H 0.102 0.898 20 C -0.136 4.136 21 C -0.182 4.182 22 C 0.301 3.699 23 N -0.425 5.425 24 O -0.421 6.421 25 C -0.064 4.064 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.229 0.771 45 H 0.228 0.772 46 H 0.042 0.958 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.859 -0.472 14.955 19.092 hybrid contribution -0.025 0.594 -0.213 0.632 sum 11.834 0.123 14.741 18.904 Atomic orbital electron populations 1.21702 0.96620 1.01183 0.99496 1.21202 0.93977 0.99196 0.95731 0.92767 1.19024 0.97450 0.94343 0.89154 1.21298 1.34206 1.08080 0.91462 0.93158 1.24979 0.95561 0.95089 0.98788 1.69967 1.39293 1.21170 1.23084 0.86791 0.78760 0.80204 0.82978 1.20465 1.21479 1.20495 1.22241 0.85882 1.00761 0.97326 1.61758 1.09613 1.02702 1.50744 1.22065 0.95495 0.91756 0.97655 1.21582 0.95060 0.97815 1.01070 1.21668 0.99541 0.94873 0.99055 1.21224 0.94990 0.94048 1.00205 0.89761 1.21342 0.92219 0.99795 1.00225 1.21753 0.98359 0.98137 0.99999 1.20924 0.82102 0.83918 0.82984 1.43958 1.08526 1.43397 1.46601 1.90748 1.58901 1.50124 1.42339 1.22054 0.94161 0.96053 0.94095 0.92115 0.93550 0.95417 0.94809 0.97427 0.93292 0.91593 0.96414 0.96060 0.90383 0.92137 0.90635 0.92187 0.92675 0.91509 0.91021 0.88484 0.88650 0.77060 0.77153 0.95812 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.91 37.16 0.33 -2.21 16 2 C -0.08 -1.71 2.39 -90.62 -0.22 -1.92 16 3 H 0.05 1.15 6.73 -51.93 -0.35 0.80 16 4 C 0.04 0.97 4.39 -27.88 -0.12 0.85 16 5 C -0.51 -14.53 8.48 -34.44 -0.29 -14.82 16 6 H 0.05 1.39 7.06 -52.48 -0.37 1.02 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.88 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.07 1.16 4.41 -3.82 -0.02 1.15 16 14 N -0.52 -8.89 3.90 -234.67 -0.92 -9.81 16 15 C 0.06 0.88 5.29 -3.83 -0.02 0.86 16 16 C -0.12 -1.51 6.10 -26.65 -0.16 -1.67 16 17 C -0.11 -1.25 4.97 -26.61 -0.13 -1.38 16 18 C -0.09 -1.05 2.35 -90.53 -0.21 -1.27 16 19 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 20 C -0.10 -1.07 3.98 -26.73 -0.11 -1.18 16 21 C -0.14 -1.21 5.46 -27.88 -0.15 -1.36 16 22 C 0.52 5.15 8.10 -10.99 -0.09 5.06 16 23 N -0.86 -5.15 8.87 31.22 0.28 -4.87 16 24 O -0.54 -7.98 16.82 5.56 0.09 -7.88 16 25 C 0.06 0.94 4.71 -3.83 -0.02 0.92 16 26 H 0.06 1.23 7.12 -51.93 -0.37 0.87 16 27 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.95 7.58 -51.93 -0.39 0.55 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 33 H 0.02 0.29 8.00 -51.93 -0.42 -0.12 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 1.27 6.66 -51.93 -0.35 0.92 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.64 6.62 -51.93 -0.34 0.29 16 44 H 0.40 1.19 8.83 -40.82 -0.36 0.83 16 45 H 0.40 2.09 8.93 -40.82 -0.36 1.73 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -33.65 364.60 -9.32 -42.97 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.68 Total: -0.88 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -1.31 Total: -15.45 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.10 Total: -41.22 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.65 -9.32 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.465 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds