Wall clock time and date at job start Tue Mar 31 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00319 * 2 1 4 4 O 1.21284 * 119.99958 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00140 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47422 * 180.02562 * 5 3 2 7 7 C 1.53126 * 109.52684 * 175.00015 * 6 5 3 8 8 C 1.53030 * 109.27852 * 177.56020 * 7 6 5 9 9 N 1.46846 * 109.52355 * 300.81835 * 8 7 6 10 10 C 1.46902 * 111.00195 * 185.84303 * 9 8 7 11 11 C 1.52992 * 109.47069 * 75.76813 * 10 9 8 12 12 H 1.08996 * 109.47828 * 305.06575 * 11 10 9 13 13 C 1.52999 * 109.47156 * 65.07156 * 11 10 9 14 14 C 1.53005 * 109.47036 * 185.06691 * 11 10 9 15 15 C 1.50701 * 109.47157 * 175.00198 * 14 11 10 16 16 H 1.08001 * 119.99815 * 0.02562 * 15 14 11 17 17 C 1.37883 * 120.00170 * 180.02562 * 15 14 11 18 18 N 1.31511 * 119.99865 * 179.72525 * 17 15 14 19 19 Si 1.86797 * 119.99834 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46946 * 269.72579 * 19 17 15 21 21 H 1.48504 * 109.47192 * 29.72193 * 19 17 15 22 22 H 1.48495 * 109.47200 * 149.72493 * 19 17 15 23 23 C 1.46843 * 111.19796 * 61.74755 * 9 8 7 24 24 C 1.53039 * 109.52190 * 298.25883 * 23 9 8 25 25 H 1.09006 * 109.46748 * 59.99133 * 1 2 3 26 26 H 1.08995 * 109.47675 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46854 * 300.00356 * 1 2 3 28 28 H 0.96998 * 119.99375 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47235 * 59.99932 * 5 3 2 30 30 H 1.09001 * 109.47427 * 300.00374 * 5 3 2 31 31 H 1.09004 * 109.52185 * 54.87606 * 6 5 3 32 32 H 1.09000 * 109.50149 * 57.61825 * 7 6 5 33 33 H 1.09001 * 109.53501 * 297.52208 * 7 6 5 34 34 H 1.09004 * 109.45863 * 180.80857 * 8 7 6 35 35 H 1.08994 * 109.45759 * 60.83168 * 8 7 6 36 36 H 1.09002 * 109.46578 * 315.77355 * 10 9 8 37 37 H 1.08995 * 109.47685 * 195.77274 * 10 9 8 38 38 H 1.09000 * 109.47494 * 185.01063 * 13 11 10 39 39 H 1.09000 * 109.46960 * 305.00928 * 13 11 10 40 40 H 1.09004 * 109.47187 * 65.00612 * 13 11 10 41 41 H 1.09004 * 109.47239 * 55.00426 * 14 11 10 42 42 H 1.08998 * 109.47053 * 295.00051 * 14 11 10 43 43 H 0.97001 * 119.99860 * 180.27542 * 18 17 15 44 44 H 1.09004 * 109.46398 * 58.26918 * 23 9 8 45 45 H 1.08994 * 109.46701 * 178.24040 * 23 9 8 46 46 H 1.09005 * 109.49993 * 299.23489 * 24 23 9 47 47 H 1.08998 * 109.50605 * 179.12393 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1560 2.6095 0.0011 7 6 5.6820 2.6127 0.1275 8 6 6.1911 4.0545 0.0662 9 7 5.7862 4.6642 -1.2069 10 6 6.3745 6.0015 -1.3608 11 6 7.8547 5.8687 -1.7241 12 1 8.3585 5.2546 -0.9777 13 6 7.9854 5.2100 -3.0989 14 6 8.4974 7.2567 -1.7606 15 6 9.9793 7.1181 -1.9971 16 1 10.4187 6.1380 -2.1105 17 6 10.7742 8.2425 -2.0687 18 7 12.0682 8.1212 -2.2697 19 14 10.0143 9.9375 -1.8719 20 1 9.6039 10.4535 -3.2025 21 1 8.8247 9.8470 -0.9876 22 1 11.0102 10.8594 -1.2691 23 6 4.3238 4.7154 -1.3298 24 6 3.7589 3.2932 -1.3101 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9499 -0.8401 -0.0004 29 1 4.0095 0.6530 -0.8891 30 1 4.0089 0.6534 0.8908 31 1 3.7198 3.1498 0.8414 32 1 6.1161 2.0384 -0.6910 33 1 5.9699 2.1652 1.0788 34 1 7.2785 4.0592 0.1415 35 1 5.7673 4.6246 0.8929 36 1 6.2781 6.5507 -0.4243 37 1 5.8529 6.5390 -2.1526 38 1 9.0383 5.0343 -3.3190 39 1 7.4508 4.2601 -3.0989 40 1 7.5600 5.8662 -3.8581 41 1 8.3269 7.7612 -0.8095 42 1 8.0540 7.8413 -2.5666 43 1 12.6280 8.9120 -2.3161 44 1 3.9089 5.2825 -0.4965 45 1 4.0549 5.2000 -2.2683 46 1 4.1627 2.7296 -2.1512 47 1 2.6723 3.3321 -1.3857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:01 Heat of formation + Delta-G solvation = -61.607053 kcal Electronic energy + Delta-G solvation = -22651.857389 eV Core-core repulsion = 19447.351791 eV Total energy + Delta-G solvation = -3204.505597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25862 -38.76915 -35.90311 -34.88073 -33.58740 -31.94008 -30.69882 -29.53227 -27.46843 -26.67747 -25.01333 -23.22954 -22.69365 -21.51000 -20.60894 -19.60916 -18.82111 -17.42821 -16.72531 -16.27497 -15.86791 -15.53679 -14.88459 -14.51899 -14.27933 -14.14616 -14.05038 -13.62704 -13.32178 -13.06825 -12.81325 -12.70780 -12.50589 -12.27177 -12.04765 -11.91920 -11.52705 -11.29423 -11.08611 -10.92340 -10.79818 -10.70743 -10.49902 -10.38216 -10.26550 -9.89679 -9.68340 -9.60185 -9.47611 -9.26161 -8.98725 -8.46449 -7.93450 -5.96979 -3.93199 2.37775 2.89615 3.35363 3.42527 3.46847 4.20531 4.42726 4.51652 4.61107 4.70571 4.81791 5.02563 5.09709 5.22186 5.30637 5.35427 5.36955 5.39865 5.47405 5.54095 5.66493 5.71292 5.78486 5.90001 5.95086 6.00700 6.07383 6.11310 6.16916 6.18551 6.28723 6.39769 6.44485 6.53884 6.71672 6.93916 7.11006 7.13832 7.21699 7.37359 7.42425 7.49930 7.60186 7.89254 7.93648 8.63692 9.09400 9.66395 11.16527 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046909 B = 0.002779 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.762294 B =10073.085572 C =10284.840402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.510 3.490 4 O -0.533 6.533 5 C -0.136 4.136 6 C -0.072 4.072 7 C -0.110 4.110 8 C 0.055 3.945 9 N -0.533 5.533 10 C 0.058 3.942 11 C -0.069 4.069 12 H 0.060 0.940 13 C -0.123 4.123 14 C -0.011 4.011 15 C -0.509 4.509 16 H 0.073 0.927 17 C 0.063 3.937 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.267 1.267 22 H -0.289 1.289 23 C 0.057 3.943 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.401 0.599 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.011 0.989 42 H 0.010 0.990 43 H 0.261 0.739 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.480 -18.245 5.285 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.394 5.394 3 C 0.298 3.702 4 O -0.409 6.409 5 C -0.176 4.176 6 C -0.091 4.091 7 C -0.148 4.148 8 C -0.073 4.073 9 N -0.258 5.258 10 C -0.070 4.070 11 C -0.088 4.088 12 H 0.079 0.921 13 C -0.180 4.180 14 C -0.049 4.049 15 C -0.547 4.547 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.191 1.191 22 H -0.216 1.216 23 C -0.071 4.071 24 C -0.150 4.150 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.235 0.765 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.030 0.970 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.607 -17.658 4.889 28.330 hybrid contribution -0.382 1.058 0.753 1.353 sum -21.989 -16.600 5.642 28.124 Atomic orbital electron populations 1.21516 0.79877 1.02046 1.02318 1.45898 1.07744 1.08947 1.76830 1.20912 0.90655 0.83400 0.75274 1.90692 1.70587 1.31121 1.48484 1.21769 0.91108 1.00317 1.04387 1.20970 0.95481 0.93170 0.99481 1.21649 0.94241 0.97149 1.01789 1.22076 1.01072 0.94199 0.89939 1.61943 1.08129 1.22422 1.33295 1.22328 0.97290 0.87868 0.99489 1.20972 0.91538 0.98647 0.97600 0.92127 1.21573 1.01274 0.99060 0.96102 1.19644 0.96769 0.92466 0.95977 1.21140 0.90434 0.94806 1.48336 0.90850 1.25036 0.94728 0.99052 0.94885 1.69917 1.04318 1.29515 1.50839 0.86807 0.79282 0.84643 0.78703 1.20409 1.19132 1.21553 1.22047 0.87897 0.96676 1.00444 1.21730 1.01165 0.95554 0.96596 0.92271 0.90820 0.92338 0.76533 0.88666 0.88941 0.90886 0.90921 0.91840 0.90042 0.95433 0.95326 0.91588 0.92626 0.93507 0.94389 0.97045 0.97157 0.92908 0.95480 0.91127 0.91772 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.85 0.64 1.13 16 2 N -0.74 -4.59 5.71 -67.08 -0.38 -4.97 16 3 C 0.51 4.75 7.56 -10.99 -0.08 4.67 16 4 O -0.53 -7.16 13.99 5.55 0.08 -7.08 16 5 C -0.14 -1.02 5.18 -27.89 -0.14 -1.17 16 6 C -0.07 -0.75 1.90 -90.50 -0.17 -0.92 16 7 C -0.11 -1.18 5.38 -26.65 -0.14 -1.32 16 8 C 0.06 0.75 5.29 -3.84 -0.02 0.73 16 9 N -0.53 -8.01 3.96 -234.68 -0.93 -8.94 16 10 C 0.06 1.00 4.39 -3.83 -0.02 0.98 16 11 C -0.07 -1.39 2.39 -90.62 -0.22 -1.61 16 12 H 0.06 1.27 6.70 -51.93 -0.35 0.92 16 13 C -0.12 -2.42 8.86 37.16 0.33 -2.09 16 14 C -0.01 -0.26 3.52 -27.88 -0.10 -0.36 16 15 C -0.51 -14.63 9.03 -34.44 -0.31 -14.94 16 16 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 19 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C 0.06 0.78 5.43 -3.83 -0.02 0.76 16 24 C -0.11 -1.34 5.09 -26.65 -0.14 -1.48 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.40 1.24 8.83 -40.82 -0.36 0.88 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.88 7.95 -51.93 -0.41 0.46 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.20 6.65 -51.93 -0.35 0.86 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 37 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 38 H 0.05 1.20 7.10 -51.93 -0.37 0.83 16 39 H 0.05 0.83 7.62 -51.93 -0.40 0.44 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.01 0.28 7.19 -51.93 -0.37 -0.09 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.02 6.04 -51.93 -0.31 0.71 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -33.56 360.58 -8.93 -42.49 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.74 Total: -3.11 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.49 Total: -13.83 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.54 Total: -41.48 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.08 Total: -7.08 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.56 -8.93 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.119 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds