Wall clock time and date at job start Tue Mar 31 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34785 * 120.00147 * 2 1 4 4 O 1.21284 * 119.99440 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47268 * 179.97438 * 5 3 2 7 7 C 1.53120 * 109.52080 * 174.99786 * 6 5 3 8 8 C 1.53045 * 109.27382 * 177.56287 * 7 6 5 9 9 N 1.46844 * 109.52143 * 300.82250 * 8 7 6 10 10 C 1.46906 * 110.99887 * 185.83959 * 9 8 7 11 11 C 1.53000 * 109.47072 * 170.00138 * 10 9 8 12 12 H 1.08998 * 109.47666 * 54.99810 * 11 10 9 13 13 C 1.53005 * 109.46913 * 294.99925 * 11 10 9 14 14 C 1.52998 * 109.46937 * 175.00313 * 11 10 9 15 15 C 1.50707 * 109.47006 * 184.99877 * 14 11 10 16 16 H 1.07996 * 119.99871 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99966 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99820 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47440 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46880 * 120.00542 * 19 17 15 22 22 H 1.48503 * 109.47137 * 240.00094 * 19 17 15 23 23 C 1.46853 * 111.20068 * 61.74346 * 9 8 7 24 24 C 1.53033 * 109.52262 * 298.25891 * 23 9 8 25 25 H 1.08992 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46785 * 300.00418 * 1 2 3 27 27 H 1.08997 * 109.47156 * 59.99973 * 1 2 3 28 28 H 0.96998 * 120.00042 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46996 * 60.00109 * 5 3 2 30 30 H 1.08997 * 109.47220 * 300.00071 * 5 3 2 31 31 H 1.08999 * 109.51592 * 54.87356 * 6 5 3 32 32 H 1.08996 * 109.49890 * 57.62760 * 7 6 5 33 33 H 1.08989 * 109.54077 * 297.52122 * 7 6 5 34 34 H 1.09000 * 109.46052 * 180.80838 * 8 7 6 35 35 H 1.08998 * 109.45499 * 60.82968 * 8 7 6 36 36 H 1.08993 * 109.47164 * 289.99991 * 10 9 8 37 37 H 1.08996 * 109.46920 * 50.00025 * 10 9 8 38 38 H 1.09000 * 109.46871 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47528 * 300.00033 * 13 11 10 40 40 H 1.08995 * 109.47281 * 60.00455 * 13 11 10 41 41 H 1.09002 * 109.46907 * 304.99730 * 14 11 10 42 42 H 1.09002 * 109.47546 * 64.99887 * 14 11 10 43 43 H 0.96993 * 119.99901 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.46125 * 58.27453 * 23 9 8 45 45 H 1.09003 * 109.46462 * 178.23846 * 23 9 8 46 46 H 1.09007 * 109.50330 * 299.23709 * 24 23 9 47 47 H 1.08999 * 109.53502 * 179.13924 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1673 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1559 2.6098 -0.0002 7 6 5.6819 2.6130 0.1262 8 6 6.1910 4.0549 0.0637 9 7 5.7860 4.6635 -1.2098 10 6 6.3742 6.0007 -1.3649 11 6 6.1405 6.4982 -2.7927 12 1 5.0751 6.4631 -3.0200 13 6 6.9012 5.6050 -3.7749 14 6 6.6419 7.9381 -2.9195 15 6 6.3014 8.4700 -4.2879 16 1 5.7793 7.8437 -4.9960 17 6 6.6556 9.7564 -4.6353 18 7 7.2910 10.5192 -3.7726 19 14 6.2342 10.4153 -6.3316 20 1 5.5244 9.3670 -7.1076 21 1 5.3596 11.6078 -6.1962 22 1 7.4832 10.7954 -7.0394 23 6 4.3235 4.7144 -1.3328 24 6 3.7588 3.2923 -1.3120 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9500 -0.8400 0.0004 29 1 4.0095 0.6532 -0.8892 30 1 4.0089 0.6536 0.8908 31 1 3.7197 3.1507 0.8396 32 1 6.1159 2.0381 -0.6917 33 1 5.9698 2.1664 1.0779 34 1 7.2783 4.0597 0.1390 35 1 5.7671 4.6257 0.8899 36 1 5.9062 6.6875 -0.6597 37 1 7.4451 5.9516 -1.1679 38 1 6.7344 5.9592 -4.7922 39 1 7.9667 5.6401 -3.5477 40 1 6.5441 4.5792 -3.6846 41 1 6.1645 8.5572 -2.1599 42 1 7.7227 7.9603 -2.7797 43 1 7.5398 11.4243 -4.0169 44 1 3.9086 5.2822 -0.5001 45 1 4.0546 5.1983 -2.2718 46 1 4.1627 2.7279 -2.1526 47 1 2.6721 3.3305 -1.3879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:59 Heat of formation + Delta-G solvation = -64.195418 kcal Electronic energy + Delta-G solvation = -22697.900967 eV Core-core repulsion = 19493.283129 eV Total energy + Delta-G solvation = -3204.617837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.20803 -38.71563 -35.81091 -34.83077 -33.52188 -31.88028 -30.62230 -29.42427 -27.01006 -26.50146 -24.97773 -23.09877 -22.97027 -21.64419 -20.56812 -19.57750 -18.68752 -17.38919 -16.41126 -16.17323 -15.81060 -15.40162 -14.77634 -14.46256 -14.39759 -14.21723 -14.00090 -13.59325 -13.11175 -12.99241 -12.80738 -12.61604 -12.37239 -12.09277 -11.94870 -11.85068 -11.36521 -11.18508 -11.02249 -10.82006 -10.74134 -10.59271 -10.54030 -10.34118 -10.21078 -10.05191 -9.80663 -9.46020 -9.41327 -9.04356 -8.85857 -8.27249 -7.85948 -5.92155 -3.92695 2.43069 2.94032 3.35938 3.43287 3.47861 4.28022 4.46645 4.53694 4.64691 4.75769 4.85391 5.04090 5.15301 5.28205 5.32562 5.39385 5.43736 5.46164 5.54193 5.59542 5.73747 5.77542 5.87980 5.95291 5.98793 6.03985 6.12733 6.16870 6.24866 6.34294 6.39113 6.50317 6.52181 6.66911 6.80663 7.11490 7.15726 7.24663 7.30181 7.55724 7.58233 7.77166 7.93555 7.99200 8.08972 8.53560 9.14058 9.70370 11.19534 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.002994 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.313128 B = 9349.424940 C = 9982.591314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.509 3.491 4 O -0.530 6.530 5 C -0.135 4.135 6 C -0.073 4.073 7 C -0.109 4.109 8 C 0.056 3.944 9 N -0.534 5.534 10 C 0.061 3.939 11 C -0.081 4.081 12 H 0.056 0.944 13 C -0.121 4.121 14 C 0.026 3.974 15 C -0.509 4.509 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.055 3.945 24 C -0.113 4.113 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.401 0.599 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.258 0.742 44 H 0.028 0.972 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -24.346 10.092 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.395 5.395 3 C 0.296 3.704 4 O -0.406 6.406 5 C -0.175 4.175 6 C -0.092 4.092 7 C -0.147 4.147 8 C -0.073 4.073 9 N -0.259 5.259 10 C -0.066 4.066 11 C -0.100 4.100 12 H 0.074 0.926 13 C -0.178 4.178 14 C -0.011 4.011 15 C -0.547 4.547 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.073 4.073 24 C -0.150 4.150 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.234 0.766 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.228 -23.694 9.736 26.905 hybrid contribution -0.289 0.569 -0.189 0.666 sum -8.518 -23.125 9.547 26.428 Atomic orbital electron populations 1.21514 0.79863 1.02003 1.02381 1.45895 1.07741 1.08898 1.76943 1.20906 0.90640 0.83428 0.75390 1.90709 1.70530 1.31087 1.48236 1.21763 0.91212 1.00305 1.04226 1.20976 0.95262 0.93173 0.99747 1.21633 0.94568 0.97013 1.01496 1.22021 1.00059 0.94479 0.90720 1.61991 1.09035 1.22693 1.32182 1.22289 0.98781 0.86961 0.98588 1.21222 0.99551 0.97687 0.91521 0.92579 1.21565 0.98927 0.97877 0.99466 1.19137 0.96313 0.88913 0.96767 1.21284 1.36340 0.97783 0.99330 0.92542 1.25027 0.95461 0.97158 0.97001 1.69980 1.40611 1.08441 1.34743 0.86583 0.78033 0.78900 0.84780 1.19749 1.21156 1.21123 1.22092 0.87401 0.96378 1.01423 1.21736 1.01328 0.95722 0.96256 0.90863 0.92343 0.92206 0.76612 0.88730 0.89074 0.90863 0.91055 0.92027 0.91003 0.95469 0.95530 0.91465 0.92919 0.94308 0.93946 0.96996 0.96628 0.93222 0.95414 0.90030 0.91854 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.74 -4.95 5.71 -67.08 -0.38 -5.33 16 3 C 0.51 5.04 7.56 -10.99 -0.08 4.96 16 4 O -0.53 -7.58 13.99 5.55 0.08 -7.50 16 5 C -0.14 -1.06 5.18 -27.88 -0.14 -1.20 16 6 C -0.07 -0.79 1.90 -90.50 -0.17 -0.96 16 7 C -0.11 -1.12 5.38 -26.65 -0.14 -1.27 16 8 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 9 N -0.53 -8.40 4.11 -234.66 -0.96 -9.37 16 10 C 0.06 1.12 4.35 -3.82 -0.02 1.10 16 11 C -0.08 -1.73 2.26 -90.62 -0.20 -1.94 16 12 H 0.06 1.23 6.22 -51.93 -0.32 0.91 16 13 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.62 8.41 -34.44 -0.29 -14.91 16 16 H 0.06 1.59 7.06 -52.49 -0.37 1.22 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.05 0.86 5.30 -3.83 -0.02 0.84 16 24 C -0.11 -1.49 5.09 -26.66 -0.14 -1.62 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.40 1.37 8.83 -40.82 -0.36 1.01 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.92 7.95 -51.93 -0.41 0.50 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.51 8.14 -51.94 -0.42 0.09 16 34 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 38 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 1.39 6.12 -51.93 -0.32 1.07 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 1.15 6.04 -51.93 -0.31 0.84 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -33.48 363.55 -9.30 -42.78 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -8.75 Total: -3.21 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.48 Total: -13.17 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.61 Total: -41.53 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.50 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.48 -9.30 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.417 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds