Wall clock time and date at job start Tue Mar 31 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46750 * 2 1 4 4 C 1.52999 * 109.47146 * 119.99290 * 2 1 3 5 5 C 1.50693 * 109.47642 * 295.00600 * 4 2 1 6 6 H 1.08007 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00202 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00412 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99833 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47090 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46892 * 120.00266 * 9 7 5 12 12 H 1.48498 * 109.46769 * 239.99867 * 9 7 5 13 13 C 1.52998 * 109.47553 * 239.99959 * 2 1 3 14 14 N 1.46901 * 109.47232 * 61.94164 * 13 2 1 15 15 C 1.46849 * 110.99863 * 52.01246 * 14 13 2 16 16 C 1.53040 * 109.52249 * 185.84002 * 15 14 13 17 17 C 1.53118 * 109.27795 * 300.81842 * 16 15 14 18 18 C 1.53115 * 109.15825 * 57.65682 * 17 16 15 19 19 H 1.08998 * 109.50521 * 62.28659 * 18 17 16 20 20 C 1.53009 * 109.50319 * 182.40403 * 18 17 16 21 21 C 1.52993 * 109.46752 * 294.80626 * 20 18 17 22 22 C 1.50702 * 109.46825 * 180.02562 * 21 20 18 23 23 N 1.34777 * 120.00184 * 179.97438 * 22 21 20 24 24 O 1.21281 * 120.00200 * 359.97438 * 22 21 20 25 25 C 1.46848 * 110.99951 * 176.21970 * 14 13 2 26 26 H 1.08997 * 109.47365 * 300.00321 * 1 2 3 27 27 H 1.09004 * 109.46975 * 60.00844 * 1 2 3 28 28 H 1.09003 * 109.46750 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46804 * 55.00419 * 4 2 1 30 30 H 1.08996 * 109.46907 * 174.99967 * 4 2 1 31 31 H 0.96995 * 120.00399 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47338 * 181.94367 * 13 2 1 33 33 H 1.09001 * 109.47116 * 301.94251 * 13 2 1 34 34 H 1.09003 * 109.46328 * 305.85774 * 15 14 13 35 35 H 1.09000 * 109.46266 * 65.82263 * 15 14 13 36 36 H 1.09003 * 109.49900 * 180.87816 * 16 15 14 37 37 H 1.08993 * 109.53592 * 60.78031 * 16 15 14 38 38 H 1.09005 * 109.52504 * 297.75118 * 17 16 15 39 39 H 1.08999 * 109.52105 * 177.56147 * 17 16 15 40 40 H 1.09002 * 109.46687 * 54.80552 * 20 18 17 41 41 H 1.08999 * 109.47030 * 174.79844 * 20 18 17 42 42 H 1.09004 * 109.47240 * 299.98958 * 21 20 18 43 43 H 1.08999 * 109.47991 * 59.99806 * 21 20 18 44 44 H 0.96997 * 119.99971 * 359.97438 * 23 22 21 45 45 H 0.97002 * 120.00404 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.46437 * 294.17731 * 25 14 13 47 47 H 1.08996 * 109.46215 * 54.16148 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0798 0.9743 2.3757 7 6 1.9923 -0.4020 3.7283 8 7 2.6756 -1.5190 3.8513 9 14 1.4986 0.5632 5.2496 10 1 0.7431 1.7753 4.8432 11 1 0.6440 -0.2854 6.1184 12 1 2.7169 0.9670 5.9965 13 6 2.0401 -0.7212 -1.2492 14 7 1.5892 -0.0022 -2.4482 15 6 1.9367 1.4224 -2.3693 16 6 1.3270 2.1643 -3.5609 17 6 1.8641 1.5600 -4.8612 18 6 1.5313 0.0659 -4.8962 19 1 0.4493 -0.0661 -4.8910 20 6 2.1168 -0.5584 -6.1645 21 6 1.4228 0.0350 -7.3920 22 6 1.9990 -0.5803 -8.6412 23 7 1.5371 -0.2072 -9.8511 24 8 2.8785 -1.4113 -8.5578 25 6 2.1351 -0.6152 -3.6658 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7197 1.2953 30 1 3.1263 -0.7993 1.2056 31 1 2.9222 -1.8422 4.7319 32 1 3.1296 -0.7515 -1.2319 33 1 1.6487 -1.7384 -1.2668 34 1 1.5453 1.8409 -1.4420 35 1 3.0208 1.5334 -2.3885 36 1 1.5981 3.2188 -3.5104 37 1 0.2418 2.0659 -3.5350 38 1 2.9451 1.6935 -4.9057 39 1 1.3995 2.0568 -5.7130 40 1 3.1850 -0.3474 -6.2134 41 1 1.9601 -1.6369 -6.1442 42 1 0.3545 -0.1761 -7.3431 43 1 1.5795 1.1135 -7.4123 44 1 0.8335 0.4571 -9.9179 45 1 1.9082 -0.6030 -10.6552 46 1 3.2183 -0.4947 -3.6790 47 1 1.8876 -1.6766 -3.6804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:31 Heat of formation + Delta-G solvation = -76.029445 kcal Electronic energy + Delta-G solvation = -22496.712754 eV Core-core repulsion = 19291.581755 eV Total energy + Delta-G solvation = -3205.130999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.95702 -39.08889 -36.12212 -34.05559 -33.85063 -32.42362 -31.48516 -29.69904 -26.87261 -26.04499 -24.92197 -23.50769 -22.34193 -21.45143 -20.41121 -19.67147 -18.57136 -17.65206 -16.98079 -16.37662 -15.89001 -15.53275 -14.86706 -14.59480 -14.35452 -14.26206 -14.07575 -13.90725 -13.30255 -13.04741 -12.75940 -12.51745 -12.16342 -12.08435 -11.73264 -11.46006 -11.31038 -11.23931 -10.94729 -10.85014 -10.77004 -10.58181 -10.48384 -10.28233 -10.25619 -10.13120 -10.04529 -10.03289 -9.50663 -9.10459 -8.88092 -8.30461 -7.91425 -5.95100 -3.96084 2.33699 3.18991 3.33463 3.40982 3.44890 4.17229 4.48703 4.50368 4.63557 4.72839 4.91730 4.95836 5.05176 5.25215 5.40217 5.40690 5.52692 5.54676 5.61660 5.69678 5.74028 5.78780 5.87249 5.94507 5.98120 6.03862 6.15131 6.19106 6.24595 6.30592 6.40013 6.44152 6.49302 6.60077 6.71762 6.95106 7.06380 7.19309 7.24753 7.49932 7.52222 7.73012 7.89087 7.93148 8.05455 8.49463 9.10566 9.67148 11.16484 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044115 B = 0.002650 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.545271 B =10564.022420 C =10907.913012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.061 3.939 14 N -0.534 5.534 15 C 0.048 3.952 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.083 4.083 19 H 0.079 0.921 20 C -0.099 4.099 21 C -0.141 4.141 22 C 0.514 3.486 23 N -0.861 5.861 24 O -0.543 6.543 25 C 0.060 3.940 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.401 0.599 45 H 0.399 0.601 46 H 0.029 0.971 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 6.372 -25.418 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.066 4.066 14 N -0.258 5.258 15 C -0.080 4.080 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.102 4.102 19 H 0.097 0.903 20 C -0.138 4.138 21 C -0.181 4.181 22 C 0.299 3.701 23 N -0.425 5.425 24 O -0.419 6.419 25 C -0.068 4.068 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.229 0.771 45 H 0.229 0.771 46 H 0.047 0.953 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.314 5.697 -25.039 26.039 hybrid contribution 0.511 0.646 0.544 0.987 sum -3.803 6.343 -24.495 25.587 Atomic orbital electron populations 1.21587 0.95691 1.00687 1.00010 1.21311 0.96029 0.99050 0.94046 0.92461 1.19126 0.95909 0.95604 0.90453 1.21263 1.34399 1.08235 0.90967 0.92563 1.25028 0.95399 0.95113 0.99105 1.69973 1.39195 1.21261 1.23223 0.86581 0.78217 0.80133 0.83345 1.19771 1.21097 1.21155 1.22289 0.97030 0.97962 0.89309 1.61971 1.59637 1.02195 1.01999 1.22189 0.97625 0.88951 0.99207 1.21584 1.01217 0.98413 0.94150 1.21693 1.00701 0.95325 0.97655 1.21203 1.00979 0.94732 0.93276 0.90259 1.21363 1.00194 1.00631 0.91582 1.21738 1.01907 1.01938 0.92548 1.20910 0.81952 0.81584 0.85613 1.43957 1.43200 1.46838 1.08480 1.90763 1.30831 1.33064 1.87253 1.22059 0.96442 0.98605 0.89681 0.92852 0.93971 0.94069 0.96548 0.96973 0.93176 0.95587 0.91210 0.89516 0.95488 0.91987 0.91243 0.92387 0.92201 0.91293 0.91044 0.88698 0.88630 0.77097 0.77080 0.95276 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.79 37.16 0.33 -2.06 16 2 C -0.09 -1.76 1.85 -90.62 -0.17 -1.93 16 3 H 0.06 1.19 6.07 -51.93 -0.32 0.87 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.38 8.41 -34.45 -0.29 -14.67 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.09 4.55 -3.82 -0.02 1.08 16 14 N -0.53 -8.01 4.08 -234.66 -0.96 -8.97 16 15 C 0.05 0.68 4.97 -3.83 -0.02 0.66 16 16 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 17 C -0.12 -1.09 4.98 -26.61 -0.13 -1.22 16 18 C -0.08 -0.84 2.35 -90.53 -0.21 -1.05 16 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.10 -0.93 3.97 -26.73 -0.11 -1.04 16 21 C -0.14 -0.95 5.46 -27.89 -0.15 -1.10 16 22 C 0.51 4.43 8.10 -10.98 -0.09 4.34 16 23 N -0.86 -4.01 8.87 31.22 0.28 -3.73 16 24 O -0.54 -7.34 16.82 5.56 0.09 -7.24 16 25 C 0.06 0.78 4.74 -3.83 -0.02 0.76 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.74 16 27 H 0.04 0.73 7.55 -51.93 -0.39 0.34 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.34 5.70 -51.93 -0.30 1.04 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.44 6.70 -51.93 -0.35 0.09 16 40 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.49 6.63 -51.93 -0.34 0.14 16 44 H 0.40 0.61 8.83 -40.82 -0.36 0.25 16 45 H 0.40 1.64 8.93 -40.82 -0.36 1.27 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -33.27 362.82 -9.29 -42.56 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.62 Total: -2.78 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -1.26 Total: -15.62 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.06 Total: -39.20 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.27 -9.29 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.472 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds