Wall clock time and date at job start Tue Mar 31 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46776 * 2 1 4 4 C 1.53006 * 109.46922 * 119.99073 * 2 1 3 5 5 C 1.50695 * 109.47466 * 295.00225 * 4 2 1 6 6 H 1.07999 * 120.00031 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99641 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 120.00116 * 0.27833 * 7 5 4 10 10 H 1.48503 * 109.47232 * 269.72277 * 9 7 5 11 11 H 1.48499 * 109.47338 * 29.72039 * 9 7 5 12 12 H 1.48503 * 109.47301 * 149.72341 * 9 7 5 13 13 C 1.52995 * 109.47418 * 239.99354 * 2 1 3 14 14 N 1.46898 * 109.47270 * 174.79640 * 13 2 1 15 15 C 1.46852 * 111.00279 * 288.32668 * 14 13 2 16 16 C 1.53033 * 109.52233 * 174.15850 * 15 14 13 17 17 C 1.53119 * 109.28162 * 59.18013 * 16 15 14 18 18 C 1.53116 * 109.15698 * 302.34115 * 17 16 15 19 19 H 1.09000 * 109.54227 * 297.69412 * 18 17 16 20 20 C 1.52999 * 109.50254 * 177.59388 * 18 17 16 21 21 C 1.52998 * 109.47098 * 65.19970 * 20 18 17 22 22 C 1.50697 * 109.47158 * 179.97438 * 21 20 18 23 23 N 1.34782 * 119.99815 * 179.97438 * 22 21 20 24 24 O 1.21285 * 120.00175 * 0.02562 * 22 21 20 25 25 C 1.46844 * 111.00334 * 164.10950 * 14 13 2 26 26 H 1.08997 * 109.46862 * 65.41686 * 1 2 3 27 27 H 1.08999 * 109.46538 * 185.41608 * 1 2 3 28 28 H 1.08997 * 109.47009 * 305.41638 * 1 2 3 29 29 H 1.09000 * 109.47132 * 175.00254 * 4 2 1 30 30 H 1.09000 * 109.46659 * 55.00764 * 4 2 1 31 31 H 0.97008 * 119.99788 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46996 * 294.79602 * 13 2 1 33 33 H 1.08996 * 109.46722 * 54.79868 * 13 2 1 34 34 H 1.09003 * 109.45859 * 294.17179 * 15 14 13 35 35 H 1.08997 * 109.46001 * 54.13937 * 15 14 13 36 36 H 1.08995 * 109.50705 * 299.23357 * 16 15 14 37 37 H 1.09004 * 109.53194 * 179.13749 * 16 15 14 38 38 H 1.08999 * 109.52221 * 182.44072 * 17 16 15 39 39 H 1.09000 * 109.52191 * 62.24693 * 17 16 15 40 40 H 1.08999 * 109.47449 * 185.19771 * 20 18 17 41 41 H 1.08995 * 109.47477 * 305.19904 * 20 18 17 42 42 H 1.08996 * 109.47047 * 299.99742 * 21 20 18 43 43 H 1.09004 * 109.47030 * 59.99838 * 21 20 18 44 44 H 0.96994 * 120.00290 * 0.02562 * 23 22 21 45 45 H 0.96998 * 119.99706 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.46170 * 305.86111 * 25 14 13 47 47 H 1.09004 * 109.45755 * 65.83889 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0799 0.9744 2.3757 7 6 1.9923 -0.4019 3.7284 8 7 1.6439 0.2772 4.7994 9 14 2.9687 -1.9847 3.9028 10 1 2.0339 -3.1323 4.0230 11 1 3.8287 -2.1702 2.7064 12 1 3.8198 -1.9101 5.1175 13 6 2.0401 -0.7214 -1.2491 14 7 3.5037 -0.6135 -1.3135 15 6 3.9163 0.7546 -1.6522 16 6 5.4403 0.8648 -1.5678 17 6 6.0741 -0.1347 -2.5394 18 6 5.5904 -1.5460 -2.1950 19 1 5.9181 -1.8084 -1.1891 20 6 6.1717 -2.5442 -3.1982 21 6 7.6931 -2.5942 -3.0447 22 6 8.2656 -3.5778 -4.0324 23 7 9.5960 -3.7883 -4.0798 24 8 7.5293 -4.1794 -4.7854 25 6 4.0619 -1.5865 -2.2612 26 1 -0.3633 0.4275 -0.9345 27 1 -0.3632 -1.0231 0.0970 28 1 -0.3633 0.5955 0.8375 29 1 3.1263 -0.7993 1.2058 30 1 1.6054 -1.7197 1.2953 31 1 1.8912 -0.0456 5.6802 32 1 1.7549 -1.7723 -1.2036 33 1 1.6027 -0.2642 -2.1366 34 1 3.5905 0.9918 -2.6650 35 1 3.4620 1.4549 -0.9513 36 1 5.7657 0.6411 -0.5519 37 1 5.7478 1.8761 -1.8341 38 1 7.1596 -0.0900 -2.4512 39 1 5.7801 0.1124 -3.5595 40 1 5.7548 -3.5335 -3.0096 41 1 5.9188 -2.2305 -4.2110 42 1 8.1100 -1.6049 -3.2334 43 1 7.9460 -2.9079 -2.0319 44 1 10.1850 -3.3070 -3.4778 45 1 9.9645 -4.4218 -4.7153 46 1 3.7135 -2.5864 -2.0025 47 1 3.7356 -1.3381 -3.2711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:29 Heat of formation + Delta-G solvation = -73.631070 kcal Electronic energy + Delta-G solvation = -22877.791530 eV Core-core repulsion = 19672.764532 eV Total energy + Delta-G solvation = -3205.026998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91711 -39.02645 -36.10319 -34.04802 -33.85981 -32.33764 -31.52928 -29.72877 -27.60072 -25.94038 -24.92627 -23.00306 -22.29708 -21.42444 -20.37939 -19.60091 -18.70454 -17.61332 -16.95258 -16.62967 -15.85159 -15.65823 -14.91918 -14.50182 -14.27365 -14.18146 -13.94745 -13.73495 -13.31619 -13.14046 -12.69147 -12.56179 -12.27623 -12.11507 -11.87092 -11.66431 -11.33948 -11.23693 -10.97757 -10.89831 -10.81755 -10.58960 -10.56205 -10.27309 -10.13435 -10.03218 -9.99471 -9.61165 -9.58715 -9.31746 -8.88516 -8.39991 -7.85702 -5.91461 -3.86520 2.36974 3.22723 3.40470 3.47354 3.55809 4.16170 4.53131 4.58434 4.67459 4.76868 4.95717 5.00632 5.09419 5.30556 5.42303 5.44005 5.50713 5.57549 5.64744 5.66521 5.71863 5.75298 5.86409 5.91056 6.00492 6.03767 6.05737 6.19606 6.23934 6.28062 6.31269 6.38138 6.43472 6.49941 6.54260 6.90672 6.98517 7.03539 7.17407 7.46810 7.49866 7.58729 7.76131 7.96245 7.97713 8.69319 9.14928 9.73190 11.22324 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003826 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.530650 B = 7317.225429 C = 8057.978952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 H 0.061 0.939 4 C -0.001 4.001 5 C -0.509 4.509 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.911 5.911 9 Si 0.877 3.123 10 H -0.281 1.281 11 H -0.261 1.261 12 H -0.292 1.292 13 C 0.062 3.938 14 N -0.529 5.529 15 C 0.056 3.944 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.086 4.086 19 H 0.082 0.918 20 C -0.098 4.098 21 C -0.143 4.143 22 C 0.515 3.485 23 N -0.861 5.861 24 O -0.544 6.544 25 C 0.063 3.937 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.003 0.997 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.401 0.599 45 H 0.399 0.601 46 H 0.072 0.928 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.538 -3.519 -17.880 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.079 0.921 4 C -0.038 4.038 5 C -0.547 4.547 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.551 5.551 9 Si 0.704 3.296 10 H -0.207 1.207 11 H -0.185 1.185 12 H -0.218 1.218 13 C -0.065 4.065 14 N -0.253 5.253 15 C -0.072 4.072 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.105 4.105 19 H 0.100 0.900 20 C -0.136 4.136 21 C -0.183 4.183 22 C 0.301 3.699 23 N -0.425 5.425 24 O -0.421 6.421 25 C -0.065 4.065 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.230 0.770 45 H 0.229 0.771 46 H 0.090 0.910 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 14.093 -3.918 -17.634 22.911 hybrid contribution 0.688 -0.682 -0.441 1.064 sum 14.781 -4.600 -18.074 23.798 Atomic orbital electron populations 1.21708 0.96102 1.01309 1.00033 1.21029 0.94411 0.99336 0.94461 0.92052 1.19530 0.97171 0.94790 0.92343 1.21241 1.34669 1.09361 0.89476 0.91278 1.25011 0.95767 0.96929 0.95969 1.69934 1.47776 1.39452 0.97926 0.86813 0.80822 0.84306 0.77624 1.20694 1.18519 1.21816 1.22275 0.85892 1.00809 0.97552 1.61790 1.10415 1.04201 1.48908 1.22094 0.95614 0.90868 0.98586 1.21583 0.95079 0.98329 1.00560 1.21676 0.99664 0.94787 0.99065 1.21229 0.95040 0.94510 0.99730 0.89973 1.21347 0.92202 1.00179 0.99890 1.21749 0.98291 0.99056 0.99165 1.20911 0.82160 0.82766 0.84109 1.43957 1.08215 1.47697 1.42588 1.90752 1.59007 1.49713 1.42627 1.22059 0.94121 0.96684 0.93633 0.95127 0.93596 0.91574 0.94985 0.97854 0.93062 0.91507 0.96053 0.95837 0.90004 0.90741 0.91939 0.92124 0.92534 0.91083 0.91390 0.88580 0.88572 0.77048 0.77107 0.90983 0.95533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.91 37.16 0.33 -2.18 16 2 C -0.07 -1.46 2.35 -90.62 -0.21 -1.67 16 3 H 0.06 1.26 6.48 -51.93 -0.34 0.92 16 4 C 0.00 -0.02 3.46 -27.88 -0.10 -0.12 16 5 C -0.51 -14.56 9.03 -34.44 -0.31 -14.87 16 6 H 0.07 2.12 7.30 -52.49 -0.38 1.73 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 9 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 C 0.06 1.04 4.36 -3.83 -0.02 1.02 16 14 N -0.53 -8.40 3.99 -234.68 -0.94 -9.34 16 15 C 0.06 0.81 5.31 -3.83 -0.02 0.79 16 16 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 17 C -0.11 -1.17 4.98 -26.61 -0.13 -1.30 16 18 C -0.09 -0.97 2.35 -90.54 -0.21 -1.18 16 19 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.10 -0.99 3.97 -26.73 -0.11 -1.10 16 21 C -0.14 -1.10 5.46 -27.89 -0.15 -1.25 16 22 C 0.51 4.82 8.10 -10.98 -0.09 4.73 16 23 N -0.86 -4.67 8.87 31.22 0.28 -4.40 16 24 O -0.54 -7.64 16.82 5.55 0.09 -7.54 16 25 C 0.06 0.85 4.73 -3.83 -0.02 0.83 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.37 7.11 -51.93 -0.37 1.00 16 29 H 0.03 0.80 6.67 -51.93 -0.35 0.45 16 30 H 0.00 0.08 7.58 -51.93 -0.39 -0.32 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 33 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 1.29 6.41 -51.93 -0.33 0.96 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.51 6.70 -51.93 -0.35 0.16 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.10 0.58 6.63 -51.93 -0.34 0.23 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.40 0.98 8.83 -40.82 -0.36 0.62 16 45 H 0.40 1.89 8.93 -40.82 -0.36 1.53 16 46 H 0.07 0.99 7.96 -51.93 -0.41 0.57 16 47 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -34.29 360.75 -8.96 -43.24 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.63 Total: -1.13 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.30 Total: -16.14 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.11 Total: -41.54 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.54 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.29 -8.96 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.387 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds