Wall clock time and date at job start Tue Mar 31 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46560 * 2 1 4 4 C 1.52994 * 109.47548 * 239.99935 * 2 1 3 5 5 C 1.50703 * 109.47422 * 64.99701 * 4 2 1 6 6 H 1.08006 * 119.99286 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00592 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99760 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46988 * 60.00400 * 9 7 5 11 11 H 1.48507 * 109.46755 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47397 * 299.99961 * 9 7 5 13 13 C 1.53003 * 109.46741 * 119.99733 * 2 1 3 14 14 N 1.46905 * 109.46861 * 183.78583 * 13 2 1 15 15 C 1.46842 * 110.99986 * 75.79516 * 14 13 2 16 16 C 1.53041 * 109.52496 * 185.83792 * 15 14 13 17 17 C 1.53118 * 109.27875 * 300.82632 * 16 15 14 18 18 C 1.53115 * 109.21433 * 57.61839 * 17 16 15 19 19 H 1.09005 * 109.50166 * 62.31771 * 18 17 16 20 20 C 1.53002 * 109.50450 * 182.43902 * 18 17 16 21 21 C 1.53000 * 109.46584 * 294.99990 * 20 18 17 22 22 C 1.50704 * 109.46736 * 180.02562 * 21 20 18 23 23 N 1.34773 * 119.99791 * 180.02562 * 22 21 20 24 24 O 1.21281 * 120.00120 * 359.97438 * 22 21 20 25 25 C 1.46842 * 110.99827 * 200.00759 * 14 13 2 26 26 H 1.08998 * 109.47262 * 54.56719 * 1 2 3 27 27 H 1.09012 * 109.46923 * 174.56000 * 1 2 3 28 28 H 1.08993 * 109.47935 * 294.55935 * 1 2 3 29 29 H 1.08996 * 109.47654 * 185.00101 * 4 2 1 30 30 H 1.09003 * 109.46898 * 305.00326 * 4 2 1 31 31 H 0.96991 * 119.99857 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47165 * 63.78712 * 13 2 1 33 33 H 1.08996 * 109.47372 * 303.78702 * 13 2 1 34 34 H 1.08997 * 109.46476 * 65.82411 * 15 14 13 35 35 H 1.08999 * 109.46674 * 305.85892 * 15 14 13 36 36 H 1.09003 * 109.50253 * 180.87975 * 16 15 14 37 37 H 1.09000 * 109.49758 * 60.76457 * 16 15 14 38 38 H 1.08997 * 109.52254 * 177.56031 * 17 16 15 39 39 H 1.09007 * 109.52035 * 297.68281 * 17 16 15 40 40 H 1.08995 * 109.47059 * 54.99777 * 20 18 17 41 41 H 1.08998 * 109.47141 * 175.00487 * 20 18 17 42 42 H 1.08997 * 109.47758 * 299.99732 * 21 20 18 43 43 H 1.09003 * 109.47438 * 60.00420 * 21 20 18 44 44 H 0.96998 * 120.00823 * 359.97438 * 23 22 21 45 45 H 0.97006 * 119.99872 * 179.97438 * 23 22 21 46 46 H 1.08994 * 109.46210 * 294.17268 * 25 14 13 47 47 H 1.09000 * 109.46631 * 54.15830 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9925 -0.4023 -3.7283 8 7 2.6749 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 2.0920 1.9227 -5.1871 11 1 1.9939 -0.1374 -6.4621 12 1 0.0191 0.6704 -5.3091 13 6 2.0399 -0.7212 1.2493 14 7 3.5061 -0.6425 1.2959 15 6 3.9484 0.6940 1.7134 16 6 5.4727 0.7836 1.6108 17 6 6.1035 -0.2861 2.5065 18 6 5.5892 -1.6649 2.0834 19 1 5.8965 -1.8688 1.0576 20 6 6.1681 -2.7333 3.0130 21 6 7.6864 -2.7958 2.8348 22 6 8.2566 -3.8487 3.7500 23 7 9.5840 -4.0814 3.7649 24 8 7.5211 -4.4859 4.4738 25 6 4.0613 -1.6830 2.1709 26 1 -0.3634 0.5958 -0.8373 27 1 -0.3633 -1.0232 -0.0974 28 1 -0.3635 0.4271 0.9346 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9215 -1.8431 -4.7317 32 1 1.7330 -1.7666 1.2161 33 1 1.6222 -0.2481 2.1380 34 1 3.6428 0.8722 2.7444 35 1 3.4960 1.4451 1.0658 36 1 5.8019 1.7707 1.9355 37 1 5.7781 0.6193 0.5774 38 1 7.1881 -0.2544 2.4033 39 1 5.8308 -0.0986 3.5451 40 1 5.9337 -2.4809 4.0470 41 1 5.7334 -3.7024 2.7679 42 1 7.9210 -3.0482 1.8008 43 1 8.1213 -1.8268 3.0799 44 1 10.1724 -3.5716 3.1864 45 1 9.9511 -4.7589 4.3543 46 1 3.7552 -1.4937 3.1997 47 1 3.6912 -2.6585 1.8554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:26 Heat of formation + Delta-G solvation = -99.788484 kcal Electronic energy + Delta-G solvation = -22791.029134 eV Core-core repulsion = 19584.867866 eV Total energy + Delta-G solvation = -3206.161268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71162 -40.01616 -37.40729 -35.31704 -34.59602 -34.06293 -32.75776 -30.58964 -28.99015 -27.20075 -25.82233 -24.95236 -23.68107 -22.53820 -21.12653 -20.54008 -20.30605 -18.42623 -18.16541 -17.62236 -16.76720 -16.58019 -16.54526 -15.93171 -15.47563 -15.18715 -15.07475 -14.78501 -14.65481 -14.24913 -14.11804 -13.68781 -13.53903 -13.26581 -12.97355 -12.94475 -12.73411 -12.71670 -12.47795 -12.22806 -12.09389 -12.01584 -11.80101 -11.52108 -11.43998 -11.21870 -11.04495 -10.95398 -10.86695 -10.74920 -10.60674 -10.43481 -8.99972 -8.08217 -6.16655 1.41314 1.44110 1.51488 1.69676 2.46742 2.66339 3.08506 3.24205 3.78019 3.89981 3.94846 4.08097 4.18834 4.20807 4.33249 4.40602 4.48865 4.56953 4.57874 4.61659 4.70675 4.77887 4.80814 4.85239 4.90907 4.94058 4.96018 5.02951 5.09815 5.18100 5.25501 5.32250 5.36672 5.46393 5.47085 5.53601 5.62760 5.69202 5.94379 5.97430 6.07184 6.35458 6.38207 6.42957 6.51529 7.01566 7.40649 7.50068 9.03060 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.003447 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.604739 B = 8120.096337 C = 8728.329451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.051 0.949 4 C 0.051 3.949 5 C -0.528 4.528 6 H 0.055 0.945 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.073 3.927 14 N -0.550 5.550 15 C 0.057 3.943 16 C -0.115 4.115 17 C -0.107 4.107 18 C -0.078 4.078 19 H 0.066 0.934 20 C -0.090 4.090 21 C -0.137 4.137 22 C 0.512 3.488 23 N -0.840 5.840 24 O -0.600 6.600 25 C 0.064 3.936 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.003 0.997 30 H -0.026 1.026 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.419 0.581 45 H 0.404 0.596 46 H 0.034 0.966 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.290 1.744 15.915 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 H 0.069 0.931 4 C 0.013 3.987 5 C -0.567 4.567 6 H 0.073 0.927 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.055 4.055 14 N -0.275 5.275 15 C -0.071 4.071 16 C -0.153 4.153 17 C -0.144 4.144 18 C -0.097 4.097 19 H 0.084 0.916 20 C -0.128 4.128 21 C -0.176 4.176 22 C 0.298 3.702 23 N -0.404 5.404 24 O -0.481 6.481 25 C -0.064 4.064 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.022 0.978 30 H -0.008 1.008 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.128 0.872 43 H 0.141 0.859 44 H 0.250 0.750 45 H 0.235 0.765 46 H 0.052 0.948 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.944 1.261 15.695 20.383 hybrid contribution -0.314 0.038 -0.451 0.551 sum 12.630 1.299 15.244 19.839 Atomic orbital electron populations 1.21627 0.95192 1.00870 1.00781 1.21049 0.95180 0.98483 0.94667 0.93057 1.18803 0.95311 0.93059 0.91485 1.21703 1.34041 1.08365 0.92555 0.92668 1.25891 0.95480 0.96096 1.02358 1.70119 1.40479 1.22895 1.23919 0.85655 0.78781 0.78887 0.78619 1.19350 1.21109 1.19480 1.22058 0.86998 0.99893 0.96551 1.61714 1.09049 1.04333 1.52358 1.22112 0.97021 0.90102 0.97871 1.21574 0.93524 0.99850 1.00308 1.21647 1.01017 0.92764 0.98980 1.21133 0.93337 0.95702 0.99547 0.91590 1.21202 0.94157 0.98092 0.99376 1.21731 0.96331 0.99134 1.00441 1.21166 0.82909 0.83646 0.82474 1.43787 1.07481 1.42973 1.46157 1.90732 1.60415 1.52206 1.44712 1.22088 0.95795 0.94536 0.93980 0.93567 0.94138 0.91837 0.97833 1.00757 0.93229 0.92551 0.94100 0.94552 0.92202 0.89769 0.92938 0.89405 0.91556 0.91926 0.93169 0.87173 0.85893 0.74997 0.76483 0.94785 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.91 71.98 0.64 -4.17 16 2 C -0.07 -3.15 2.39 -10.79 -0.03 -3.17 16 3 H 0.05 2.18 6.73 -2.39 -0.02 2.17 16 4 C 0.05 2.74 4.39 29.85 0.13 2.87 16 5 C -0.53 -30.59 8.48 25.60 0.22 -30.37 16 6 H 0.06 3.07 7.06 -2.91 -0.02 3.05 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 8 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 9 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 C 0.07 2.60 4.41 86.30 0.38 2.98 16 14 N -0.55 -18.88 3.90 -896.35 -3.50 -22.38 16 15 C 0.06 1.65 5.29 86.33 0.46 2.11 16 16 C -0.11 -2.77 6.10 30.65 0.19 -2.58 16 17 C -0.11 -2.08 4.97 30.67 0.15 -1.93 16 18 C -0.08 -1.88 2.35 -10.74 -0.03 -1.90 16 19 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 20 C -0.09 -1.93 3.98 30.60 0.12 -1.81 16 21 C -0.14 -2.05 5.46 29.85 0.16 -1.89 16 22 C 0.51 9.56 8.10 87.66 0.71 10.27 16 23 N -0.84 -8.26 8.87 -173.53 -1.54 -9.80 16 24 O -0.60 -17.58 16.82 -3.03 -0.05 -17.63 16 25 C 0.06 1.87 4.71 86.33 0.41 2.28 16 26 H 0.05 1.85 7.12 -2.39 -0.02 1.84 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.00 0.19 7.58 -2.39 -0.02 0.18 16 30 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 31 H 0.26 15.30 8.31 -92.72 -0.77 14.53 16 32 H 0.06 2.09 7.79 -2.39 -0.02 2.07 16 33 H 0.04 1.28 8.00 -2.39 -0.02 1.26 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.94 6.66 -2.39 -0.02 1.92 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.26 6.70 -2.39 -0.02 1.24 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 41 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.12 1.18 6.62 -2.39 -0.02 1.16 16 44 H 0.42 1.26 8.83 -92.71 -0.82 0.45 16 45 H 0.40 3.51 8.93 -92.70 -0.83 2.69 16 46 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 1.80 7.93 -2.39 -0.02 1.78 16 Total: -1.00 -75.47 364.60 0.50 -74.97 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.71 Total: 12.43 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.98 Total: -26.92 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -4.75 Total: -90.22 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -75.47 0.50 -74.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.819 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds